Re: [Freesurfer] license file not working

[Hoopes, Andrew]

Hi Philipp,

Okay interesting. So it's failing on centos 8. Do you mind sending the license 
file directly to my email (off-list)?

thanks
Andrew


From: freesurfer-boun...@nmr.mgh.harvard.edu 
 on behalf of Saemann, Philipp 

Sent: Monday, March 15, 2021 3:41 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] license file not working

External Email - Use Caution

Hi Andrew,


it works on the "frontend" of  our cluster:


NAME="Scientific Linux"
VERSION="7.9 (Nitrogen)"
ID="scientific"
ID_LIKE="rhel centos fedora"
VERSION_ID="7.9"
PRETTY_NAME="Scientific Linux 7.9 (Nitrogen)"
ANSI_COLOR="0;31"
CPE_NAME="cpe:/o:scientificlinux:scientificlinux:7.9:GA"
HOME_URL="http://www.scientificlinux.org//";
BUG_REPORT_URL="mailto:scientific-linux-de...@listserv.fnal.gov";
REDHAT_BUGZILLA_PRODUCT="Scientific Linux 7"
REDHAT_BUGZILLA_PRODUCT_VERSION=7.9
REDHAT_SUPPORT_PRODUCT="Scientific Linux"
REDHAT_SUPPORT_PRODUCT_VERSION="7.9"



But not any more on the nodes:

NAME="CentOS Linux"

VERSION="8"
ID="centos"
ID_LIKE="rhel fedora"
VERSION_ID="8"
PLATFORM_ID="platform:el8"
PRETTY_NAME="CentOS Linux 8"
ANSI_COLOR="0;31"
CPE_NAME="cpe:/o:centos:centos:8"
HOME_URL="https://centos.org/";
BUG_REPORT_URL="https://bugs.centos.org/";
CENTOS_MANTISBT_PROJECT="CentOS-8"
CENTOS_MANTISBT_PROJECT_VERSION="8"



Thanks in advance,

best,

Philipp




Von: freesurfer-boun...@nmr.mgh.harvard.edu 
 im Auftrag von Hoopes, Andrew 

Gesendet: Montag, 15. März 2021 20:29
An: Freesurfer support list
Betreff: Re: [Freesurfer] license file not working


Hi Philipp,



Can you let us know the OS and version you’re running on? The license format 
was updated for v6. It should be backwards compatible, but it’s possible it’s 
not anymore on newer systems.



thanks

Andrew



From: freesurfer-boun...@nmr.mgh.harvard.edu 
 on behalf of Saemann, Philipp 

Date: Monday, March 15, 2021 at 2:36 PM
To: freesurfer@nmr.mgh.harvard.edu 
Subject: [Freesurfer] license file not working

External Email - Use Caution

Hi FreeSurfer specalists,



for some historical reconstruction I had to download an old FS5.3-Version,

on a Linux System, untarred etc. - it seems there was no .license = hidden 
license

file coming with the download, and no license.txt file.



I requested one (usual link) and received a license.txt file, and put that

into the FS home folder. When using the command mri_convert I get the

error message that an invalid License file is used.

Questions:



(1) Is a .license file (so, a hidden file) needed for itself or in addition?

(2) Why does a freshly delivered license.txt file not work?

(3) Any other solutions or ideas?



Bw,

Philipp

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Re: [Freesurfer] license file not working

[Saemann, Philipp]

External Email - Use Caution

Hi Andrew,


it works on the "frontend" of  our cluster:


NAME="Scientific Linux"
VERSION="7.9 (Nitrogen)"
ID="scientific"
ID_LIKE="rhel centos fedora"
VERSION_ID="7.9"
PRETTY_NAME="Scientific Linux 7.9 (Nitrogen)"
ANSI_COLOR="0;31"
CPE_NAME="cpe:/o:scientificlinux:scientificlinux:7.9:GA"
HOME_URL="http://secure-web.cisco.com/1klnZRW4M4WW9ZVKaWotlbPIVMzmb4T29Qe_78f_eVmTDoUgcEiBiiw5Tlc63lzUMN--Y21kFEP_CCOGZhFevGautv0mNoXcqYUdmw3SsWi-iG94jmMauGXSIQGPNdxEmgsVTYPprF-6etRYZMIoyu4rYCK3FLWA4GhEUQmNBBN-0KsNddnKocuKicc7ztuKAIYGAmtAoJZGTnfDahGeSvq-KCO5jqKx9FB8U2W_v3jXsVuHbrLhAnRo42wMsXIMVFA0tUBOpYs919bxPfACPtQ/http%3A%2F%2Fwww.scientificlinux.org%2F%2F";
BUG_REPORT_URL="mailto:scientific-linux-de...@listserv.fnal.gov";
REDHAT_BUGZILLA_PRODUCT="Scientific Linux 7"
REDHAT_BUGZILLA_PRODUCT_VERSION=7.9
REDHAT_SUPPORT_PRODUCT="Scientific Linux"
REDHAT_SUPPORT_PRODUCT_VERSION="7.9"



