dists/10.4/unstable/main/finkinfo/languages g95.info,1.7,1.8

2006-04-16 Thread Jeff Whitaker
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv26741

Modified Files:
g95.info 
Log Message:
New upstream version, added libg95.a symlink to %p/lib.


Index: g95.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/languages/g95.info,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -d -r1.7 -r1.8
--- g95.info14 Apr 2006 12:30:13 -  1.7
+++ g95.info16 Apr 2006 13:25:10 -  1.8
@@ -1,10 +1,10 @@
 Package: g95
 Version: 0.50
-Revision: 20060413
+Revision: 20060414
 Source: ftp://gcc.gnu.org/pub/gcc/releases/gcc-4.0.3/gcc-core-4.0.3.tar.bz2
 Source-MD5: 347231730fb44b609b69226c3e432d80
 Source2: ftp://ftp.cdc.noaa.gov/Public/jsw/g95/g95-%v-%r.tgz
-Source2-MD5: 91c5f814d34c99b689e4e0c66ef90391
+Source2-MD5: bac40bb9b22d1f8bd62f285b53fc3d89
 NoSourceDirectory: True
 NoSetCPPFLAGS: True
 NoSetLDFLAGS: True
@@ -61,6 +61,7 @@
  /bin/rm -f %i/INSTALL
  mkdir -p %i/share/doc/%n
  mv %i/G95Manual.pdf %i/share/doc/%n
+ ln -s %p/lib/gcc-lib/%m-apple-darwin${darwinvers}/${gccver}/libf95.a 
%i/lib/libg95.a
 
 License: GPL
 DocFiles: g95-%v/COPYING



---
This SF.Net email is sponsored by xPML, a groundbreaking scripting language
that extends applications into web and mobile media. Attend the live webcast
and join the prime developer group breaking into this new coding territory!
http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642
___
Fink-commits mailing list
Fink-commits@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/fink-commits


fink/perlmod/Fink NetAccess.pm,1.50,1.51 ChangeLog,1.1318,1.1319

2006-04-16 Thread Benjamin Reed
Update of /cvsroot/fink/fink/perlmod/Fink
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv27921/perlmod/Fink

Modified Files:
NetAccess.pm ChangeLog 
Log Message:
lookit that, CVS head had a bug

Index: NetAccess.pm
===
RCS file: /cvsroot/fink/fink/perlmod/Fink/NetAccess.pm,v
retrieving revision 1.50
retrieving revision 1.51
diff -u -d -r1.50 -r1.51
--- NetAccess.pm3 Jan 2006 20:14:46 -   1.50
+++ NetAccess.pm16 Apr 2006 13:27:02 -  1.51
@@ -267,7 +267,7 @@
if ($dryrun or ($result or not -f $file)) {
# failure, continue loop
} else {
-   if (defined $checksum and (not 
Fink::Checksum-validate($file, $checksum))) {
+   if (defined $checksum and (not 
Fink::Checksum-validate($file, $checksum, $checksum_type))) {
my %archive_sums = 
%{Fink::Checksum-get_all_checksums($file)};
print_breaking(The checksum of the file is 
incorrect. The most likely .
cause for this 
is a corrupted or incomplete download\n.

Index: ChangeLog
===
RCS file: /cvsroot/fink/fink/perlmod/Fink/ChangeLog,v
retrieving revision 1.1318
retrieving revision 1.1319
diff -u -d -r1.1318 -r1.1319
--- ChangeLog   10 Apr 2006 20:36:48 -  1.1318
+++ ChangeLog   16 Apr 2006 13:27:03 -  1.1319
@@ -1,3 +1,7 @@
+2006-04-16  Benjamin Reed  [EMAIL PROTECTED]
+
+   * NetAccess.pm: pass the checksum type when validating.
+
 2006-04-10  Dave Morrison  [EMAIL PROTECTED]
 
* Validation.pm: Check for %{PatchScript} using the correct case.



---
This SF.Net email is sponsored by xPML, a groundbreaking scripting language
that extends applications into web and mobile media. Attend the live webcast
and join the prime developer group breaking into this new coding territory!
http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642
___
Fink-commits mailing list
Fink-commits@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/fink-commits


dists/10.4/unstable/main/finkinfo/sci ncarg.info,1.3,1.4 ncarg.patch,1.3,1.4

2006-04-16 Thread Jeff Whitaker
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv28298

Added Files:
ncarg.info ncarg.patch 
Log Message:
Re-added to 10.4 tree - now works with intel.


--- NEW FILE: ncarg.patch ---
--- ncarg-4.3.1/ncarg.csh   Thu May  9 05:55:35 2002
+++ ncarg-4.3.1/ncarg.csh   Thu May  9 05:50:37 2002
@@ -0,0 +1,3 @@
+# ncarg.csh
+
+setenv   NCARG_ROOT   @FINKPREFIX@
--- ncarg-4.3.1/ncarg.shThu May  9 05:55:35 2002
+++ ncarg-4.3.1/ncarg.shThu May  9 05:50:37 2002
@@ -0,0 +1,4 @@
+# ncarg.sh
+
[EMAIL PROTECTED]@
+export NCARG_ROOT
--- ncarg-4.3.1/config/Site.local.orig  Thu Oct 31 06:29:10 2002
+++ ncarg-4.3.1/config/Site.local   Thu Oct 31 09:18:57 2002
@@ -0,0 +1,21 @@
+/*
+ * This file was created by the Configure script.
+ */
+
+#ifdef FirstSite
+
+#endif /* FirstSite */
+
+#ifdef SecondSite
+
+#define YmakeRoot $(PREFIX)
+#define ManRoot $(PREFIX)/share/man
+#define LibSearch [EMAIL PROTECTED]@/lib -L/usr/X11R6/lib
+#define IncSearch [EMAIL PROTECTED]@/include -I/usr/X11R6/include
+#define BuildRasterHDF FALSE
+#define MakeDepend /usr/X11R6/bin/makedepend
+#define HDFlib -lg2c
+#define COptimizeFlag  -O2
+#define FOptimizeFlag  -O2
+
+#endif /* SecondSite */
--- ncarg-4.3.1/ncarg2d/src/bin/scripts/ncargcc.csh.orig Thu May 30 15:04:00 
2002
+++ ncarg-4.3.1/ncarg2d/src/bin/scripts/ncargcc.csh Thu Oct 31 10:38:58 2002
@@ -46,7 +46,7 @@
 set libpath = -L$libdir $syslibdir
 set incpath = -I$incdir
 
