Re: [Fink-users] Failed: phase compiling: blt-2.4z-162 failed

[Daniel E. Macks]

Alexander Hansen  said:
>
>> On Nov 14, 2016, at 08:31, William G. Scott  wrote:
>> 
>> BTW, BLT still compiles fine on my 10.11.6 machine at work.  I haven’t had a 
>> chance to test on anything with 10.12 and my home internet has been down 
>> since the orange coup.
>> 
>> William G. Scott
>> Director, Program in Biochemistry and Molecular Biology
>> Professor, Department of Chemistry and Biochemistry
>> and The Center for the Molecular Biology of RNA
>> University of California at Santa Cruz
>> Santa Cruz, California 95064
>> USA
>> 
>> http://scottlab.ucsc.edu
>
> I got the same error on 10.12:
>
> gcc -Wall -O3 -fno-common -Wall -fno-strict-aliasing 
> -I/sw/include/tcltk-private/tk8.6/generic 
> -I/sw/include/tcltk-private/tk8.6/unix   -I. -I.  -I/sw/include 
> -I/usr/X11/include  -o bltwish \
>   -DTCLLIBPATH=\"/sw/lib/tcl8.6\" \
>   ./bltUnixMain.c libBLT.a -L/sw/lib -ltk8.6 -ltcl8.6 -lX11 
> -ljpeg -lm   
> ld: library not found for -lX11
>
> Even though I’m fully provisioned with convenience symlinks:
>
> Fionna-4:finkinfo hansen$ ls -l /usr
> total 16
> lrwxr-xr-x 1 root  wheel  8 Nov  1 08:28 X11 -> /opt/X11
> lrwxr-xr-x 1 root  wheel  8 Nov  1 08:28 X11R6 -> /opt/X11
>
> During the configure phase I show:  
>
> checking for X... libraries , headers /usr/X11/include
>
> and config.log has 
>
> configure:2964: gcc -E -I/sw/include conftest.c >/dev/null 2>conftest.out
> In file included from configure:2960:
> /sw/include/X11/Intrinsic.h:53:10: fatal error: 'X11/Xlib.h' file not found
> #include
> ^
> 1 error generated.
>
> It turns out that Fink’s libxt package was the culprit here for me.  By 
> removing that the build was able to proceed.  We’re going to be phasing libXt 
> (non-flat) out since it didn’t behave as we had hoped, but currently either 
> libxt or libxt-flat will trigger this.

It's a bug in autoconf2.13 (!) that has always given rare/sporatic
fails that we could never track down, but now our libxt made the fail
more likely and more reproducible. I just committed a patch to blt to
fix the bug.

dan

--
Daniel Macks
dma...@netspace.org


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Re: [Fink-users] Failed: phase compiling: blt-2.4z-162 failed

[Yu, Ying]

Hi William,


I tried

sudo apt-get update
sudo apt-get install blt


They run successfully and I got the newest version of blt installed. And then I 
run " fink selfupdate" and "fink install kdebase4-mac". However, I got the same 
errors.


My machine is 10.10.5 OS X Yosemite.


Ying


From: William G. Scott 
Sent: Monday, November 14, 2016 11:31:45 AM
To: Alexander Hansen
Cc: Yu, Ying; fink-users@lists.sourceforge.net
Subject: Re: [Fink-users] Failed: phase compiling: blt-2.4z-162 failed

BTW, BLT still compiles fine on my 10.11.6 machine at work.  I haven’t had a 
chance to test on anything with 10.12 and my home internet has been down since 
the orange coup.

William G. Scott
Director, Program in Biochemistry and Molecular Biology
Professor, Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
University of California at Santa Cruz
Santa Cruz, California 95064
USA

http://scottlab.ucsc.edu

> On Nov 14, 2016, at 8:25 AM, Alexander Hansen  
> wrote:
>
>
>> On Nov 14, 2016, at 07:45, Yu, Ying  wrote:
>>
>> Hi Alex,
>>
>> Thanks for the reply. If I type "ls -d /usr" in the terminal, I got "/usr". 
>> Then how to go on from here?
>>
>> Ying
>
> Oops,  I should have just had you use “ls -l /usr”.  I wasn’t fully awake, I 
> guess. ;-)

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Re: [Fink-users] Failed: phase compiling: blt-2.4z-162 failed

[William G. Scott]

BTW, BLT still compiles fine on my 10.11.6 machine at work.  I haven’t had a 
chance to test on anything with 10.12 and my home internet has been down since 
the orange coup.

