Re: [Fink-users] Failed: phase compiling: graphviz-2.26.3-10 failed

2014-10-22 Thread Jack Howarth 
Dave,
 The following change works here on Yosemite...


Index: graphviz.info

===

RCS file: /cvsroot/fink/dists/10.7/stable/main/finkinfo/graphics/
graphviz.info,v

retrieving revision 1.18

diff -r1.18 graphviz.info

31a32,34

> if [ "`uname -r | cut -d. -f1`" -gt "13" ]; then

>   perl -pi -e 's|#include ||g'
plugin/quartz/gvloadimage_quartz.c

> fi


On Wed, Oct 22, 2014 at 5:50 PM, David Fang  wrote:

> Dominique,
> Jack Howarth suggested something like the following:
>
> -isysroot `xcode-select --print-path`/Platforms/MacOSX.platform/Developer/
> SDKs/MacOSX10.7.sdk
>
> to insert into CFLAGS.  Do you have the 10.9 SDK on your 10.10 setup to
> test this?  If this works, I suppose we could conditionally pass it,
> depending on OS version, but this solution doesn't seem sustainable as SDKs
> get dropped in the future.
>
> Fang
>
>  Installing graphviz-2.26.3-10 on
>>
>> Package manager version: 0.38.1
>> Distribution version: selfupdate-rsync Wed Oct 22 20:10:51 2014, 10.10,
>> x86_64
>> Trees: local/main stable/main stable/crypto
>> Xcode.app: 6.1
>> Xcode command-line tools: 6.1.0.0.1.1413057044
>> Max. Fink build jobs:  8
>>
>> failed with
>>
>> ...
>> libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I../..
>> -I../../lib/common -I../../lib/pathplan -I../../lib/gvc -I../../lib/graph
>> -I../../lib/cdt -I/System/Library/Frameworks/
>> ApplicationServices.framework/Versions/A/Frameworks/
>> CoreGraphics.framework/Versions/A/Headers -I/Library/Java/
>> JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/include
>> -I/sw64/lib/ocaml -idirafter /System/Library/Frameworks/
>> Ruby.framework/Versions/2.0/Headers/ruby -I/sw64/include -I/sw64/include
>> -g -O2 -fno-common -Wall -MT gvrender_quartz.lo -MD -MP -MF
>> .deps/gvrender_quartz.Tpo -c gvrender_quartz.c  -fno-common -DPIC -o
>> .libs/gvrender_quartz.o
>> gvloadimage_quartz.c:27:10: fatal error: 'CGGLContext.h' file not found
>> #include 
>> ^
>> 1 error generated.
>> make[3]: *** [gvloadimage_quartz.lo] Error 1
>> make[3]: *** Waiting for unfinished jobs
>> mv -f .deps/GVTextLayout.Tpo .deps/GVTextLayout.Plo
>> mv -f .deps/gvplugin_quartz.Tpo .deps/gvplugin_quartz.Plo
>> mv -f .deps/gvdevice_quartz.Tpo .deps/gvdevice_quartz.Plo
>> mv -f .deps/gvtextlayout_quartz.Tpo .deps/gvtextlayout_quartz.Plo
>> mv -f .deps/gvrender_quartz.Tpo .deps/gvrender_quartz.Plo
>> make[2]: *** [all-recursive] Error 1
>> make[1]: *** [all-recursive] Error 1
>> make: *** [all] Error 2
>> ### execution of /tmp/fink.v45Gw failed, exit code 2
>> ### execution of /tmp/fink.9xV0C failed, exit code 2
>> Removing runtime build-lock...
>> Removing build-lock package...
>> /sw64/bin/dpkg-lockwait -r fink-buildlock-graphviz-2.26.3-10
>> (Reading database ... 165283 files and directories currently installed.)
>> Removing fink-buildlock-graphviz-2.26.3-10 ...
>> Reading buildlock packages...
>> /sw64/bin/dpkg-lockwait -i /sw64/fink/dists/stable/main/
>> binary-darwin-x86_64/languages/tcltk-dev_8.6.1-104_darwin-x86_64.deb
>> Selecting previously deselected package tcltk-dev.
>> (Reading database ... 165282 files and directories currently installed.)
>> Unpacking tcltk-dev (from .../tcltk-dev_8.6.1-104_darwin-x86_64.deb) ...
>> Setting up tcltk-dev (8.6.1-104) ...
>>
>> TIA
>>
>> Dominique
>>
>> 
>> --
>> ___
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>>
> --
> David Fang
> http://www.csl.cornell.edu/~fang/
>
>
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Re: [Fink-users] Failed: phase compiling: graphviz-2.26.3-10 failed

2014-10-22 Thread David Fang 
Dominique,
Jack Howarth suggested something like the following:

-isysroot `xcode-select 
--print-path`/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.7.sdk

to insert into CFLAGS.  Do you have the 10.9 SDK on your 10.10 setup to 
test this?  If this works, I suppose we could conditionally pass it, 
depending on OS version, but this solution doesn't seem sustainable as 
SDKs get dropped in the future.

