Re: [O] org-babel export table from R to LaTeX
Thanks for your suggestion, I solved the problem using: #+headers: :results output latex #+begin_src R :session *R* :exports results ... print(xtable(summary(mypca))) #+end_src Regards Riccardo 2012/2/14 Andreas Leha andreas.l...@med.uni-goettingen.de Christophe Pouzat christophe.pou...@gmail.com writes: Sorry, Checking foo.org ( http://orgmode.org/w/?p=worg.git;a=blob_plain;f=org-contrib/babel/examples/foo.org;hb=HEAD ) I got the correct way to do it: #+begin_src R :results output latex :exports results library(xtable) xtable(foo, caption = ANOVA Table, label = tab:one, digits = c(0, 0, 2, 0, 2, 3, 3)) #+end_src Does it solve your problem? Christophe Riccardo Romoli ric.rom...@gmail.com writes: If I set :export latex when I exports to LaTeX I have only the R code, not the table. Best 2012/2/14 Christophe Pouzat christophe.pou...@gmail.com Riccardo Romoli ric.rom...@gmail.com writes: Hi, I work with org-babel and R. In the R session I create a table that I have to export to LaTeX. This is the code I use: #+headers: :results latex #+begin_src R :session *R* :exports results . print(xtable(summary(mypca))) #+end_src I do not understand why the exported table is delimited by |: |% latex table generated in R 2.14.1 by xtable 1.6-0 package | | % Tue Feb 14 16:21:48 2012 | | \begin{table}[ht] | | \begin{center} | | \begin{tabular}{r} | | \hline | | PC1 PC2 PC3 PC4 PC5 PC6 PC7 PC8 PC9 PC10 PC11 PC12 PC13 PC14 PC15 PC16 \\ | | \hline | | Standard deviation 3.4693 2.8113 2.5561 2.2668 2.0015 1.9236 1.7287 1.6220 1.4288 1.3456 1.2596 1.2195 1.1278 1.0778 0.8390 0. \\ | | Proportion of Variance 0.2188 0.1437 0.1188 0.0934 0.0728 0.0673 0.0543 0.0478 0.0371 0.0329 0.0289 0.0270 0.0231 0.0211 0.0128 0. \\ | | Cumulative Proportion 0.2188 0.3625 0.4813 0.5747 0.6476 0.7149 0.7692 0.8170 0.8541 0.8871 0.9159 0.9429 0.9661 0.9872 1. 1. \\ | | \hline | | \end{tabular} | | \end{center} | | \end{table} | | | Should I change some headers settings?? Best Hi Riccardo, Try :exports latex instead of :exports results Christophe -- Most people are not natural-born statisticians. Left to our own devices we are not very good at picking out patterns from a sea of noisy data. To put it another way, we are all too good at picking out non-existent patterns that happen to suit our purposes. Bradley Efron Robert Tibshirani (1993) An Introduction to the Bootstrap -- Christophe Pouzat MAP5 - Mathématiques Appliquées à Paris 5 CNRS UMR 8145 45, rue des Saints-Pères 75006 PARIS France tel: +33142863828 mobile: +33662941034 web: http://www.biomedicale.univ-paris5.fr/physcerv/C_Pouzat.html Hi Riccardo, additionally, if you do not want to get too tightly bound to LaTeX, check out the ascii-package, e.g. #+begin_src R :results output org wrap :exports results library(ascii) ## from the lm help page: ctl - c(4.17,5.58,5.18,6.11,4.50,4.61,5.17,4.53,5.33,5.14) trt - c(4.81,4.17,4.41,3.59,5.87,3.83,6.03,4.89,4.32,4.69) group - gl(2,10,20, labels=c(Ctl,Trt)) weight - c(ctl, trt) lm.D9 - lm(weight ~ group) lm.D90 - lm(weight ~ group - 1) # omitting intercept print(ascii(anova(lm.D9)), type=org) #+end_src Cheers, Andreas
Re: [O] org-babel export table from R to LaTeX