William G. Scott
Director, Program in Biochemistry and Molecular Biology
Professor, Department of Chemistry and Biochemistry
and The Center for the Molecular Biology of RNA
University of California at Santa Cruz
Santa Cruz, California 95064
USA

http://scottlab.ucsc.edu

> On Nov 14, 2016, at 8:25 AM, Alexander Hansen  
> wrote:
> 
> 
>> On Nov 14, 2016, at 07:45, Yu, Ying  wrote:
>> 
>> Hi Alex,
>> 
>> Thanks for the reply. If I type "ls -d /usr" in the terminal, I got "/usr". 
>> Then how to go on from here?
>> 
>> Ying
> 
> Oops,  I should have just had you use “ls -l /usr”.  I wasn’t fully awake, I 
> guess. ;-)


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Re: [Fink-users] Failed: phase compiling: blt-2.4z-162 failed

[Alexander Hansen]

> On Nov 14, 2016, at 08:31, William G. Scott  wrote:
> 
> BTW, BLT still compiles fine on my 10.11.6 machine at work.  I haven’t had a 
> chance to test on anything with 10.12 and my home internet has been down 
> since the orange coup.
> 
> William G. Scott
> Director, Program in Biochemistry and Molecular Biology
> Professor, Department of Chemistry and Biochemistry
> and The Center for the Molecular Biology of RNA
> University of California at Santa Cruz
> Santa Cruz, California 95064
> USA
> 
> http://scottlab.ucsc.edu

I got the same error on 10.12:

gcc -Wall -O3 -fno-common -Wall -fno-strict-aliasing 
-I/sw/include/tcltk-private/tk8.6/generic 
-I/sw/include/tcltk-private/tk8.6/unix   -I. -I.  -I/sw/include 
-I/usr/X11/include  -o bltwish \
-DTCLLIBPATH=\"/sw/lib/tcl8.6\" \
./bltUnixMain.c libBLT.a -L/sw/lib -ltk8.6 -ltcl8.6 -lX11 
-ljpeg -lm   
ld: library not found for -lX11

Even though I’m fully provisioned with convenience symlinks:

Fionna-4:finkinfo hansen$ ls -l /usr
total 16
lrwxr-xr-x 1 root  wheel  8 Nov  1 08:28 X11 -> /opt/X11
lrwxr-xr-x 1 root  wheel  8 Nov  1 08:28 X11R6 -> /opt/X11

During the configure phase I show:  

checking for X... libraries , headers /usr/X11/include

and config.log has 

configure:2964: gcc -E -I/sw/include conftest.c >/dev/null 2>conftest.out
In file included from configure:2960:
/sw/include/X11/Intrinsic.h:53:10: fatal error: 'X11/Xlib.h' file not found
#include
^
1 error generated.

It turns out that Fink’s libxt package was the culprit here for me.  By 
removing that the build was able to proceed.  We’re going to be phasing libXt 
(non-flat) out since it didn’t behave as we had hoped, but currently either 
libxt or libxt-flat will trigger this.


-- 
Alexander Hansen, Ph.D.
Fink User Liaison


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[Fink-users] Repeated failures with update-all

[Daren Gillespie]

enable.c:131:12: warning: incompatible pointer types passing 'FILE *' (aka
'struct __sFILE *') to parameter of type 'const char *'
[-Wincompatible-pointer-types]

parse.c:68:14: warning: passing 'const xmlChar *' (aka 'const unsigned char
*') to parameter of type 'const char *' converts between pointers to
integer types with different sign

  [-Wpointer-sign]

printf(stderr, "Can't create symlink in %s-enabled.\n", DESCDIR);