-set libextra = 
+set libextra = -lg2c
 
 set newargv = $cc $defines $loadflags
 
--- ncarg/config/Darwin.orig2006-01-10 05:39:37.0 -0700
+++ ncarg/config/Darwin 2006-01-10 05:40:03.0 -0700
@@ -27,9 +27,9 @@
 #define Cdynamic 
 #define CppCommand '/usr/bin/cpp -traditional'
 #define CCompiler   gcc
-#define CtoFLibraries   -lg2c -lcc_dynamic
-#define ExtraSysLibraries   -lcc_dynamic
-#define FCompiler   g77
+#define CtoFLibraries   [EMAIL PROTECTED]@/lib -lg95
+#define ExtraSysLibraries 
+#define FCompiler   g95
 #define CcOptions  -ansi
 #define XToolLibrary-lXt -lSM -lICE
 #define BuildShared NO
--- ncarg-4.3.1/config/ymake.orig   Mon Oct 27 11:22:31 2003
+++ ncarg-4.3.1/config/ymakeMon Oct 27 11:22:49 2003
@@ -405,18 +405,10 @@
 caseDarwin:
 set os = $opsys
 
-switch ($mach[1])
-casePower:
-set model   = $mach
-set arch= $mach
-set sysincs = DARWIN
-set vendor  = Apple
-breaksw
-default:
-echo $0 : Unknown machine type  /dev/tty
-exit 1
-endsw
-
+set model   = $mach
+set arch= $mach
+set sysincs = DARWIN
+set vendor  = Apple
 breaksw
 
 case   CYGWIN:

--- NEW FILE: ncarg.info ---
Package: ncarg
Version: 4.4.1
Revision: 3
Source: http://ngwww.ucar.edu/ngbin/%n-%v.src.tar.gz
Source-MD5: f62f226acc8b5588ff3537f28ac85a7d
SourceDirectory: %n-%v
Conflicts: ralgcm (= 3.50-1)
BuildDepends: g95 (= 0.5-20060414), x11-dev
Depends: x11
PatchScript: 
  #!/bin/sh -e
  sed 's|@FINKPREFIX@|%p|g'  %a/%n.patch | patch -p1
  mv config/ymake config/ymake_ori  
  sed 's|DARWIN|Darwin|g'  config/ymake_ori  config/ymake 
  chmod a+x config/ymake

CompileScript: 
 (cd config; make -f Makefile.ini; cd ../; ./config/ymkmf)
 make PREFIX=%p Info Makefiles clean includes depend all 

InstallScript: 
make PREFIX=%i install
mkdir -p %i/etc/profile.d
install -m 755 ncarg.sh %i/etc/profile.d/
install -m 755 ncarg.csh %i/etc/profile.d/
mv %i/bin/ctrans %i/bin/ctrans.ncarg
mv %i/bin/ictrans %i/bin/ictrans.ncarg
mv %i/bin/idt %i/bin/idt.ncarg
mv %i/bin/med %i/bin/med.ncarg
mv %i/bin/ncargpath %i/bin/ncargpath.ncarg
mv %i/bin/ncarlogo2ps %i/bin/ncarlogo2ps.ncarg
mv %i/include/ncarg/c.h %i/include/ncarg/c.h.ncarg
mv %i/include/ncarg/gks.h %i/include/ncarg/gks.h.ncarg
mv %i/include/ncarg/ncargC.h %i/include/ncarg/ncargC.h.ncarg
mv %i/lib/ncarg/database/Earth..1.areas 
%i/lib/ncarg/database/Earth..1.areas.ncarg
mv %i/lib/ncarg/database/Earth..1.lines 
%i/lib/ncarg/database/Earth..1.lines.ncarg
mv %i/lib/ncarg/database/Earth..1.names 
%i/lib/ncarg/database/Earth..1.names.ncarg
mv %i/lib/ncarg/database/Earth..2.areas 
%i/lib/ncarg/database/Earth..2.areas.ncarg
mv %i/lib/ncarg/database/Earth..2.lines 
%i/lib/ncarg/database/Earth..2.lines.ncarg
mv %i/lib/ncarg/database/Earth..2.names 
%i/lib/ncarg/database/Earth..2.names.ncarg
mv %i/lib/ncarg/database/Earth..3.areas 
%i/lib/ncarg/database/Earth..3.areas.ncarg
mv %i/lib/ncarg/database/Earth..3.lines 
%i/lib/ncarg/database/Earth..3.lines.ncarg
mv %i/lib/ncarg/database/Earth..3.names 
%i/lib/ncarg/database/Earth..3.names.ncarg
mv %i/lib/ncarg/database/ezmap_area_ids 
%i/lib/ncarg/database/ezmap_area_ids.ncarg
mv %i/lib/ncarg/database/EzmapAreaInfo.CO 
%i/lib/ncarg/database/EzmapAreaInfo.CO.ncarg
mv 

experimental/jfmertens/crypto/finkinfo seamonkey.info,1.4,1.5 seamonkey.patch,1.2,1.3

2006-04-16 Thread Jean-Fran�ois Mertens
Update of /cvsroot/fink/experimental/jfmertens/crypto/finkinfo
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv27994

Modified Files:
seamonkey.info seamonkey.patch 
Log Message:
update to latest

Index: seamonkey.info
===
RCS file: /cvsroot/fink/experimental/jfmertens/crypto/finkinfo/seamonkey.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- seamonkey.info  13 Apr 2006 16:28:37 -  1.4
+++ seamonkey.info  16 Apr 2006 16:25:24 -  1.5
@@ -1,7 +1,7 @@
 Package: seamonkey
-Version: 1.0
-Revision: 2
-Source-MD5: e4f2edc5b2248d090303c70f5b28f210
+Version: 1.0.1
+Revision: 1
+Source-MD5: 6921464b5251cafd529c04c2b9f98d5f
 Source: mirror:custom:mozilla.org/%N/releases/%v/%N-%v.source.tar.bz2
 CustomMirror: 
   Primary: http://ftp.mozilla.org/pub/
@@ -17,6 +17,7 @@
 NoSetLDFLAGS: true
 SetLIBRARY_PATH: %p/lib
 NoSetCPPFLAGS: true
+SetCPPFLAGS: -I/%p/include/cairo
 PatchScript: 
  #!/bin/sh -ev
  sed 's|@PREFIX@|%p|g' %a/%n.patch | patch -p1
@@ -44,12 +45,21 @@
 ### Finally, ad-hoc correction of some install_names :
  perl -pi -e s;rules.mk;$\nEXTRA_DSO_LDOPTS := \\\$\(subst install_name 
\\\$\(mozappdir\)/,install_name 
\\\$\(mozappdir\)/ipc/modules/,\\\$\(EXTRA_DSO_LDOPTS\)\); 
ipc/ipcd/{extensions/{lock/src,transmngr},test}/module/Makefile.in
  perl -pi -e s;rules.mk;$\nEXTRA_DSO_LDOPTS := \\\$\(subst install_name 
\\\$\(mozappdir\)/,install_name 
\\\$\(mozappdir\)/plugins/,\\\$\(EXTRA_DSO_LDOPTS\)\); 
modules/plugin/samples/{default/unix,unixprinting}/Makefile.in
+### New with 1.0.1 :
+# 1) till this version, the zapping of '-DXP_MACCOSX' in the patch file (this 
goes back to the first versions of mozilla!)
+# ensured that no frameworks were needed on the link line... What is going on ?
+  perl -pi.bak -e 's,endif \# WINNT,$\nEXTRA_DSO_LDOPTS += 
-F/System/Library/Frameworks -framework CoreFoundation,' xpcom/build/Makefile.in
+# 2) Non-portable use of sed (not even useable with GNU sed !)
+  perl -pi.bak -e 's,sed \-E,/usr/bin/$,' xpcom/typelib/xpidl/Makefile.in
 