If I set :export latex when I exports to LaTeX I have only the R code, not the table. Best 2012/2/14 Christophe Pouzat christophe.pou...@gmail.com Riccardo Romoli ric.rom...@gmail.com writes: Hi, I work with org-babel and R. In the R session I create a table that I have to export to LaTeX. This is the code I use: #+headers: :results latex #+begin_src R :session *R* :exports results . print(xtable(summary(mypca))) #+end_src I do not understand why the exported table is delimited by |: |% latex table generated in R 2.14.1 by xtable 1.6-0 package | | % Tue Feb 14 16:21:48 2012 | | \begin{table}[ht] | | \begin{center} | | \begin{tabular}{r} | | \hline | | PC1 PC2 PC3 PC4 PC5 PC6 PC7 PC8 PC9 PC10 PC11 PC12 PC13 PC14 PC15 PC16 \\ | | \hline | | Standard deviation 3.4693 2.8113 2.5561 2.2668 2.0015 1.9236 1.7287 1.6220 1.4288 1.3456 1.2596 1.2195 1.1278 1.0778 0.8390 0. \\ | | Proportion of Variance 0.2188 0.1437 0.1188 0.0934 0.0728 0.0673 0.0543 0.0478 0.0371 0.0329 0.0289 0.0270 0.0231 0.0211 0.0128 0. \\ | | Cumulative Proportion 0.2188 0.3625 0.4813 0.5747 0.6476 0.7149 0.7692 0.8170 0.8541 0.8871 0.9159 0.9429 0.9661 0.9872 1. 1. \\ | | \hline | | \end{tabular} | | \end{center} | | \end{table} | | | Should I change some headers settings?? Best Hi Riccardo, Try :exports latex instead of :exports results Christophe -- Most people are not natural-born statisticians. Left to our own devices we are not very good at picking out patterns from a sea of noisy data. To put it another way, we are all too good at picking out non-existent patterns that happen to suit our purposes. Bradley Efron Robert Tibshirani (1993) An Introduction to the Bootstrap -- Christophe Pouzat MAP5 - Mathématiques Appliquées à Paris 5 CNRS UMR 8145 45, rue des Saints-Pères 75006 PARIS France tel: +33142863828 mobile: +33662941034 web: http://www.biomedicale.univ-paris5.fr/physcerv/C_Pouzat.html
Re: [O] org-babel export table from R to LaTeX
Sorry, Checking foo.org (http://orgmode.org/w/?p=worg.git;a=blob_plain;f=org-contrib/babel/examples/foo.org;hb=HEAD) I got the correct way to do it: #+begin_src R :results output latex :exports results library(xtable) xtable(foo, caption = ANOVA Table, label = tab:one, digits = c(0, 0, 2, 0, 2, 3, 3)) #+end_src Does it solve your problem? Christophe Riccardo Romoli ric.rom...@gmail.com writes: If I set :export latex when I exports to LaTeX I have only the R code, not the table. Best 2012/2/14 Christophe Pouzat christophe.pou...@gmail.com Riccardo Romoli ric.rom...@gmail.com writes: Hi, I work with org-babel and R. In the R session I create a table that I have to export to LaTeX. This is the code I use: #+headers: :results latex #+begin_src R :session *R* :exports results . print(xtable(summary(mypca))) #+end_src I do not understand why the exported table is delimited by |: |% latex table generated in R 2.14.1 by xtable 1.6-0 package | | % Tue Feb 14 16:21:48 2012 | | \begin{table}[ht] | | \begin{center} | | \begin{tabular}{r} | | \hline | | PC1 PC2 PC3 PC4 PC5 PC6 PC7 PC8 PC9 PC10 PC11 PC12 PC13 PC14 PC15 PC16 \\ | | \hline | | Standard deviation 3.4693 2.8113 2.5561 2.2668 2.0015 1.9236 1.7287 1.6220 1.4288 1.3456 1.2596 1.2195 1.1278 1.0778 0.8390 0. \\ | | Proportion of Variance 0.2188 0.1437 0.1188 0.0934 0.0728 0.0673 0.0543 0.0478 0.0371 0.0329 0.0289 0.0270 0.0231 0.0211 0.0128 0. \\ | | Cumulative Proportion 0.2188 0.3625 0.4813 0.5747 0.6476 0.7149 0.7692 0.8170 0.8541 0.8871 0.9159 0.9429 0.9661 0.9872 1. 1. \\ | | \hline | | \end{tabular} | | \end{center} | | \end{table} | | | Should I change some headers settings?? Best Hi Riccardo, Try :exports latex instead of :exports results Christophe -- Most people are not natural-born statisticians. Left to our own devices we are not very good at picking out patterns from a sea of noisy data. To put it another way, we are all too good at picking out non-existent patterns that happen to suit our purposes. Bradley Efron Robert Tibshirani (1993) An Introduction to the Bootstrap -- Christophe Pouzat MAP5 - Mathématiques Appliquées à Paris 