Fang

> Installing graphviz-2.26.3-10 on
>
> Package manager version: 0.38.1
> Distribution version: selfupdate-rsync Wed Oct 22 20:10:51 2014, 10.10, x86_64
> Trees: local/main stable/main stable/crypto
> Xcode.app: 6.1
> Xcode command-line tools: 6.1.0.0.1.1413057044
> Max. Fink build jobs:  8
>
> failed with
>
> ...
> libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I../.. -I../../lib/common 
> -I../../lib/pathplan -I../../lib/gvc -I../../lib/graph -I../../lib/cdt 
> -I/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Headers
>  -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/include 
> -I/sw64/lib/ocaml -idirafter 
> /System/Library/Frameworks/Ruby.framework/Versions/2.0/Headers/ruby 
> -I/sw64/include -I/sw64/include -g -O2 -fno-common -Wall -MT 
> gvrender_quartz.lo -MD -MP -MF .deps/gvrender_quartz.Tpo -c gvrender_quartz.c 
>  -fno-common -DPIC -o .libs/gvrender_quartz.o
> gvloadimage_quartz.c:27:10: fatal error: 'CGGLContext.h' file not found
> #include 
> ^
> 1 error generated.
> make[3]: *** [gvloadimage_quartz.lo] Error 1
> make[3]: *** Waiting for unfinished jobs
> mv -f .deps/GVTextLayout.Tpo .deps/GVTextLayout.Plo
> mv -f .deps/gvplugin_quartz.Tpo .deps/gvplugin_quartz.Plo
> mv -f .deps/gvdevice_quartz.Tpo .deps/gvdevice_quartz.Plo
> mv -f .deps/gvtextlayout_quartz.Tpo .deps/gvtextlayout_quartz.Plo
> mv -f .deps/gvrender_quartz.Tpo .deps/gvrender_quartz.Plo
> make[2]: *** [all-recursive] Error 1
> make[1]: *** [all-recursive] Error 1
> make: *** [all] Error 2
> ### execution of /tmp/fink.v45Gw failed, exit code 2
> ### execution of /tmp/fink.9xV0C failed, exit code 2
> Removing runtime build-lock...
> Removing build-lock package...
> /sw64/bin/dpkg-lockwait -r fink-buildlock-graphviz-2.26.3-10
> (Reading database ... 165283 files and directories currently installed.)
> Removing fink-buildlock-graphviz-2.26.3-10 ...
> Reading buildlock packages...
> /sw64/bin/dpkg-lockwait -i 
> /sw64/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-dev_8.6.1-104_darwin-x86_64.deb
> Selecting previously deselected package tcltk-dev.
> (Reading database ... 165282 files and directories currently installed.)
> Unpacking tcltk-dev (from .../tcltk-dev_8.6.1-104_darwin-x86_64.deb) ...
> Setting up tcltk-dev (8.6.1-104) ...
>
> TIA
>
> Dominique
>
> --
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-- 
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http://www.csl.cornell.edu/~fang/


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Re: [Fink-users] Failed: phase compiling: graphviz-2.26.3-10 failed

2014-10-22 Thread David Fang 
Thanks for the report, Dominique.
I still don't have 10.10 (or 10.9), so I'll need to ask for help in 
patching/fixing this.