 ##
+#  --enable-default-toolkit=cairo-gtk2 not useable (also w/o 
--enable-system-cairo) :
+# nsCairoRenderingContext.cpp:99: error: 
'cairo_set_target_surface_DEPRECATED_BY_cairo_create' was not declared in this 
scope
+# : files in src refer (not always!) to a deprecated version cairo...
 ConfigureParams: --enable-xft --disable-freetype2 --enable-calendar 
--enable-optimize=-O3 -fstrict-aliasing --disable-debug 
--enable-application=suite --enable-macos-target=10.4 --enable-prebinding 
--enable-default-toolkit=gtk2 --with-pthreads 
--with-default-mozilla-five-home=%p/lib/%N --mandir=%p/share/man --enable-strip 
--enable-extensions=all --enable-image-decoders=all --enable-ldap-experimental 
--enable-xpctools --enable-necko-protocols=all --enable-efence --enable-ctl 
--enable-xinerama --with-system-mng --with-system-jpeg --with-system-png 
--with-system-zlib --enable-postscript --enable-ipv6 --enable-tests --with-x 
--enable-canvas --with-qtdir=%p --enable-pango --enable-svg 
--enable-update-packaging --enable-storage --enable-system-cairo 
--enable-profilesharing
 CompileScript: 
 #!/bin/sh -ev
-export CPATH=%p/include/cairo:%p/include
+export CPATH=%p/include
 env ac_cv_func_res_ninit=yes ./configure %c
 make -w
 
@@ -196,7 +206,7 @@
 %p/lib/%N/ipc/modules/libtransmgr.dylib 1.0.0 %n (= 1.0-1)
 %p/lib/%N/ipc/modules/libtestmodule.dylib 1.0.0 %n (= 1.0-1)
   
-#%p/lib/%N/libxlibrgb.dylib 1.0.0 %n (= 1.7.11-1)  seems to have 
disaappeared .. ?
+#%p/lib/%N/libxlibrgb.dylib 1.0.0 %n (= 1.7.11-1)  seems to have 
disappeared .. ?
 
 SplitOff2: 
   Package: %N-dev
@@ -223,6 +233,25 @@
 
 Added in the patch -x flag to the regxpcom command in update-%N-chrome, to get 
correct PostInstScripts. 
 (and use there same DYLD_LIBRARY_PATH as in %p/bin/%N).
+
+## A bunch of warnings I should still look at:
+warning: invalid access to non-static data member '...' of NULL object
+for:
+js/src/liveconnect/nsCLiveconnect.cpp
+layout/style/nsCSSPropList.h
+layout/style/nsCSSStyleRule.cpp
+layout/style/nsStyleStructList.h
+mailnews/base/src/nsMsgDBView.cpp
+modules/oji/src/nsJVMAuthTools.cpp
+modules/oji/src/nsJVMManager.cpp
+modules/oji/src/nsJVMPluginTagInfo.cpp
+modules/oji/src/scd.cpp
+netwerk/base/src/nsAsyncStreamListener.cpp
+netwerk/base/src/nsLoadGroup.cpp
+netwerk/base/src/nsRequestObserverProxy.h
+netwerk/base/src/nsSimpleURI.cpp
+rdf/base/src/nsInMemoryDataSource.cpp
+xpcom/ds/nsProperties.cpp
 
 DescPackaging: 
  Simpler _ even for user _ to have just %N, %N-dev and %N-shlibs

Index: seamonkey.patch
===
RCS file: /cvsroot/fink/experimental/jfmertens/crypto/finkinfo/seamonkey.patch,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- seamonkey.patch 12 Apr 2006 18:06:20 -  1.2
+++ seamonkey.patch 16 Apr 

web/xml/faq faq.en.xml,1.62,1.63

2006-04-16 Thread Alexander Hansen
Update of /cvsroot/fink/web/xml/faq
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv13103

Modified Files:
faq.en.xml 
Log Message:
FAQ 6.24:  Runtime error in a python module requires rebuilding the module 
as well as the python package.


Index: faq.en.xml
===
RCS file: /cvsroot/fink/web/xml/faq/faq.en.xml,v
retrieving revision 1.62
retrieving revision 1.63
diff -u -d -r1.62 -r1.63
--- faq.en.xml  1 Dec 2005 13:39:28 -   1.62
+++ faq.en.xml  16 Apr 2006 16:56:28 -  1.63
@@ -1438,6 +1438,7 @@
 ### execution of /sw/bin/python2.4 failed, exit code 1/codeblock
 pthe problem occurs because the codepython2*/code packages write 
the current codeMACOSX_DEPLOYMENT_TARGET/code to a configuration file when 
they're built and the python build utilities use this value when compiling 
modules. This means that if you have, for example, a codepython24/code 
package on 10.4 that was built on 10.3, either by upgrading 10.3 =gt; 10.4, or 
via the em10.4-transitional/em binary distribution, in which 
codepython24/code wasn't rebuilt, there will be a mismatch between what 
python thinks codeMACOSX_DEPLOYMENT_TARGET/code should be (10.3) and what 
it actually is (10.4)./p
 pThe fix is to rebuild the offending codepython/code package, 
e.g. codefink rebuild python24/code for the case above./p
+pFor runtime errors that give the same type of error message as above, 
rebuild the module after rebuilding the appropriate codepython2*/code 
package./p
   /answer
 /faqentry
   /chapter



---
This SF.Net email is sponsored by xPML, a groundbreaking scripting language
that extends applications into web and mobile media. Attend the live webcast
and join the prime developer group breaking into this new coding territory!
http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642
___
Fink-commits mailing list
Fink-commits@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/fink-commits


scripts/installer/dmg/faq faq.en.html,1.64,1.65

2006-04-16 Thread Alexander Hansen
Update of /cvsroot/fink/scripts/installer/dmg/faq
In directory 
sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv29498/scripts/installer/dmg/faq

