Re: [ESS] Can't load libraries after upgrading to R 3.3.2
Note also that the most recent version of JAGS is 4.2.0
(http://mcmc-jags.sourceforge.net/). It’s probably worth upgrading. JAGS is
available via homebrew if you want an easy way to install it and keep it up to
date.
Simon Bonner
Assistant Professor of Environmetrics/Director MMASc
Department of Statistical and Actuarial Sciences/Department of Biology
University of Western Ontario
Office: Western Science Centre rm 276
Email: sbonn...@uwo.ca | Telephone: 519-661-2111 x88205 | Fax: 519-661-3813
Twitter: @bonnerstatslab | Website: http://simon.bonners.ca/bonner-lab/wpblog/
On 2016-12-13, 6:42 PM, "ESS-help on behalf of ross.darn...@data61.csiro.au"
wrote:
A quick google found this
https://martynplummer.wordpress.com/2014/09/08/jags-3-4-0-for-mavericks/
Ross
-Original Message-
From: ESS-help [mailto:ess-help-boun...@r-project.org] On Behalf Of Gonçalo
Ferraz
Sent: Wednesday, 14 December 2016 2:58 AM
To: ess-help@r-project.org
Subject: [ESS] Can't load libraries after upgrading to R 3.3.2
Hi,
I just upgraded R to version 3.3.2 on a Mac OS X system. I suspect
something may have gone wrong with the installation (despite a ‘successfully
installed’ message) because the R.App is nowhere to be found.
Nevertheless, I can open R in ESS, which how I always use it. The problem
though, is I can’t install packages from the R command line within ESS. Here is
a sample error message:
> install.packages("rjags")
--- Please select a CRAN mirror for use in this session --- trying URL
'https://vps.fmvz.usp.br/CRAN/bin/macosx/mavericks/contrib/3.3/rjags_4-6.tgz'
<https://vps.fmvz.usp.br/CRAN/bin/macosx/mavericks/contrib/3.3/rjags_4-6.tgz'>
Content type 'application/x-gzip' length 249529 bytes (243 KB)
==
downloaded 243 KB
The downloaded binary packages are in
/var/folders/kf/zkk64rtj5197pzwq94qfls0wgn/T//RtmpuSb7P1/downloaded_packages
> library(rjags)
Loading required package: coda
Error : .onLoad failed in loadNamespace() for 'rjags', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object
'/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so,
10): Library not loaded: /usr/local/lib/libjags.4.dylib Referenced from:
/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so
Reason: image not found
Error: package or namespace load failed for ‘rjags’
This happens with other packages as well. Does anyone know what may be
going on?
Thank you,
Gonçalo
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Re: [ESS] Can't load libraries after upgrading to R 3.3.2
A quick google found this
https://martynplummer.wordpress.com/2014/09/08/jags-3-4-0-for-mavericks/
Ross
-Original Message-
From: ESS-help [mailto:ess-help-boun...@r-project.org] On Behalf Of Gonçalo
Ferraz
Sent: Wednesday, 14 December 2016 2:58 AM
To: ess-help@r-project.org
Subject: [ESS] Can't load libraries after upgrading to R 3.3.2
Hi,
I just upgraded R to version 3.3.2 on a Mac OS X system. I suspect something
may have gone wrong with the installation (despite a ‘successfully installed’
message) because the R.App is nowhere to be found.
Nevertheless, I can open R in ESS, which how I always use it. The problem
though, is I can’t install packages from the R command line within ESS. Here is
a sample error message:
> install.packages("rjags")
--- Please select a CRAN mirror for use in this session --- trying URL
'https://vps.fmvz.usp.br/CRAN/bin/macosx/mavericks/contrib/3.3/rjags_4-6.tgz'
<https://vps.fmvz.usp.br/CRAN/bin/macosx/mavericks/contrib/3.3/rjags_4-6.tgz'>
Content type 'application/x-gzip' length 249529 bytes (243 KB)
==
downloaded 243 KB
The downloaded binary packages are in
/var/folders/kf/zkk64rtj5197pzwq94qfls0wgn/T//RtmpuSb7P1/downloaded_packages
> library(rjags)
Loading required package: coda
Error : .onLoad failed in loadNamespace() for 'rjags', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object
'/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so,
10): Library not loaded: /usr/local/lib/libjags.4.dylib Referenced from:
/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so
Reason: image not found
Error: package or namespace load failed for ‘rjags’
This happens with other packages as well. Does anyone know what may be going on?