   ^~

  if (strcmp(name, "description") == 0) {

 ^~~~

/usr/include/stdio.h:218:16: note: expanded from macro 'stderr'

#define stderr  __stderrp

/usr/include/string.h:^77

:25: note: passing argument to/usr/include/stdio.h :parameter259 :'__s1'36
:here

note: passing argument to parameter here

int  strcmp(const char *__s1, const char *__s2);

^

int  printf(const char * __restrict, ...) __printflike(1, 2);

   ^

parse.c:70:21: warning: passing 'const xmlChar *' (aka 'const unsigned char
*') to parameter of type 'const char *' converts between pointers to
integer types with different sign

  [-Wpointer-sign]

  } else if (strcmp(name, "message") == 0) {

^~~~

/usr/include/string.h:77:25: note: passing argument to parameter '__s1' here

int  strcmp(const char *__s1, const char *__s2);

^

parse.c:72:21: warning: passing 'const xmlChar *' (aka 'const unsigned char
*') to parameter of type 'const char *' converts between pointers to
integer types with different sign

  [-Wpointer-sign]

  } else if (strcmp(name, "startmessage") == 0) {

^~~~

/usr/include/string.h:77:25: note: passing argument to parameter '__s1' here

int  strcmp(const char *__s1, const char *__s2);

^

parse.c:74:21: warning: passing 'const xmlChar *' (aka 'const unsigned char
*') to parameter of type 'const char *' converts between pointers to
integer types with different sign

  [-Wpointer-sign]

  } else if (strcmp(name, "stopmessage") == 0) {

^~~~

/usr/include/string.h:77:25: note: passing argument to parameter '__s1' here

int  strcmp(const char *__s1, const char *__s2);

^

parse.c:76:21: warning: passing 'const xmlChar *' (aka 'const unsigned char
*') to parameter of type 'const char *' converts between pointers to
integer types with different sign

  [-Wpointer-sign]

  } else if (strcmp(name, "restartmessage") == 0) {

^~~~

/usr/include/string.h:77:25: note: passing argument to parameter '__s1' here

int  strcmp(const char *__s1, const char *__s2);

^

parse.c:79:21: warning: passing 'const xmlChar *' (aka 'const unsigned char
*') to parameter of type 'const char *' converts between pointers to
integer types with different sign

  [-Wpointer-sign]

  } else if (strcmp(name, "daemon") == 0) {

^~~~

/usr/include/string.h:77:25: note: passing argument to parameter '__s1' here

int  strcmp(const char *__s1, const char *__s2);

^

parse.c:96:13: warning: passing 'const xmlChar *' (aka 'const unsigned char
*') to parameter of type 'const char *' converts between pointers to
integer types with different sign

  [-Wpointer-sign]

if (strcmp(atts[i], "name") == 0) {

   ^~~

/usr/include/string.h:77:25: note: passing argument to parameter '__s1' here

int  strcmp(const char *__s1, const char *__s2);

^

parse.c:97:30: warning: passing 'const xmlChar *' (aka 'const unsigned char
*') to parameter of type 'const char *' converts between pointers to
integer types with different sign

  [-Wpointer-sign]

  cur_daemon->name = strdup(atts[i+1]);

^

/usr/include/string.h:117:26: note: passing argument to parameter '__s1'
here

char*strdup(const char *__s1);

^

parse.c:102:43: warning: passing 'const xmlChar *' (aka 'const unsigned
char *') to parameter of type 'const char *' converts between pointers to
integer types with different sign

  [-Wpointer-sign]

  } else if (cur_daemon != NULL && strcmp(name, "executable") == 0) {

  ^~~~

/usr/include/string.h:77:25: note: passing argument to parameter '__s1' here

int  strcmp(const char *__s1, const char *__s2);

^

parse.c:107:13: warning: passing 'const xmlChar *' (aka 'const unsigned
char *') to parameter of type 'const char *' converts between pointers to
integer types with different sign