Modified Files:
faq.en.html 
Log Message:
FAQ 6.24 update


Index: faq.en.html
===
RCS file: /cvsroot/fink/scripts/installer/dmg/faq/faq.en.html,v
retrieving revision 1.64
retrieving revision 1.65
diff -u -d -r1.64 -r1.65
--- faq.en.html 3 Jan 2006 18:59:32 -   1.64
+++ faq.en.html 16 Apr 2006 17:12:33 -  1.65
@@ -990,7 +990,7 @@
 depends = ['socketmodule.h'] )
   File /sw/src/root-python24-2.4.1-1/sw/lib/python2.4/distutils/core.py, 
line 166, in setup
 SystemExit: error: $MACOSX_DEPLOYMENT_TARGET mismatch: now 10.4 but 10.3 
during configure
-### execution of /sw/bin/python2.4 failed, exit code 1/prepthe problem 
occurs because the tt style=white-space: nowrap;python2*/tt packages 
write the current tt style=white-space: 
nowrap;MACOSX_DEPLOYMENT_TARGET/tt to a configuration file when they're 
built and the python build utilities use this value when compiling modules. 
This means that if you have, for example, a tt style=white-space: 
nowrap;python24/tt package on 10.4 that was built on 10.3, either by 
upgrading 10.3 =gt; 10.4, or via the b10.4-transitional/b binary 
distribution, in which tt style=white-space: nowrap;python24/tt wasn't 
rebuilt, there will be a mismatch between what python thinks tt 
style=white-space: nowrap;MACOSX_DEPLOYMENT_TARGET/tt should be (10.3) and 
what it actually is (10.4)./ppThe fix is to rebuild the offending tt 
style=white-space: nowrap;python/tt package, e.g. tt style=white-space: 
nowrap;fink rebuild python24/tt for the case above./p
 /div
+### execution of /sw/bin/python2.4 failed, exit code 1/prepthe problem 
occurs because the tt style=white-space: nowrap;python2*/tt packages 
write the current tt style=white-space: 
nowrap;MACOSX_DEPLOYMENT_TARGET/tt to a configuration file when they're 
built and the python build utilities use this value when compiling modules. 
This means that if you have, for example, a tt style=white-space: 
nowrap;python24/tt package on 10.4 that was built on 10.3, either by 
upgrading 10.3 =gt; 10.4, or via the b10.4-transitional/b binary 
distribution, in which tt style=white-space: nowrap;python24/tt wasn't 
rebuilt, there will be a mismatch between what python thinks tt 
style=white-space: nowrap;MACOSX_DEPLOYMENT_TARGET/tt should be (10.3) and 
what it actually is (10.4)./ppThe fix is to rebuild the offending tt 
style=white-space: nowrap;python/tt package, e.g. tt style=white-space: 
nowrap;fink rebuild python24/tt for the case above./p
 pFor runtime errors that give the same type of error message as above, 
rebuild the module after rebuilding the appropriate tt style=white-space: 
nowrap;python2*/tt package./p/div
 /a
   h2a name=comp-packages7 Compile Problems - Specific Packages/a/h2
 
@@ -1508,4 +1508,4 @@
 provided the document and this copyright notice remain complete and
 unmodified. Any commercial reproduction and any online publication
 requires the explicit consent of the author./phr
-pGenerated from i$Fink: faq.en.xml,v 1.62 2005/12/01 13:39:28 michga Exp 
$/i/p/body/html
+pGenerated from i$Fink: faq.en.xml,v 1.63 2006/04/16 16:56:28 alexkhansen 
Exp $/i/p/body/html



---
This SF.Net email is sponsored by xPML, a groundbreaking scripting language
that extends applications into web and mobile media. Attend the live webcast
and join the prime developer group breaking into this new coding territory!
http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642
___
Fink-commits mailing list
Fink-commits@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/fink-commits


web/faq comp-general.en.php,1.61,1.62 comp-packages.en.php,1.60,1.61 faq.en.html,1.66,1.67 general.en.php,1.59,1.60 index.en.php,1.65,1.66 mirrors.en.php,1.59,1.60 relations.en.php,1.59,1.60 upgrade-f

2006-04-16 Thread Alexander Hansen
Update of /cvsroot/fink/web/faq
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv29498/web/faq

Modified Files:
comp-general.en.php comp-packages.en.php faq.en.html 
general.en.php index.en.php mirrors.en.php relations.en.php 
upgrade-fink.en.php usage-fink.en.php usage-general.en.php 
usage-packages.en.php 
Log Message:
FAQ 6.24 update


Index: usage-general.en.php
===
RCS file: /cvsroot/fink/web/faq/usage-general.en.php,v
retrieving revision 1.60
retrieving revision 1.61
diff -u -d -r1.60 -r1.61
--- usage-general.en.php3 Jan 2006 18:59:33 -   1.60
+++ usage-general.en.php16 Apr 2006 17:12:33 -  1.61
@@ -1,7 +1,7 @@
 ?
 $title = F.A.Q. - Usage (1);
-$cvs_author = 'Author: michga';
-$cvs_date = 'Date: 2005/12/01 13:39:28';
+$cvs_author = 'Author: alexkhansen';
+$cvs_date = 'Date: 2006/04/16 16:56:28';
 $metatags = 'link rel=contents href=index.php?phpLang=en title=F.A.Q. 
Contentslink rel=next href=usage-packages.php?phpLang=en title=Package 
Usage Problems - Specific Packageslink rel=prev 
href=comp-packages.php?phpLang=en title=Compile Problems - Specific 
Packages';
 
 

Index: usage-fink.en.php
===
RCS file: /cvsroot/fink/web/faq/usage-fink.en.php,v
retrieving revision 1.61
retrieving revision 1.62
diff -u -d -r1.61 -r1.62
--- usage-fink.en.php   3 Jan 2006 18:59:33 -   1.61
+++ usage-fink.en.php   16 Apr 2006 17:12:33 -  1.62
@@ -1,7 +1,7 @@
 ?
 $title = F.A.Q. - Fink Usage;
-$cvs_author = 'Author: michga';
-$cvs_date = 'Date: 2005/12/01 13:39:28';
+$cvs_author = 'Author: alexkhansen';
+$cvs_date = 'Date: 2006/04/16 16:56:28';
 $metatags = 'link rel=contents href=index.php?phpLang=en title=F.A.Q. 
Contentslink rel=next href=comp-general.php?phpLang=en title=Compile 
Problems - Generallink rel=prev href=upgrade-fink.php?phpLang=en 
title=Upgrading Fink (version-specific troubleshooting)';
 
 

Index: mirrors.en.php
===
RCS file: /cvsroot/fink/web/faq/mirrors.en.php,v
retrieving revision 1.59
retrieving revision 1.60
diff -u -d -r1.59 -r1.60
--- mirrors.en.php  3 Jan 2006 18:59:33 -   1.59
+++ mirrors.en.php  16 Apr 2006 17:12:33 -  1.60
@@ -1,7 +1,7 @@
 ?
 $title = F.A.Q. - Mirrors;
-$cvs_author = 'Author: michga';
-$cvs_date = 'Date: 2005/12/01 13:39:28';
+$cvs_author = 'Author: alexkhansen';
+$cvs_date = 'Date: 2006/04/16 16:56:28';
 $metatags = 'link rel=contents href=index.php?phpLang=en title=F.A.Q. 
Contentslink rel=next href=upgrade-fink.php?phpLang=en title=Upgrading 
Fink (version-specific troubleshooting)link rel=prev 
href=relations.php?phpLang=en title=Relations with Other Projects';
 
