[Freesurfer] MNI align
I think I need to do the MNI align. Could someone teach me how to do this? Thanks, Wan ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
[Freesurfer] Freesurfer MAC OSX Installlation
Title: Freesurfer MAC OSX Installlation I have downloaded and installed freesurfer-20040218-Darwin.tar.gz with no seeming problems. I modified my .tcshrc file, checked directories and think all is in order. I operate in X11 windows. I still can not find csurf or any work-around. Does anyone have any ideas about my problem? -- M. Robert Willcott 1807 Orchard Country Lane Houston, TX 77062 713.302.5148 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Freesurfer MAC OSX Installlation
Hi, Robert: Look at the head portion of csurf. It has the reference to tixwish, which may not agree with what you have. Modify that line to what you have. Tosa [EMAIL PROTECTED] wrote: I have downloaded and installed freesurfer-20040218-Darwin.tar.gz with no seeming problems. I modified my .tcshrc file, checked directories and think all is in order. I operate in X11 windows. I still can not find csurf or any work-around. Does anyone have any ideas about my problem? -- M. Robert Willcott 1807 Orchard Country Lane Houston, TX 77062 713.302.5148 ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Yasunari Tosa, Ph.D. Email: [EMAIL PROTECTED] NMR Ctr, Mass. General HospitalTEL: 617-726-4050 Building 149, 13th Street Charlestown, MA 02129 USA ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Freesurfer MAC OSX Installlation
One problem I have had in the past is that the program csurf was not packaged as an executable. Go to your freesurfer folder then go to bin/noarch. Check that csurf is in fact an executable (ls -l csurf would work fine). If it's not an executable try making it one. HTH. -Xander On Fri, 2005-02-11 at 09:43, [EMAIL PROTECTED] wrote: > I have downloaded and installed freesurfer-20040218-Darwin.tar.gz with > no seeming problems. I modified my .tcshrc file, checked directories > and think all is in order. I operate in X11 windows. I still can not > find csurf or any work-around. Does anyone have any ideas about my > problem? > -- > M. Robert Willcott > 1807 Orchard Country Lane > Houston, TX 77062 > 713.302.5148 > > __ > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Freesurfer MAC OSX Installlation
I have downloaded and installed freesurfer-20040218-Darwin.tar.gz with no seeming problems. I modified my .tcshrc file, checked directories and think all is in order. I operate in X11 windows. I still can not find csurf or any work-around. Does anyone have any ideas about my problem? Can you find other programs, like mri_info? If so, then, as the other person suggested, make sure csurf is executable: $ chmod a+x $FREESURFER_HOME/bin/noarch/csurf If not, then make sure your path is set up. Try: $ printenv PATH and see if $FREESURFER_HOME/bin/Darwin shows up in there. If not, perhaps you aren't sourcing the FreeSurferEnv.csh file. -- Kevin Teich ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