Fang

> Installing graphviz-2.26.3-10 on
>
> Package manager version: 0.38.1
> Distribution version: selfupdate-rsync Wed Oct 22 20:10:51 2014, 10.10, x86_64
> Trees: local/main stable/main stable/crypto
> Xcode.app: 6.1
> Xcode command-line tools: 6.1.0.0.1.1413057044
> Max. Fink build jobs:  8
>
> failed with
>
> ...
> libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I../.. -I../../lib/common 
> -I../../lib/pathplan -I../../lib/gvc -I../../lib/graph -I../../lib/cdt 
> -I/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Headers
>  -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/include 
> -I/sw64/lib/ocaml -idirafter 
> /System/Library/Frameworks/Ruby.framework/Versions/2.0/Headers/ruby 
> -I/sw64/include -I/sw64/include -g -O2 -fno-common -Wall -MT 
> gvrender_quartz.lo -MD -MP -MF .deps/gvrender_quartz.Tpo -c gvrender_quartz.c 
>  -fno-common -DPIC -o .libs/gvrender_quartz.o
> gvloadimage_quartz.c:27:10: fatal error: 'CGGLContext.h' file not found
> #include 
> ^
> 1 error generated.
> make[3]: *** [gvloadimage_quartz.lo] Error 1
> make[3]: *** Waiting for unfinished jobs
> mv -f .deps/GVTextLayout.Tpo .deps/GVTextLayout.Plo
> mv -f .deps/gvplugin_quartz.Tpo .deps/gvplugin_quartz.Plo
> mv -f .deps/gvdevice_quartz.Tpo .deps/gvdevice_quartz.Plo
> mv -f .deps/gvtextlayout_quartz.Tpo .deps/gvtextlayout_quartz.Plo
> mv -f .deps/gvrender_quartz.Tpo .deps/gvrender_quartz.Plo
> make[2]: *** [all-recursive] Error 1
> make[1]: *** [all-recursive] Error 1
> make: *** [all] Error 2
> ### execution of /tmp/fink.v45Gw failed, exit code 2
> ### execution of /tmp/fink.9xV0C failed, exit code 2
> Removing runtime build-lock...
> Removing build-lock package...
> /sw64/bin/dpkg-lockwait -r fink-buildlock-graphviz-2.26.3-10
> (Reading database ... 165283 files and directories currently installed.)
> Removing fink-buildlock-graphviz-2.26.3-10 ...
> Reading buildlock packages...
> /sw64/bin/dpkg-lockwait -i 
> /sw64/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-dev_8.6.1-104_darwin-x86_64.deb
> Selecting previously deselected package tcltk-dev.
> (Reading database ... 165282 files and directories currently installed.)
> Unpacking tcltk-dev (from .../tcltk-dev_8.6.1-104_darwin-x86_64.deb) ...
> Setting up tcltk-dev (8.6.1-104) ...
>
> TIA
>
> Dominique
>
> --
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-- 
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http://www.csl.cornell.edu/~fang/


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Re: [Fink-users] Fink Commander

2014-10-22 Thread Doug Wade 

Should have thought about this further before bothering you. 
Fix was simply to install the latest version of Perl and change the path to 
perl to the correct /sw/bin/perl5.16.2

> On Oct 22, 2014, at 12:12 PM, Doug Wade  wrote:
> 
> I’ve got Fink up and running after upgrading to OS X 10.10 and the only issue 
> I seem to see is Fink Commander being stuck in “Updating the table data”.
> Fink Commander is really really old and I’m wondering if there is a fix to 
> get it working again?
> I looked at the FinkCommander mailing list on SourceForge and see some email 
> exchanges back in March this year and a potential fix 
> "Regarding the issue with FinkCommander I've solved it by changing the path
> of PERL in the FinkCommander preferences."
> 
> Do you happen to know what this change to the path is? I’ll poke around and 
> see if I can figure it out in the meantime. 
> 
> Wade
> doug_w...@shaw.ca 
> 
> 
> 

Doug Wade
doug_w...@shaw.ca



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[Fink-users] Fink Commander

2014-10-22 Thread Doug Wade 
I’ve got Fink up and running after upgrading to OS X 10.10 and the only issue I 
seem to see is Fink Commander being stuck in “Updating the table data”.
Fink Commander is really really old and I’m wondering if there is a fix to get 
it working again?
I looked at the FinkCommander mailing list on SourceForge and see some email 
exchanges back in March this year and a potential fix 
"Regarding the issue with FinkCommander I've solved it by changing the path
of PERL in the FinkCommander preferences."

Do you happen to know what this change to the path is? I’ll poke around and see 
if I can figure it out in the meantime. 