 

Index: upgrade-fink.en.php
===
RCS file: /cvsroot/fink/web/faq/upgrade-fink.en.php,v
retrieving revision 1.59
retrieving revision 1.60
diff -u -d -r1.59 -r1.60
--- upgrade-fink.en.php 3 Jan 2006 18:59:33 -   1.59
+++ upgrade-fink.en.php 16 Apr 2006 17:12:33 -  1.60
@@ -1,7 +1,7 @@
 ?
 $title = F.A.Q. - Upgrading Fink;
-$cvs_author = 'Author: michga';
-$cvs_date = 'Date: 2005/12/01 13:39:28';
+$cvs_author = 'Author: alexkhansen';
+$cvs_date = 'Date: 2006/04/16 16:56:28';
 $metatags = 'link rel=contents href=index.php?phpLang=en title=F.A.Q. 
Contentslink rel=next href=usage-fink.php?phpLang=en title=Installing, 
Using and Maintaining Finklink rel=prev href=mirrors.php?phpLang=en 
title=Fink mirrors';
 
 

Index: index.en.php
===
RCS file: /cvsroot/fink/web/faq/index.en.php,v
retrieving revision 1.65
retrieving revision 1.66
diff -u -d -r1.65 -r1.66
--- index.en.php3 Jan 2006 18:59:33 -   1.65
+++ index.en.php16 Apr 2006 17:12:33 -  1.66
@@ -1,7 +1,7 @@
 ?
 $title = F.A.Q.;
-$cvs_author = 'Author: michga';
-$cvs_date = 'Date: 2005/12/01 13:39:28';
+$cvs_author = 'Author: alexkhansen';
+$cvs_date = 'Date: 2006/04/16 16:56:28';
 $metatags = 'link rel=contents href=index.php?phpLang=en title=F.A.Q. 
Contentslink rel=next href=general.php?phpLang=en title=General 
Questions';
 
 
@@ -77,7 +77,7 @@
 codegnome-session/code won't open a window manager./a/lilia 
href=usage-packages.php?phpLang=en#apple-x11-no-windowbar9.10 I upgraded to 
Apple's X11 in Panther and now my window title bars
 are missing./a/lilia 
href=usage-packages.php?phpLang=en#apple-x11-wants-xfree869.11 I installed 
Apple's X11 but Fink keeps asking to install
 XFree86 or X.org./a/lilia 
href=usage-packages.php?phpLang=en#wants-xfree86-on-upgrade9.12 I switched 
from the 10.2 Fink version to 10.2-gcc3.3 or 10.3, I have Apple's X11, and Fink 
asks me to install XFree86 or X.org./a/lilia 
href=usage-packages.php?phpLang=en#special-x11-debug9.13 I'm still 

dists/10.4/unstable/main/finkinfo/sci ncarg-intel.patch,NONE,1.1

2006-04-16 Thread Jeff Whitaker
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv2806

Added Files:
ncarg-intel.patch 
Log Message:
patch for intel


--- NEW FILE: ncarg-intel.patch ---
--- ncarg-4.3.1/ncarg.csh   Thu May  9 05:55:35 2002
+++ ncarg-4.3.1/ncarg.csh   Thu May  9 05:50:37 2002
@@ -0,0 +1,3 @@
+# ncarg.csh
+
+setenv   NCARG_ROOT   @FINKPREFIX@
--- ncarg-4.3.1/ncarg.shThu May  9 05:55:35 2002
+++ ncarg-4.3.1/ncarg.shThu May  9 05:50:37 2002
@@ -0,0 +1,4 @@
+# ncarg.sh
+
[EMAIL PROTECTED]@
+export NCARG_ROOT
--- ncarg-4.3.1/config/Site.local.orig  Thu Oct 31 06:29:10 2002
+++ ncarg-4.3.1/config/Site.local   Thu Oct 31 09:18:57 2002
@@ -0,0 +1,21 @@
+/*
+ * This file was created by the Configure script.
+ */
+
+#ifdef FirstSite
+
+#endif /* FirstSite */
+
+#ifdef SecondSite
+
+#define YmakeRoot $(PREFIX)
+#define ManRoot $(PREFIX)/share/man
+#define LibSearch [EMAIL PROTECTED]@/lib -L/usr/X11R6/lib
+#define IncSearch [EMAIL PROTECTED]@/include -I/usr/X11R6/include
+#define BuildRasterHDF FALSE
+#define MakeDepend /usr/X11R6/bin/makedepend
+#define HDFlib -lg95
+#define COptimizeFlag  -O2
+#define FOptimizeFlag  -O2
+
+#endif /* SecondSite */
--- ncarg-4.3.1/ncarg2d/src/bin/scripts/ncargcc.csh.orig Thu May 30 15:04:00 
2002
+++ ncarg-4.3.1/ncarg2d/src/bin/scripts/ncargcc.csh Thu Oct 31 10:38:58 2002
@@ -46,7 +46,7 @@
 set libpath = -L$libdir $syslibdir
 set incpath = -I$incdir
 
-set libextra = 
+set libextra = -lg95
 
 set newargv = $cc $defines $loadflags
 
--- ncarg-4.3.1/config/ymake.orig   Mon Oct 27 11:22:31 2003
+++ ncarg-4.3.1/config/ymakeMon Oct 27 11:22:49 2003
@@ -405,18 +405,10 @@
 caseDarwin:
 set os = $opsys
 
-switch ($mach[1])
-casePower:
-set model   = $mach
-set arch= $mach
-set sysincs = DARWIN
-set vendor  = Apple
-breaksw
-default:
-echo $0 : Unknown machine type  /dev/tty
-exit 1
-endsw
-
+set model   = $mach
+set arch= $mach
+set sysincs = DARWIN
+set vendor  = Apple
 breaksw
 
 case   CYGWIN:
--- ncarg/config/Darwin.orig2006-01-10 05:39:37.0 -0700
+++ ncarg/config/Darwin 2006-01-10 05:40:03.0 -0700
@@ -22,14 +22,15 @@
  * default setup.
  */
 #define HdfDefines  -DDARWIN
-#define StdDefines  -DSYSV -D_POSIX_SOURCE -D_XOPEN_SOURCE
+#define StdDefines  -DSYSV -D_POSIX_SOURCE -D_XOPEN_SOURCE -D__UNIXOS2__ 
-DByteSwapped
+#define ByteSwapped
 #define Cstatic 
 #define Cdynamic 
 #define CppCommand '/usr/bin/cpp -traditional'
 #define CCompiler   gcc
-#define CtoFLibraries   -lg2c -lcc_dynamic
-#define ExtraSysLibraries   -lcc_dynamic
-#define FCompiler   g77
+#define CtoFLibraries   [EMAIL PROTECTED]@/lib -lg95
+#define ExtraSysLibraries 
+#define FCompiler   g95
 #define CcOptions  -ansi
 #define XToolLibrary-lXt -lSM -lICE
 #define BuildShared NO



---
This SF.Net email is sponsored by xPML, a groundbreaking scripting language
that extends applications into web and mobile media. Attend the live webcast
and join the prime developer group breaking into this new coding territory!
http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642
___
Fink-commits mailing list
Fink-commits@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/fink-commits


dists/10.4/unstable/main/finkinfo/sci ncarg.info,1.4,1.5 ncarg.patch,1.4,1.5

2006-04-16 Thread Jeff Whitaker
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv3055

Modified Files:
ncarg.info ncarg.patch 
Log Message:
Fixed for intel.