  [-Wpointer-sign]

if (strcmp(atts[i], "background") == 0 &&
is_boolean_true(atts[i+1])) {

   ^~~

/usr/include/string.h:77:25: note: passing argument to parameter '__s1' here

int  strcmp(const char *__s1, const 

Re: [Fink-users] Failed: phase compiling: blt-2.4z-162 failed

[Alexander Hansen]

> On Nov 14, 2016, at 07:45, Yu, Ying  wrote:
> 
> Hi Alex,
> 
> Thanks for the reply. If I type "ls -d /usr" in the terminal, I got "/usr". 
> Then how to go on from here?
> 
> Ying

Oops,  I should have just had you use “ls -l /usr”.  I wasn’t fully awake, I 
guess. ;-)--
Developer Access Program for Intel Xeon Phi Processors
Access to Intel Xeon Phi processor-based developer platforms.
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Re: [Fink-users] Failed: phase compiling: blt-2.4z-162 failed

[Yu, Ying]

Hi Alex,


Thanks for the reply. If I type "ls -d /usr" in the terminal, I got "/usr". 
Then how to go on from here?


Ying


From: Alexander Hansen 
Sent: Monday, November 14, 2016 10:34:30 AM
To: Yu, Ying
Cc: fink-users@lists.sourceforge.net; wgsc...@users.sourceforge.net
Subject: Re: [Fink-users] Failed: phase compiling: blt-2.4z-162 failed


> On Nov 14, 2016, at 06:35, Yu, Ying  wrote:
>
> Hi all,
>
> I run into the errors, "clang: error: linker command failed with exit code 1 
> " and "Failed: phase compiling: blt-2.4z-162 failed",  when I run "fink 
> install kdebase4-mac". I think I have the appropriate Xcode and command line 
> tool version. I don't know how to fix this problem and get KDE installed. Can 
> anybody help me? A detailed report can be seen below.
>
> Thanks,
>
> Ying
>
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
>  file: libBLT.a(bltVecCmd.o) has no symbols
> ranlib libBLT.a
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
>  file: libBLT.a(bltVecCmd.o) has no symbols
> rm -f bltwish
> gcc -Wall -O3 -fno-common -Wall -fno-strict-aliasing 
> -I/sw/include/tcltk-private/tk8.6/generic 
> -I/sw/include/tcltk-private/tk8.6/unix   -I. -I.  -I/sw/include 
> -I/usr/X11/include  -o bltwish \
> -DTCLLIBPATH=\"/sw/lib/tcl8.6\" \
> ./bltUnixMain.c libBLT.a -L/sw/lib -ltk8.6 -ltcl8.6 -lX11 -ljpeg -lm
> ld: library not found for -lX11
> clang: error: linker command failed with exit code 1 (use -v to see 
> invocation)
> make[1]: *** [bltwish] Error 1
> make: *** [all] Error 2
> ### execution of /tmp/fink.bDGCX failed, exit code 2
> ### execution of /tmp/fink.69mJ_ failed, exit code 2
> Removing runtime build-lock...
> Removing build-lock package...
> /sw/bin/dpkg-lockwait -r fink-buildlock-blt-2.4z-162
> (Reading database ... 171043 files and directories currently installed.)
> Removing fink-buildlock-blt-2.4z-162 ...
> Failed: phase compiling: blt-2.4z-162 failed
>
> Before reporting any errors, please run "fink selfupdate" and try again.
>
> If you continue to have issues, please check to see if the FAQ on Fink's
> website solves the problem.  If not, ask on one (not both, please) of
> these mailing lists:
>
> The Fink Users List 
> The Fink Beginners List ,
>
> with a carbon copy to the maintainer:
>
> William Scott 
>
> Note that this is preferable to emailing just the maintainer directly,
> since most fink package maintainers do not have access to all possible
> hardware and software configurations.
>
> Please try to include the complete error message in your report.  This
> generally consists of a compiler line starting with e.g. "gcc" or "g++"
> followed by the actual error output from the compiler.
>
> Also include the following system information:
> Package manager version: 0.41.0
> Distribution version: selfupdate-rsync Fri Nov 11 12:00:29 2016, 10.10, x86_64
> Trees: local/main stable/main
> Xcode.app: 6.4
> Xcode command-line tools: 7.2.0.0.1.1447826929
> blt-2.4z-162 is set to build with only one job.
>
> —

Actually, the error is "ld: library not found for -lX11”.  The other items are 
symptoms of that.