Wade
doug_w...@shaw.ca



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[Fink-users] Failed: phase compiling: graphviz-2.26.3-10 failed

2014-10-22 Thread Dominique Dhumieres 
Installing graphviz-2.26.3-10 on

Package manager version: 0.38.1
Distribution version: selfupdate-rsync Wed Oct 22 20:10:51 2014, 10.10, x86_64
Trees: local/main stable/main stable/crypto
Xcode.app: 6.1
Xcode command-line tools: 6.1.0.0.1.1413057044
Max. Fink build jobs:  8

failed with

...
libtool: compile:  gcc -DHAVE_CONFIG_H -I. -I../.. -I../.. -I../../lib/common 
-I../../lib/pathplan -I../../lib/gvc -I../../lib/graph -I../../lib/cdt 
-I/System/Library/Frameworks/ApplicationServices.framework/Versions/A/Frameworks/CoreGraphics.framework/Versions/A/Headers
 -I/Library/Java/JavaVirtualMachines/jdk1.8.0_25.jdk/Contents/Home/include 
-I/sw64/lib/ocaml -idirafter 
/System/Library/Frameworks/Ruby.framework/Versions/2.0/Headers/ruby 
-I/sw64/include -I/sw64/include -g -O2 -fno-common -Wall -MT gvrender_quartz.lo 
-MD -MP -MF .deps/gvrender_quartz.Tpo -c gvrender_quartz.c  -fno-common -DPIC 
-o .libs/gvrender_quartz.o
gvloadimage_quartz.c:27:10: fatal error: 'CGGLContext.h' file not found
#include 
 ^
1 error generated.
make[3]: *** [gvloadimage_quartz.lo] Error 1
make[3]: *** Waiting for unfinished jobs
mv -f .deps/GVTextLayout.Tpo .deps/GVTextLayout.Plo
mv -f .deps/gvplugin_quartz.Tpo .deps/gvplugin_quartz.Plo
mv -f .deps/gvdevice_quartz.Tpo .deps/gvdevice_quartz.Plo
mv -f .deps/gvtextlayout_quartz.Tpo .deps/gvtextlayout_quartz.Plo
mv -f .deps/gvrender_quartz.Tpo .deps/gvrender_quartz.Plo
make[2]: *** [all-recursive] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all] Error 2
### execution of /tmp/fink.v45Gw failed, exit code 2
### execution of /tmp/fink.9xV0C failed, exit code 2
Removing runtime build-lock...
Removing build-lock package...
/sw64/bin/dpkg-lockwait -r fink-buildlock-graphviz-2.26.3-10
(Reading database ... 165283 files and directories currently installed.)
Removing fink-buildlock-graphviz-2.26.3-10 ...
Reading buildlock packages...
/sw64/bin/dpkg-lockwait -i 
/sw64/fink/dists/stable/main/binary-darwin-x86_64/languages/tcltk-dev_8.6.1-104_darwin-x86_64.deb
Selecting previously deselected package tcltk-dev.
(Reading database ... 165282 files and directories currently installed.)
Unpacking tcltk-dev (from .../tcltk-dev_8.6.1-104_darwin-x86_64.deb) ...
Setting up tcltk-dev (8.6.1-104) ...

TIA

Dominique

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[Fink-users] cernlib and llvm-gcc42 dependency

2014-10-22 Thread Giuliano Franchetti 
Hi to all, 

I have the fink working well under yosemite, but few packages that report 
the same type  problem. For example the cernlib give me 

===
giuliano@fairnbg021:/Users/giuliano/bin> fink install cernlib
Password:
Information about 9901 packages read in 1 seconds.
Can't resolve dependency "llvm-gcc42" for package "cernlib2006-2006b-24" (no 
matching packages/versions found)
Exiting with failure.
giuliano@fairnbg021:/Users/giuliano/bin> 


The same problem appear if I want to install xfig. 

What should I do?  How can I create llvm-gcc42? 

Thanks for the help. 


Giuliano 




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Re: [Fink-users] gcc49 build problem was Re: problem with Yosemite

2014-10-22 Thread Giuliano Franchetti 
Hello Alexander, 

your suggestions worked well: 
I installed the xcode command line, and re-installed xquartz. 

Thank you very much.