Index: ncarg.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/ncarg.patch,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- ncarg.patch 16 Apr 2006 13:27:20 -  1.4
+++ ncarg.patch 16 Apr 2006 20:13:52 -  1.5
@@ -30,7 +30,7 @@
 +#define IncSearch [EMAIL PROTECTED]@/include -I/usr/X11R6/include
 +#define BuildRasterHDF FALSE
 +#define MakeDepend /usr/X11R6/bin/makedepend
-+#define HDFlib-lg2c
++#define HDFlib-lg95
 +#define COptimizeFlag  -O2
 +#define FOptimizeFlag  -O2
 +
@@ -42,25 +42,10 @@
  set incpath = -I$incdir
  
 -set libextra = 
-+set libextra = -lg2c
++set libextra = -lg95
  
  set newargv = $cc $defines $loadflags
  
 ncarg/config/Darwin.orig   2006-01-10 05:39:37.0 -0700
-+++ ncarg/config/Darwin2006-01-10 05:40:03.0 -0700
-@@ -27,9 +27,9 @@
- #define Cdynamic 
- #define CppCommand '/usr/bin/cpp -traditional'
- #define CCompiler   gcc
--#define CtoFLibraries   -lg2c -lcc_dynamic
--#define ExtraSysLibraries   -lcc_dynamic
--#define FCompiler   g77
-+#define CtoFLibraries   [EMAIL PROTECTED]@/lib -lg95
-+#define ExtraSysLibraries 
-+#define FCompiler   g95
- #define CcOptions  -ansi
- #define XToolLibrary-lXt -lSM -lICE
- #define BuildShared NO
 --- ncarg-4.3.1/config/ymake.orig  Mon Oct 27 11:22:31 2003
 +++ ncarg-4.3.1/config/ymake   Mon Oct 27 11:22:49 2003
 @@ -405,18 +405,10 @@
@@ -86,3 +71,24 @@
  breaksw
  
  case  CYGWIN:
+--- ncarg/config/Darwin.orig   2006-01-10 05:39:37.0 -0700
 ncarg/config/Darwin2006-01-10 05:40:03.0 -0700
+@@ -22,14 +22,14 @@
+  *default setup.
+  */
+ #define HdfDefines  -DDARWIN
+-#define StdDefines  -DSYSV -D_POSIX_SOURCE -D_XOPEN_SOURCE
++#define StdDefines  -DSYSV -D_POSIX_SOURCE -D_XOPEN_SOURCE
+ #define Cstatic 
+ #define Cdynamic 
+ #define CppCommand '/usr/bin/cpp -traditional'
+ #define CCompiler   gcc
+-#define CtoFLibraries   -lg2c -lcc_dynamic
+-#define ExtraSysLibraries   -lcc_dynamic
+-#define FCompiler   g77
++#define CtoFLibraries   [EMAIL PROTECTED]@/lib -lg95
++#define ExtraSysLibraries 
++#define FCompiler   g95
+ #define CcOptions  -ansi
+ #define XToolLibrary-lXt -lSM -lICE
+ #define BuildShared NO

Index: ncarg.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/ncarg.info,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -d -r1.4 -r1.5
--- ncarg.info  16 Apr 2006 13:27:20 -  1.4
+++ ncarg.info  16 Apr 2006 20:13:52 -  1.5
@@ -1,6 +1,6 @@
 Package: ncarg
 Version: 4.4.1
-Revision: 3
+Revision: 4
 Source: http://ngwww.ucar.edu/ngbin/%n-%v.src.tar.gz
 Source-MD5: f62f226acc8b5588ff3537f28ac85a7d
 SourceDirectory: %n-%v
@@ -9,7 +9,11 @@
 Depends: x11
 PatchScript: 
   #!/bin/sh -e
+  if [ %m = i386 ]; then 
+  sed 's|@FINKPREFIX@|%p|g'  %a/%n-intel.patch | patch -p1
+  else
   sed 's|@FINKPREFIX@|%p|g'  %a/%n.patch | patch -p1
+  fi
   mv config/ymake config/ymake_ori 
 
   sed 's|DARWIN|Darwin|g'  config/ymake_ori  config/ymake
 
   chmod a+x config/ymake



---
This SF.Net email is sponsored by xPML, a groundbreaking scripting language
that extends applications into web and mobile media. Attend the live webcast
and join the prime developer group breaking into this new coding territory!
http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642
___
Fink-commits mailing list
Fink-commits@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/fink-commits


dists/10.4/unstable/main/finkinfo/sci tcoffee.info,1.1,1.2 tcoffee.patch,1.1,1.2

2006-04-16 Thread Koen van der Drift
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv22451

Modified Files:
tcoffee.info tcoffee.patch 
Log Message:
new upstream version

Index: tcoffee.info
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- tcoffee.info20 Jan 2006 20:30:40 -  1.1
+++ tcoffee.info16 Apr 2006 22:56:05 -  1.2
@@ -1,20 +1,32 @@
 Package: tcoffee
-Version: 3.27
+Version: 3.93
 Revision: 1
 Source: 
http://igs-server.cnrs-mrs.fr/~cnotred/Packages/T-COFFEE_distribution_Version_%v.tar.gz
-Source-MD5: 747d907f4b87e07d7b1e670a2b263e23
+Source-MD5: 7ed431f44da16f88bbfc2c88bda5832c
 Sourcedirectory: T-COFFEE_distribution_Version_%v
 Depends: clustalw
-PatchScript: 
-  sed 's|@PREFIX@|%p|g'  %a/%n.patch | patch -p1
-  perl -pi.bak -e 's|-O3|-O1|g'  t_coffee_source/makefile
+Patch: %n.patch
+
+CompileScript: 
+ #!/bin/sh -ev
+ cd t_coffee_source
+ make -i CC=gcc USER_BIN=%i/bin all
+
 
-CompileScript: make
 InstallScript: 
- make install prefix=%i
+ mkdir -p %i/bin
+ cp bin/t_coffee %i/bin
+
  mkdir -p %i/share/%n
- cp -R example html %i/share/%n
+ mkdir -p %i/share/%n/t_coffee
+ mkdir -p %i/share/%n/t_coffee/cache
+ mkdir -p %i/share/%n/t_coffee/methods
+ mkdir -p %i/share/%n/t_coffee/tmp
+ cp -R example html test bin/test.pl %i/share/%n
+
+ %i/share/%n/test.pl
 