Thank you,
Gonçalo
[[alternative HTML version deleted]]
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Re: [ESS] Can't load libraries after upgrading to R 3.3.2
I'm sure this is unrelated to ESS. You did post to R-help, too, right?
I suspect the problem is entirely a Mx OS X problem. The error
message points to
/usr/local/lib/libjags.4.dylibdoes that file exist ?
On Tue, Dec 13, 2016 at 5:58 PM, Gonçalo Ferraz wrote:
> Hi,
>
> I just upgraded R to version 3.3.2 on a Mac OS X system. I suspect something
> may have gone wrong with the installation (despite a ‘successfully installed’
> message) because the R.App is nowhere to be found.
> Nevertheless, I can open R in ESS, which how I always use it. The problem
> though, is I can’t install packages from the R command line within ESS. Here
> is a sample error message:
>
>> install.packages("rjags")
> --- Please select a CRAN mirror for use in this session ---
> trying URL
> 'https://vps.fmvz.usp.br/CRAN/bin/macosx/mavericks/contrib/3.3/rjags_4-6.tgz'
>
> Content type 'application/x-gzip' length 249529 bytes (243 KB)
> ==
> downloaded 243 KB
>
> The downloaded binary packages are in
>
> /var/folders/kf/zkk64rtj5197pzwq94qfls0wgn/T//RtmpuSb7P1/downloaded_packages
>> library(rjags)
> Loading required package: coda
> Error : .onLoad failed in loadNamespace() for 'rjags', details:
> call: dyn.load(file, DLLpath = DLLpath, ...)
> error: unable to load shared object
> '/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so':
>
> dlopen(/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so,
> 10): Library not loaded: /usr/local/lib/libjags.4.dylib
> Referenced from:
> /Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so
> Reason: image not found
> Error: package or namespace load failed for ‘rjags’
>
> This happens with other packages as well. Does anyone know what may be going
> on?
>
> Thank you,
>
> Gonçalo
> [[alternative HTML version deleted]]
>
> __
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[ESS] Can't load libraries after upgrading to R 3.3.2
Hi,
I just upgraded R to version 3.3.2 on a Mac OS X system. I suspect something
may have gone wrong with the installation (despite a ‘successfully installed’
message) because the R.App is nowhere to be found.
Nevertheless, I can open R in ESS, which how I always use it. The problem
though, is I can’t install packages from the R command line within ESS. Here is
a sample error message:
> install.packages("rjags")
--- Please select a CRAN mirror for use in this session ---
trying URL
'https://vps.fmvz.usp.br/CRAN/bin/macosx/mavericks/contrib/3.3/rjags_4-6.tgz'
Content type 'application/x-gzip' length 249529 bytes (243 KB)
==
downloaded 243 KB
The downloaded binary packages are in
/var/folders/kf/zkk64rtj5197pzwq94qfls0wgn/T//RtmpuSb7P1/downloaded_packages
> library(rjags)
Loading required package: coda
Error : .onLoad failed in loadNamespace() for 'rjags', details:
call: dyn.load(file, DLLpath = DLLpath, ...)
error: unable to load shared object
'/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so':
dlopen(/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so,
10): Library not loaded: /usr/local/lib/libjags.4.dylib
Referenced from:
/Library/Frameworks/R.framework/Versions/3.3/Resources/library/rjags/libs/rjags.so
Reason: image not found
Error: package or namespace load failed for ‘rjags’
This happens with other packages as well. Does anyone know what may be going on?
Thank you,
Gonçalo
[[alternative HTML version deleted]]
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