What do you get from “ls -d /usr” ?  We’re trying to have our packages not 
assume the existence of the /usr/X11 and /usr/X11R6 convenience symlinks, but 
blt might not have been updated to do that yet.

--
Alexander Hansen, Ph.D.
Fink User Liaison

--
Developer Access Program for Intel Xeon Phi Processors
Access to Intel Xeon Phi processor-based developer platforms.
With one year of Intel Parallel Studio XE.
Training and support from Colfax.
Order your platform today. http://sdm.link/xeonphi___
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Re: [Fink-users] Failed: phase compiling: blt-2.4z-162 failed

[Alexander Hansen]

> On Nov 14, 2016, at 06:35, Yu, Ying  wrote:
> 
> Hi all,
> 
> I run into the errors, "clang: error: linker command failed with exit code 1 
> " and "Failed: phase compiling: blt-2.4z-162 failed",  when I run "fink 
> install kdebase4-mac". I think I have the appropriate Xcode and command line 
> tool version. I don't know how to fix this problem and get KDE installed. Can 
> anybody help me? A detailed report can be seen below.
> 
> Thanks,
> 
> Ying
> 
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
>  file: libBLT.a(bltVecCmd.o) has no symbols
> ranlib libBLT.a
> /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
>  file: libBLT.a(bltVecCmd.o) has no symbols
> rm -f bltwish
> gcc -Wall -O3 -fno-common -Wall -fno-strict-aliasing 
> -I/sw/include/tcltk-private/tk8.6/generic 
> -I/sw/include/tcltk-private/tk8.6/unix   -I. -I.  -I/sw/include 
> -I/usr/X11/include  -o bltwish \
> -DTCLLIBPATH=\"/sw/lib/tcl8.6\" \
> ./bltUnixMain.c libBLT.a -L/sw/lib -ltk8.6 -ltcl8.6 -lX11 -ljpeg -lm   
> ld: library not found for -lX11
> clang: error: linker command failed with exit code 1 (use -v to see 
> invocation)
> make[1]: *** [bltwish] Error 1
> make: *** [all] Error 2
> ### execution of /tmp/fink.bDGCX failed, exit code 2
> ### execution of /tmp/fink.69mJ_ failed, exit code 2
> Removing runtime build-lock...
> Removing build-lock package...
> /sw/bin/dpkg-lockwait -r fink-buildlock-blt-2.4z-162
> (Reading database ... 171043 files and directories currently installed.)
> Removing fink-buildlock-blt-2.4z-162 ...
> Failed: phase compiling: blt-2.4z-162 failed
> 
> Before reporting any errors, please run "fink selfupdate" and try again.
> 
> If you continue to have issues, please check to see if the FAQ on Fink's 
> website solves the problem.  If not, ask on one (not both, please) of
> these mailing lists:
> 
> The Fink Users List 
> The Fink Beginners List ,
> 
> with a carbon copy to the maintainer:
> 
> William Scott 
> 
> Note that this is preferable to emailing just the maintainer directly,
> since most fink package maintainers do not have access to all possible
> hardware and software configurations.
> 
> Please try to include the complete error message in your report.  This
> generally consists of a compiler line starting with e.g. "gcc" or "g++"
> followed by the actual error output from the compiler.
> 
> Also include the following system information:
> Package manager version: 0.41.0
> Distribution version: selfupdate-rsync Fri Nov 11 12:00:29 2016, 10.10, x86_64
> Trees: local/main stable/main
> Xcode.app: 6.4
> Xcode command-line tools: 7.2.0.0.1.1447826929
> blt-2.4z-162 is set to build with only one job.
> 
> —

Actually, the error is "ld: library not found for -lX11”.  The other items are 
symptoms of that.