+
 DocFiles: doc/* license.txt
 RuntimeVars: 
  CLUSTALW_4_TCOFFEE: %p/bin/clustalw
@@ -27,7 +39,14 @@
 are also some enhancements for cDNA alignments.
 Previous maintainer: Jason Stajich
 
-DescUsage: t_coffee
+DescUsage: 
+ Before running T-coffee, issue the following two commands:
+ 
+ cp -R %p/share/%n/t_coffee/ ~/.t_coffee
+ sudo chown -R your_username ~/.t_coffee/
+ 
+ T-coffee can be started by the command t_coffee.
+
 License: GPL
 Maintainer: Koen van der Drift [EMAIL PROTECTED]
 Homepage: 
http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/t_coffee_home_page.html

Index: tcoffee.patch
===
RCS file: /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/tcoffee.patch,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- tcoffee.patch   20 Jan 2006 20:30:40 -  1.1
+++ tcoffee.patch   16 Apr 2006 22:56:05 -  1.2
@@ -1,44 +1,182 @@
-diff -Naur T-COFFEE_distribution_Version_2.66/Makefile 
T-COFFEE_distribution_Version_2.66-patched/Makefile
 T-COFFEE_distribution_Version_2.66/MakefileWed Dec 31 19:00:00 1969
-+++ T-COFFEE_distribution_Version_2.66-patched/MakefileThu Jun 23 
03:09:51 2005
-@@ -0,0 +1,9 @@
-+
-+all:
-+  (cd t_coffee_source; make)
-+
-+clean:
-+  (cd t_coffee_source; make clean)
-+
-+install: all
-+  (cd t_coffee_source; make install)
-diff -Naur T-COFFEE_distribution_Version_2.66/t_coffee_source/makefile 
T-COFFEE_distribution_Version_2.66-patched/t_coffee_source/makefile
 T-COFFEE_distribution_Version_2.66/t_coffee_source/makefileFri May 
27 07:41:41 2005
-+++ T-COFFEE_distribution_Version_2.66-patched/t_coffee_source/makefile
Thu Jun 23 03:23:28 2005
-@@ -1,9 +1,23 @@
- CC=cc
--t_coffee: util_constraints_list.o util_job_handling.o util_dps.o 
util_domain_constraints_list.o util_analyse_constraints_list.o 
aln_convertion_util.o util_declare.o hsearch.o random.o util_make_tree.o util.o 
reformat_struc.o reformat.o aln_compare.o io_func.o pb_util_read_sequence.o 
pb_util_read_seq_util.o tree_util.o util_graph_maln.o util_dp_clean_maln.o 
util_dp_ssec_pwaln.o util_dp_sim.o util_dp_mm_nw.o util_dp_gotoh_nw.o 
util_dp_suboptimal_nw.o util_dp_cdna_fasta_nw.o util_dp_generic_fasta_nw.o 
util_dp_fasta_nw.o util_dp_fasta_sw.o util_dp_gotoh_sw.o util_dp_est.o 
util_domain_dp_drivers.o util_dp_drivers.o util_domain_dp.o 
CUSTOM_evaluate_for_struc.o evaluate_for_struc.o evaluate_for_domain.o 
evaluate_dirichlet.o evaluate.o showpair.o fsa_dp.o pavie_dp.o t_coffee.o 
--  $(CC)  -o t_coffee util_constraints_list.o util_job_handling.o 
util_dps.o util_domain_constraints_list.o util_analyse_constraints_list.o 
aln_convertion_util.o util_declare.o hsearch.o random.o util_make_tree.o util.o 
reformat_struc.o reformat.o aln_compare.o io_func.o pb_util_read_sequence.o 
pb_util_read_seq_util.o tree_util.o util_graph_maln.o util_dp_clean_maln.o 
util_dp_ssec_pwaln.o util_dp_sim.o util_dp_mm_nw.o util_dp_gotoh_nw.o 
util_dp_suboptimal_nw.o util_dp_cdna_fasta_nw.o util_dp_generic_fasta_nw.o 
util_dp_fasta_nw.o util_dp_fasta_sw.o util_dp_gotoh_sw.o util_dp_est.o 
util_domain_dp_drivers.o util_dp_drivers.o util_domain_dp.o 
CUSTOM_evaluate_for_struc.o evaluate_for_struc.o evaluate_for_domain.o 
evaluate_dirichlet.o evaluate.o showpair.o fsa_dp.o pavie_dp.o t_coffee.o  -lm
--  mv  t_coffee  ../bin
-+prefix = @PREFIX@
-+bindir = 

dists/10.4/unstable/main/finkinfo/sci ccp4-gfortran.info,1.2,1.3

2006-04-16 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv4992

Modified Files:
ccp4-gfortran.info 
Log Message:
fixed compile problem for cpirate

Index: ccp4-gfortran.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/ccp4-gfortran.info,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -d -r1.2 -r1.3
--- ccp4-gfortran.info  12 Apr 2006 01:36:27 -  1.2
+++ ccp4-gfortran.info  17 Apr 2006 00:01:38 -  1.3
@@ -1,6 +1,6 @@
 Package: ccp4-gfortran
 Version: 6.0
-Revision: 1004
+Revision: 1005
 GCC: 4
 Source: ftp://ftp.ccp4.ac.uk/ccp4/%v.0/packed/ccp4-%v.0-core-src.tar.gz
 Source2: ftp://ftp.ccp4.ac.uk/ccp4/%v.0/packed/phaser-1.3.2-cctbx-src.tar.gz
@@ -9,8 +9,10 @@
 SourceDirectory: ccp4-%v
 Source3: http://chemistry.ucsc.edu/~wgscott/xtal/xtalfink/XCCPJiffy-custom.gz
 Source3-MD5: 21568dd2475505929573a3fd452c538f
+Source4: 
http://chemistry.ucsc.edu/~wgscott/xtal/xtalfink/ccp4_i686-apple-darwin8.6.1_libtool.gz
+Source4-MD5: e40104835406c75c8aee16471b2dd06e
 Depends: x11, tcltk, blt
-BuildDepends: gcc4 (= 4.0.3-1), f2c, fort77, tcltk-dev
+BuildDepends: gcc4, f2c, fort77, tcltk-dev
 Replaces: mosflm (= 6.2.3-2), mosflm-small (= 6.2.3-2), refmac (= 
5.1999-3), ccp4-shlibs, ccp4, ccp4-dev, bundle-ccp4, clipper-bin
 Conflicts: ccp4-shlibs, ccp4, ccp4-dev, bundle-ccp4
 NoSetCPPFLAGS: true
@@ -36,14 +38,17 @@
 # Set up XCCPJiffy wrapper scripts in $CCP4/etc
 # These are small wrapper scripts for xplot84driver and xloggraph generated by 
the patch
  chmod a+x etc/x*
-# Try to fix the dylib install path in configure
+# Fix the dylib install path in configure
 perl -pi.bak -e 's|\$rpath|%p/lib/ccp4-%v|g' **/configure
+ 
+ # We need the mmdbold clipper libraries built for COOT:
+perl -pi.bak -e 's|enable_mmdbold=no|enable_mmdbold=yes|g' 
lib/clipper/configure*
 