5 CNRS UMR 8145 45, rue des Saints-Pères 75006 PARIS France tel: +33142863828 mobile: +33662941034 web: http://www.biomedicale.univ-paris5.fr/physcerv/C_Pouzat.html -- Most people are not natural-born statisticians. Left to our own devices we are not very good at picking out patterns from a sea of noisy data. To put it another way, we are all too good at picking out non-existent patterns that happen to suit our purposes. Bradley Efron Robert Tibshirani (1993) An Introduction to the Bootstrap -- Christophe Pouzat MAP5 - Mathématiques Appliquées à Paris 5 CNRS UMR 8145 45, rue des Saints-Pères 75006 PARIS France tel: +33142863828 mobile: +33662941034 web: http://www.biomedicale.univ-paris5.fr/physcerv/C_Pouzat.html
Re: [O] org-babel export table from R to LaTeX
Christophe Pouzat christophe.pou...@gmail.com writes: Sorry, Checking foo.org (http://orgmode.org/w/?p=worg.git;a=blob_plain;f=org-contrib/babel/examples/foo.org;hb=HEAD) I got the correct way to do it: #+begin_src R :results output latex :exports results library(xtable) xtable(foo, caption = ANOVA Table, label = tab:one, digits = c(0, 0, 2, 0, 2, 3, 3)) #+end_src Does it solve your problem? Christophe Riccardo Romoli ric.rom...@gmail.com writes: If I set :export latex when I exports to LaTeX I have only the R code, not the table. Best 2012/2/14 Christophe Pouzat christophe.pou...@gmail.com Riccardo Romoli ric.rom...@gmail.com writes: Hi, I work with org-babel and R. In the R session I create a table that I have to export to LaTeX. This is the code I use: #+headers: :results latex #+begin_src R :session *R* :exports results . print(xtable(summary(mypca))) #+end_src I do not understand why the exported table is delimited by |: |% latex table generated in R 2.14.1 by xtable 1.6-0 package | | % Tue Feb 14 16:21:48 2012 | | \begin{table}[ht] | | \begin{center} | | \begin{tabular}{r} | | \hline | | PC1 PC2 PC3 PC4 PC5 PC6 PC7 PC8 PC9 PC10 PC11 PC12 PC13 PC14 PC15 PC16 \\ | | \hline | | Standard deviation 3.4693 2.8113 2.5561 2.2668 2.0015 1.9236 1.7287 1.6220 1.4288 1.3456 1.2596 1.2195 1.1278 1.0778 0.8390 0. \\ | | Proportion of Variance 0.2188 0.1437 0.1188 0.0934 0.0728 0.0673 0.0543 0.0478 0.0371 0.0329 0.0289 0.0270 0.0231 0.0211 0.0128 0. \\ | | Cumulative Proportion 0.2188 0.3625 0.4813 0.5747 0.6476 0.7149 0.7692 0.8170 0.8541 0.8871 0.9159 0.9429 0.9661 0.9872 1. 1. \\ | | \hline | | \end{tabular} | | \end{center} | | \end{table} | | | Should I change some headers settings?? Best Hi Riccardo, Try :exports latex instead of :exports results Christophe -- Most people are not natural-born statisticians. Left to our own devices we are not very good at picking out patterns from a sea of noisy data. To put it another way, we are all too good at picking out non-existent patterns that happen to suit our purposes. Bradley Efron Robert Tibshirani (1993) An Introduction to the Bootstrap -- Christophe Pouzat MAP5 - Mathématiques Appliquées à Paris 5 CNRS UMR 8145 45, rue des Saints-Pères 75006 PARIS France tel: +33142863828 mobile: +33662941034 web: http://www.biomedicale.univ-paris5.fr/physcerv/C_Pouzat.html Hi Riccardo, additionally, if you do not want to get too tightly bound to LaTeX, check out the ascii-package, e.g. #+begin_src R :results output org wrap :exports results library(ascii) ## from the lm help page: ctl - c(4.17,5.58,5.18,6.11,4.50,4.61,5.17,4.53,5.33,5.14) trt - c(4.81,4.17,4.41,3.59,5.87,3.83,6.03,4.89,4.32,4.69) group - gl(2,10,20, labels=c(Ctl,Trt)) weight - c(ctl, trt) lm.D9 - lm(weight ~ group) lm.D90 - lm(weight ~ group - 1) # omitting intercept print(ascii(anova(lm.D9)), type=org) #+end_src Cheers, Andreas