Thanks so much, I appreciate the help.
However, I am not sure what I am supposed to do with the output of the
recon-all process.
Can I simply use the .dat file that is outputted there in MRI_vol2surf?
Lotte
Date: Wed, 22 Mar 2017 13:01:42 -0400
From: Douglas Greve
Subject: Re: [Freesurfer] display SPM results on inflated surface?
To: freesurfer@nmr.mgh.harvard.edu
Message-ID: <41134c50-bb0b-792c-c52b-b6850bcec...@nmr.mgh.harvard.edu>
Content-Type: text/plain; charset="windows-1252"
If you have the T1 for the mni152 (which is somewhere in the bowels of the spm
distribution), then you just run recon-all on it. I've done this for myself, so
you can just download the result (which I have not checked thoroughly) from
here https://gate.nmr.mgh.harvard.edu/safelinks/greve/mni152.tar.gz
On 3/21/17 1:27 PM, Schoot, Lotte wrote:
> Hi Doug and others,
>
> A while ago, I got this reply to my question below (thanks!). I tried to look
> in to it, but I am a bit confused (probably because I am very new to
> Freesurfer).
> My results are on the MNI 152, but I don't understand what you mean with 'run
> the mni152 through freesurfer'. Is this the process to get the register.dat
> file that is required in mri_vol2surf?
> What would you recommend to get the register.dat file? Is it possible to use
> bbregister for that? I have tried this, but I don't know whether it is
> correct:
>
> bbregister --s fsaverage --mov con_0001.nii --init-spm --reg
> register.dat --bold
>
>
> Thanks!
> Lotte
>
>
> >If your results are on the MNI152, you can run the mni152 through
> >freesurfer, then use mri_vol2surf to map the data to the surface then
> >view it with freeview (or tksurfer). You should not confuse this with
> >doing the fMRI analysis on the surface. You will not have the
> >benefits of surface-based analysis
>
>
> On 02/15/2017 03:37 PM, Schoot, Lotte wrote:
> >/Hi all, />//>/I was wondering if you knew of a way to display SPM
> >results onto the />/inflated surface in Freesurfer. />//>/I have
> >tried using SurfRend but there seem to be problems which might />/be
> >due to the fact the results are obtained with SPM12 and SurfRend
> >/>/was designed to work with SPM5. />//>/Thanks, />/Lotte
> >/>//>//>/___
> >/>/Freesurfer mailing list />/Freesurfer at nmr.mgh.harvard.edu
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> />/https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer /
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> greve at nmr.mgh.harvard.edu
> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
>
> ___
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