What do you get from “ls -d /usr” ?  We’re trying to have our packages not 
assume the existence of the /usr/X11 and /usr/X11R6 convenience symlinks, but 
blt might not have been updated to do that yet.

-- 
Alexander Hansen, Ph.D.
Fink User Liaison


--
Developer Access Program for Intel Xeon Phi Processors
Access to Intel Xeon Phi processor-based developer platforms.
With one year of Intel Parallel Studio XE.
Training and support from Colfax.
Order your platform today. http://sdm.link/xeonphi
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[Fink-users] Failed: phase compiling: blt-2.4z-162 failed

[Yu, Ying]

Hi all,


I run into the errors, "clang: error: linker command failed with exit code 1 " 
and "Failed: phase compiling: blt-2.4z-162 failed",  when I run "fink install 
kdebase4-mac". I think I have the appropriate Xcode and command line tool 
version. I don't know how to fix this problem and get KDE installed. Can 
anybody help me? A detailed report can be seen below.


Thanks,


Ying


/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: libBLT.a(bltVecCmd.o) has no symbols

ranlib libBLT.a

/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib:
 file: libBLT.a(bltVecCmd.o) has no symbols

rm -f bltwish

gcc -Wall -O3 -fno-common -Wall -fno-strict-aliasing 
-I/sw/include/tcltk-private/tk8.6/generic 
-I/sw/include/tcltk-private/tk8.6/unix   -I. -I.  -I/sw/include 
-I/usr/X11/include  -o bltwish \

-DTCLLIBPATH=\"/sw/lib/tcl8.6\" \

./bltUnixMain.c libBLT.a -L/sw/lib -ltk8.6 -ltcl8.6 -lX11 -ljpeg -lm

ld: library not found for -lX11

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make[1]: *** [bltwish] Error 1

make: *** [all] Error 2

### execution of /tmp/fink.bDGCX failed, exit code 2

### execution of /tmp/fink.69mJ_ failed, exit code 2

Removing runtime build-lock...

Removing build-lock package...

/sw/bin/dpkg-lockwait -r fink-buildlock-blt-2.4z-162

(Reading database ... 171043 files and directories currently installed.)

Removing fink-buildlock-blt-2.4z-162 ...

Failed: phase compiling: blt-2.4z-162 failed


Before reporting any errors, please run "fink selfupdate" and try again.


If you continue to have issues, please check to see if the FAQ on Fink's

website solves the problem.  If not, ask on one (not both, please) of

these mailing lists:


The Fink Users List 

The Fink Beginners List ,


with a carbon copy to the maintainer:


William Scott 


Note that this is preferable to emailing just the maintainer directly,

since most fink package maintainers do not have access to all possible

hardware and software configurations.


Please try to include the complete error message in your report.  This

generally consists of a compiler line starting with e.g. "gcc" or "g++"

followed by the actual error output from the compiler.


Also include the following system information:

Package manager version: 0.41.0

Distribution version: selfupdate-rsync Fri Nov 11 12:00:29 2016, 10.10, x86_64

Trees: local/main stable/main

Xcode.app: 6.4

Xcode command-line tools: 7.2.0.0.1.1447826929

blt-2.4z-162 is set to build with only one job.

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Re: [Fink-users] fink install xfig failed

[Roman Fleysher]

Yes,  Javier. it is.  i use xfig for a number of years,  probably 15, on Linux. 
Thank you for looking into this, 
Roman

Sent from Yahoo Mail on Android 
 
  On Mon, Nov 14, 2016 at 2:59 AM, Javier ARANTEGUI 
JIMENEZ wrote:   Hi!

Now I'm having problems with xfig and it doesn't work, but that requires 
another email. 

> El 13 nov 2016, a las 18:50, Alexander Hansen  
> escribió:
>> However, xfig behaves strange. When I try to edit an object, I can change 
>> values only by pressing "up" and "down" triangles next to the value to 
>> increment or decrement it. But if I try to edit text field --- no. What I 
>> did, I opened xfig file in a text editor and edited the entry there.

When you are writing in a text field in xfig, the cursor arrow has to be inside 
the text field (if I remember correctly).

Javier  
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