Re: [Fink-devel] rasmol build error

2010-04-19 Thread Koen van der Drift 
Thanks, it works now.

- Koen.

On Apr 18, 2010, at 9:58 PM, Hanspeter Niederstrasser wrote:

 On 4/18/10 9:15 PM, Koen van der Drift wrote:
 Hi,

 After a fink update, rasmol rebuild, and I get the following error:

 gcc -o rasmol -Os -Wall -Wpointer-arith -no-cpp-precomp -L/usr/ 
 X11/
 lib   rasmol.o molecule.o abstree.o cmndline.o command.o
 transfor.orender.o repres.o  pixutils.o outfile.o
 script.oinfile.o tokens.o  cif_fract.o cif.o cif_ctonum.o
 cif_stx.omultiple.o vector.o wbrotate.o langsel_unix.o maps.o
 x11win.o  -lm -lXi -lXext -lX11  ../external_packages/
 CBFlib-0.8.1/lib/libcbf.a
 ../external_packages/CQRlib-1.0.3/
 cqrlib.o ../external_packages/CVector-1.0.3/CVector.o ../
 external_packages/NearTree-2.1.3/CNearTree.o
 ld warning: in ../external_packages/CVector-1.0.3/CVector.o, file is
 not of required architecture
 Undefined symbols:
_CVectorCreate, referenced from:
_CreateSurfaceBonds in molecule.o
_CreateSurfaceBonds in molecule.o

 My mistake.  The source files come with some prebuilt .o files, and  
 I was removing them (or at least supposed to), but I was passing the  
 wrong path to rm.  Try again after a selfupdate.

 Hanspeter


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[Fink-devel] rasmol build error

2010-04-18 Thread Koen van der Drift 
Hi,

After a fink update, rasmol rebuild, and I get the following error:

gcc -o rasmol -Os -Wall -Wpointer-arith -no-cpp-precomp -L/usr/X11/ 
lib   rasmol.o molecule.o abstree.o cmndline.o command.o  
transfor.orender.o repres.o  pixutils.o outfile.o  
script.oinfile.o tokens.o  cif_fract.o cif.o cif_ctonum.o  
cif_stx.omultiple.o vector.o wbrotate.o langsel_unix.o maps.o  
x11win.o  -lm -lXi -lXext -lX11 ../external_packages/ 
CBFlib-0.8.1/lib/libcbf.a   
../external_packages/CQRlib-1.0.3/ 
cqrlib.o../external_packages/CVector-1.0.3/CVector.o 
../ 
external_packages/NearTree-2.1.3/CNearTree.o
ld warning: in ../external_packages/CVector-1.0.3/CVector.o, file is  
not of required architecture
Undefined symbols:
   _CVectorCreate, referenced from:
   _CreateSurfaceBonds in molecule.o
   _CreateSurfaceBonds in molecule.o
   _ApplyMapShow in command.o
   _CNearTreeInsert in CNearTree.o
   _CNearTreeInsert in CNearTree.o
   _CNearTreeInsert in CNearTree.o
   _CNearTreeImmediateInsert in CNearTree.o
   _CNearTreeImmediateInsert in CNearTree.o
   _CNearTreeFindFarthest in CNearTree.o
   _CNearTreeNearest in CNearTree.o
   _CNearTreeFindInSphere in CNearTree.o
   _CNearTreeFindTreeInSphere in CNearTree.o
   _CNearTreeFindTreeInSphere in CNearTree.o
   _CNearTreeFindOutSphere in CNearTree.o
   _CNearTreeFindTreeOutSphere in CNearTree.o
   _CNearTreeFindTreeOutSphere in CNearTree.o
   _CNearTreeFindInAnnulus in CNearTree.o
   _CNearTreeFindTreeInAnnulus in CNearTree.o
   _CNearTreeFindTreeInAnnulus in CNearTree.o
   _CNearTreeFindKNearest in CNearTree.o
   _CNearTreeFindKNearest in CNearTree.o
   _CNearTreeFindKNearest in CNearTree.o
   _CNearTreeFindKTreeNearest in CNearTree.o
   _CNearTreeFindKTreeNearest in CNearTree.o
   _CNearTreeFindKFarthest in CNearTree.o
   _CNearTreeFindKFarthest in CNearTree.o
   _CNearTreeFindKFarthest in CNearTree.o
   _CNearTreeFindKTreeFarthest in CNearTree.o
   _CNearTreeFindKTreeFarthest in CNearTree.o
   _CVectorClear, referenced from:
   _CNearTreeFindInSphere in CNearTree.o
   _CNearTreeFindInSphere in CNearTree.o
   _CNearTreeFindOutSphere in CNearTree.o
   _CNearTreeFindOutSphere in CNearTree.o
   _CNearTreeFindInAnnulus in CNearTree.o
   _CNearTreeFindInAnnulus in CNearTree.o
   _CNearTreeFindKNearest in CNearTree.o
   _CNearTreeFindKNearest in CNearTree.o
   _CNearTreeFindKFarthest in CNearTree.o
   _CNearTreeFindKFarthest in CNearTree.o
   _CVectorSetSize, referenced from:
   _CNearTreeCompleteDelayedInsert in CNearTree.o
   _CNearTreeCompleteDelayedInsert in CNearTree.o
   _CVectorSetFlags, referenced from:
   _CNearTreeSortIn in CNearTree.o
   _CNearTreeSortIn in CNearTree.o
   _CNearTreeSortIn in CNearTree.o
   _CNearTreeSortIn in CNearTree.o
   _CVectorGetElement, referenced from:
   _CNearTreeCompleteDelayedInsert in CNearTree.o
   _CNearTreeCompleteDelayedInsert in CNearTree.o
   _CNearTreeFindFarthest in CNearTree.o
   _CNearTreeNearest in CNearTree.o
   _CNearTreeFindInSphere in CNearTree.o
   _CNearTreeFindOutSphere in CNearTree.o
   _CNearTreeFindInAnnulus in CNearTree.o
   _CNearTreeFindKNearest in CNearTree.o
   _CNearTreeFindKNearest in CNearTree.o
   _CNearTreeFindKNearest in CNearTree.o
   _CNearTreeFindKNearest in CNearTree.o
   _CNearTreeFindKFarthest in CNearTree.o
   _CNearTreeFindKFarthest in CNearTree.o
   _CNearTreeFindKFarthest in CNearTree.o
   _CNearTreeFindKFarthest in CNearTree.o
   _CVectorAddElement, referenced from:
   _CNearTreeInsert in CNearTree.o
   _CNearTreeInsert in CNearTree.o
   _CNearTreeInsert in CNearTree.o
   _CNearTreeImmediateInsert in CNearTree.o
   _CNearTreeImmediateInsert in CNearTree.o
   _CNearTreeFindFarthest in CNearTree.o
   _CNearTreeNearest in CNearTree.o
   _CNearTreeFindInSphere in CNearTree.o
   _CNearTreeFindInSphere in CNearTree.o
   _CNearTreeFindInSphere in CNearTree.o
   _CNearTreeFindInSphere in CNearTree.o
   _CNearTreeFindInSphere in CNearTree.o
   _CNearTreeFindOutSphere in CNearTree.o
   _CNearTreeFindOutSphere in CNearTree.o
   _CNearTreeFindOutSphere in CNearTree.o
   _CNearTreeFindOutSphere in CNearTree.o
   _CNearTreeFindOutSphere in CNearTree.o
   _CNearTreeFindInAnnulus in CNearTree.o
   _CNearTreeFindInAnnulus in CNearTree.o
   _CNearTreeFindInAnnulus in CNearTree.o
   _CNearTreeFindInAnnulus in CNearTree.o
   _CNearTreeFindInAnnulus in CNearTree.o
   _CNearTreeSortIn in CNearTree.o
   _CNearTreeSortIn in CNearTree.o
   _CNearTreeSortIn in CNearTree.o
   _CNearTreeFindKNearest in CNearTree.o
   _CNearTreeFindKNearest in CNearTree.o
   _CNearTreeFindKNearest

Re: [Fink-devel] rasmol build error

2010-04-18 Thread Hanspeter Niederstrasser 
On 4/18/10 9:15 PM, Koen van der Drift wrote:
 Hi,

 After a fink update, rasmol rebuild, and I get the following error:

 gcc -o rasmol -Os -Wall -Wpointer-arith -no-cpp-precomp -L/usr/X11/
 lib   rasmol.o molecule.o abstree.o cmndline.o command.o
 transfor.orender.o repres.o  pixutils.o outfile.o
 script.oinfile.o tokens.o  cif_fract.o cif.o cif_ctonum.o
 cif_stx.omultiple.o vector.o wbrotate.o langsel_unix.o maps.o
 x11win.o  -lm -lXi -lXext -lX11   ../external_packages/
 CBFlib-0.8.1/lib/libcbf.a 
 ../external_packages/CQRlib-1.0.3/
 cqrlib.o  ../external_packages/CVector-1.0.3/CVector.o ../
 external_packages/NearTree-2.1.3/CNearTree.o
 ld warning: in ../external_packages/CVector-1.0.3/CVector.o, file is
 not of required architecture
 Undefined symbols:
 _CVectorCreate, referenced from:
 _CreateSurfaceBonds in molecule.o
 _CreateSurfaceBonds in molecule.o

My mistake.  The source files come with some prebuilt .o files, and I 
was removing them (or at least supposed to), but I was passing the wrong 
path to rm.  Try again after a selfupdate.

Hanspeter

--
Download Intel#174; Parallel Studio Eval
Try the new software tools for yourself. Speed compiling, find bugs
proactively, and fine-tune applications for parallel performance.
See why Intel Parallel Studio got high marks during beta.
http://p.sf.net/sfu/intel-sw-dev
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