Giuliano



> On 21 Oct 2014, at 15:41, Alexander Hansen  
> wrote:
> 
> On 10/21/14, 5:38 AM, Giuliano Franchetti wrote:
>> Hi,
>> 
>> I have re-installed the fink distribution after updating my Mac to
>> Yosemite.
>> There are problems I do not know how to solve: several packages are not
>> compiled.
>> 
>> Thanks for the help
>> 
>> Giuliano
>> 
>> 
>> 
> 
> 
> 
>> during installation gcc49 seems to have a problem as well
>> ==
>> `/sw/src/fink.build/gcc49-4.9.1-1000/darwin_objdir'
>> make[1]: *** [stage1-bubble] Error 2
>> make[1]: Leaving directory
>> `/sw/src/fink.build/gcc49-4.9.1-1000/darwin_objdir'
>> make: *** [bootstrap-lean] Error 2
>> ### execution of /tmp/fink.znXiz failed, exit code 2
>> ### execution of /tmp/fink._qyw6 failed, exit code 2
>> Removing runtime build-lock...
>> Removing build-lock package...
>> /sw/bin/dpkg-lockwait -r fink-buildlock-gcc49-4.9.1-1000
>> (Reading database ... 17642 files and directories currently installed.)
>> Removing fink-buildlock-gcc49-4.9.1-1000 ...
>> Failed: phase compiling: gcc49-4.9.1-1000 failed
>> 
>> Before reporting any errors, please run "fink selfupdate" and try again.
>> Also try using "fink configure" to set your maximum build jobs to 1 and
>> attempt to build the package again.
>> If you continue to have issues, please check to see if the FAQ on Fink's
>> website solves the problem.  If not, ask on one (not both, please) of
>> these mailing lists:
>> 
>> The Fink Users List > >
>> The Fink Beginners List > >,
>> 
>> with a carbon copy to the maintainer:
>> 
>> Jack Howarth > >
>> 
>> Note that this is preferable to emailing just the maintainer directly,
>> since most fink package maintainers do not have access to all possible
>> hardware and software configurations.
>> 
>> Please try to include the complete error message in your report.  This
>> generally consists of a compiler line starting with e.g. "gcc" or "g++"
>> followed by the actual error output from the compiler.
>> 
>> Also include the following system information:
>> Package manager version: 0.38.1
>> Distribution version: selfupdate-cvs Tue Oct 21 14:10:01 2014, 10.10, x86_64
>> Trees: local/main stable/main stable/crypto
>> Xcode.app: 6.0.1
>> Xcode command-line tools: 6.1.0.0.1.1413057044
>> Max. Fink build jobs:  2
>> =
>> 
>> 
>> ---
>> Giuliano Franchetti
>> 
>> Primary Beams / Beam Physik
>> 
>> Office: C27 3.018
>> phone:   +49 6159 71 1535
>> fax: +49 6159 71 3099
>> e-mail: g.franche...@gsi.de 
>> http://web-docs.gsi.de/~giuliano
>> 
>> --
>> GSI Helmholtzzentrum für Schwerionenforschung GmbH
>> Planckstraße 1
>> 64291 Darmstadt
>> www.gsi.de
>> 
>> Gesellschaft mit beschränkter Haftung
>> Sitz der Gesellschaft: Darmstadt
>> Handelsregister: Amtsgericht Darmstadt, HRB 1528
>> 
>> Geschäftsführung: Professor Dr. Dr. h.c. mult. Horst Stöcker,
>> Dr.-Ing. Jürgen Henschel
>> 
>> Vorsitzende des Aufsichtsrates: Dr. Beatrix Vierkorn-Rudolph
>> Stellvertreter: Ministerialdirigent Dr. Rolf Bernhardt
>> 
>> 
>> 
> 
> What you posted is after the actual error and doesn't really have any 
> debugging information in it.  However, if indeed you have the wrong 
> command-line tools, then that might account for what you're seeing in gcc49.
> 
> -- 
> Alexander Hansen, Ph.D.
> Fink User Liaison
> My package updates: http://finkakh.wordpress.com/

---
Giuliano Franchetti 

Primary Beams / Beam Physik

Office: C27 3.018
phone:   +49 6159 71 1535
fax: +49 6159 71 3099
e-mail:g.franche...@gsi.de
http://web-docs.gsi.de/~giuliano

--
GSI Helmholtzzentrum für Schwerionenforschung GmbH 
Planckstraße 1 
64291 Darmstadt 
www.gsi.de 

Gesellschaft mit beschränkter Haftung 
Sitz der Gesellschaft: Darmstadt 
Handelsregister: Amtsgericht Darmstadt, HRB 1528 

Geschäftsführung: Professor Dr. Dr. h.c. mult. Horst Stöcker, 
Dr.-Ing. Jürgen Henschel 

Vorsitzende des Aufsichtsrates: Dr. Beatrix Vierkorn-Rudolph 
Stellvertreter: Ministerialdirigent Dr. Rolf Bernhardt

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