 

 CompileScript: 
 #!/bin/zsh -ef
 umask 0022
-# These are required for the build environment
+ # These are required for the build environment
 export TEMPXTAL=$PWD:h
 source include/ccp4.setup-zsh
 export DYLD_LIBRARY_PATH=$CLIB
@@ -53,8 +58,8 @@
 export 
PATH=/System/Library/Frameworks/Python.framework/Versions/Current/bin:$PATH
 export 
PYTHONHOME=/System/Library/Frameworks/Python.framework/Versions/Current
 export 
PYTHONPATH=/System/Library/Frameworks/Python.framework/Versions/Current/lib/python2.3
-# gfortran is actually used by default, but to ensure the right thing happens, 
specify it.
-# Build static libs only for now.
+ # gfortran is actually used by default, but to ensure the right thing 
happens, specify it.
+ # Build static libs only for now. (Problems with dylibs and g++-4).
 FC=gfortran FOPTIM=-O0 CC=%p/lib/gcc4/bin/gcc CXX=%p/lib/gcc4/bin/g++  
./configure --with-x Darwin
 # FC=gfortran ./configure --with-x --with-shared-libs --with-fftw=%p Darwin
 #  fix some post-configure bugs by getting rid of -lg2c
@@ -63,10 +68,21 @@
 # change molrep optimization:
 perl -pi.bak -e s|molrep_FLAGS='-fno-second-underscore 
-O1'|molrep_FLAGS='-fno-second-underscore -O0'|g src/Makefile
 
-perl -pi.bak -e 's|FC = g77 -fno-second-underscore||g' 
x-windows/XCCPJIFFY/Makefile
+# perl -pi.bak -e 's|FC = g77 -fno-second-underscore||g' 
x-windows/XCCPJIFFY/Makefile
+
+perl -pi.bak -e 's|%p/lib/gcc4/bin/||g' lib/clipper/**/Makefile*
+
+# Replace the ccp4 libtool file with one that works and compiles cpirate:
+cp ../ccp4_i686-apple-darwin8.6.1_libtool.gz  lib/clipper/libtool.gz 
+mv -f lib/clipper/libtool lib/clipper/libtool-dist
+gunzip lib/clipper/libtool.gz
+chmod a+x lib/clipper/libtool
+
+#
 make -i
 make -i install
-# 
+#
+
 # xloggraph will fail, but we will link it with fort77 below
 #
 # Make wrappers for xplot84driver and xloggraph, so rename the executables
@@ -91,11 +107,23 @@
 cp xloggraph $CBIN/xloggraph.exe
 cd ../..
 #
+# Cleanup:
+#
 # make realclean
 /bin/rm -f **/*.o
 /bin/rm -f **/*.bak
+/bin/rm -R src 
+/bin/rm -R x-windows 
+/bin/rm -R unsupported
+/bin/rm -R testcomp* 
+/bin/rm -R BINARY*
+cd $CLIB
+/bin/rm -f **/*.c 
+/bin/rm -f **/*.f 
+/bin/rm -f **/*.cpp
 echo Compile Phase Completed!
-echo There are $(command ls -1 $CBIN | wc -l) programs in $CBIN; there should 
be 200
+echo There are $(command ls -1 $CBIN | wc -l) programs in $CBIN; 
+echo there should be 200
 
 

 InstallScript: 
@@ -152,16 +180,16 @@
 # making scripts for %p/etc/profile.d  
  mkdir -p %i/etc/profile.d
 #
- echo source %p/share/xtal/ccp4-%v/include/ccp4.setup  
%i/etc/profile.d/ccp4.csh
+ echo source %p/share/xtal/ccp4-%v/include/ccp4.setup  
%i/etc/profile.d/ccp4.csh
  echo setenv CLIB %p/lib/ccp4-%v  
%i/etc/profile.d/ccp4.csh
 #
 
-echo 

dists/10.4/unstable/main/finkinfo/sci ccp4-gfortran.info,1.3,1.4

2006-04-16 Thread William Scott
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv10652

Modified Files:
ccp4-gfortran.info 
Log Message:
fixed compile problem for cpirate, intel arch

Index: ccp4-gfortran.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/sci/ccp4-gfortran.info,v
retrieving revision 1.3
retrieving revision 1.4
diff -u -d -r1.3 -r1.4
--- ccp4-gfortran.info  17 Apr 2006 00:01:38 -  1.3
+++ ccp4-gfortran.info  17 Apr 2006 00:09:55 -  1.4
@@ -1,6 +1,7 @@
 Package: ccp4-gfortran
 Version: 6.0
 Revision: 1005
+Architecture: i386  
 GCC: 4
 Source: ftp://ftp.ccp4.ac.uk/ccp4/%v.0/packed/ccp4-%v.0-core-src.tar.gz
 Source2: ftp://ftp.ccp4.ac.uk/ccp4/%v.0/packed/phaser-1.3.2-cctbx-src.tar.gz



---
This SF.Net email is sponsored by xPML, a groundbreaking scripting language
that extends applications into web and mobile media. Attend the live webcast
and join the prime developer group breaking into this new coding territory!
http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642
___
Fink-commits mailing list
Fink-commits@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/fink-commits


dists/10.4/unstable/main/finkinfo/libs/perlmods beacon-pm581.info,1.1,1.2

2006-04-16 Thread David R. Morrison
Update of /cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods
In directory sc8-pr-cvs1.sourceforge.net:/tmp/cvs-serv25616

Modified Files:
beacon-pm581.info 
Log Message:
missing Architecture tag


Index: beacon-pm581.info
===
RCS file: 
/cvsroot/fink/dists/10.4/unstable/main/finkinfo/libs/perlmods/beacon-pm581.info,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -d -r1.1 -r1.2
--- beacon-pm581.info   20 Jan 2006 20:21:21 -  1.1
+++ beacon-pm581.info   17 Apr 2006 05:04:29 -  1.2
@@ -1,6 +1,7 @@
 Package: beacon-pm581
 Version: 1.1-0
 Revision: 1
+Architecture: powerpc
 Maintainer: Rob Braun [EMAIL PROTECTED]
 Depends: perl581-core
 BuildDepends: perl581-core



---
This SF.Net email is sponsored by xPML, a groundbreaking scripting language
that extends applications into web and mobile media. Attend the live webcast
and join the prime developer group breaking into this new coding territory!
http://sel.as-us.falkag.net/sel?cmd=lnkkid=110944bid=241720dat=121642
___
Fink-commits mailing list
Fink-commits@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/fink-commits