But not any more on the nodes:

NAME="CentOS Linux"

VERSION="8"
ID="centos"
ID_LIKE="rhel fedora"
VERSION_ID="8"
PLATFORM_ID="platform:el8"
PRETTY_NAME="CentOS Linux 8"
ANSI_COLOR="0;31"
CPE_NAME="cpe:/o:centos:centos:8"
HOME_URL="https://secure-web.cisco.com/155QFGor0BvTWlPUXIVYeBXT-03HZvvbL_y_LFA__5voZlqIklvV3A9iWM50dUr0CmmbnHh3aOye4TpK7jd3sjvBQO7C8SDg5EnqUHFugRNSwIICKvk5EPRFPrTuTxxXBIbG-dpy3h71VyDY3nLMJrdBQ57Lsb_FualDCAbM1J-w2_EfxHFLPPap6E3qDsFmwmprCUus6fZ9h6Wn5xHrRWK2F0oge7qjB9vnZuKx3JpCBSdVoyfWNwfcXVU5HdwsLB0T96aElwgy2MDb06sul3w/https%3A%2F%2Fcentos.org%2F";
BUG_REPORT_URL="https://secure-web.cisco.com/1-z9ny04ggwstoxf8wX8eOhQDvv5yOR_STzc_48_IynJfMZzrYIuUG60St8GdD3yjJCNTGWoYzmJ0DgbM21EDQe_ag0huuDf9MHiQqeQyuXKxI7ggayfubotvDh12nkF1GfeOwxEqKO0RblPhtT7xxRBq7BoAOAZ_gZ7g63-R3m2AeIIt3Dk-ZZGkVt_pZauvPldw2QSqZdtmdu5Js43pZumaajfNbrgXf4ufZ6WfLxZUS7f0vP4cD-eTrXo6jw80aDJDm1R24eDQyGdbicBKjA/https%3A%2F%2Fbugs.centos.org%2F";
CENTOS_MANTISBT_PROJECT="CentOS-8"
CENTOS_MANTISBT_PROJECT_VERSION="8"



Thanks in advance,

best,

Philipp




Von: freesurfer-boun...@nmr.mgh.harvard.edu 
 im Auftrag von Hoopes, Andrew 

Gesendet: Montag, 15. März 2021 20:29
An: Freesurfer support list
Betreff: Re: [Freesurfer] license file not working


Hi Philipp,



Can you let us know the OS and version you’re running on? The license format 
was updated for v6. It should be backwards compatible, but it’s possible it’s 
not anymore on newer systems.



thanks

Andrew



From: freesurfer-boun...@nmr.mgh.harvard.edu 
 on behalf of Saemann, Philipp 

Date: Monday, March 15, 2021 at 2:36 PM
To: freesurfer@nmr.mgh.harvard.edu 
Subject: [Freesurfer] license file not working

External Email - Use Caution

Hi FreeSurfer specalists,



for some historical reconstruction I had to download an old FS5.3-Version,

on a Linux System, untarred etc. - it seems there was no .license = hidden 
license

file coming with the download, and no license.txt file.



I requested one (usual link) and received a license.txt file, and put that

into the FS home folder. When using the command mri_convert I get the

error message that an invalid License file is used.

Questions:



(1) Is a .license file (so, a hidden file) needed for itself or in addition?

(2) Why does a freshly delivered license.txt file not work?

(3) Any other solutions or ideas?



Bw,

Philipp
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Re: [Freesurfer] license file not working

[Hoopes, Andrew]

Hi Philipp,

Can you let us know the OS and version you’re running on? The license format 
was updated for v6. It should be backwards compatible, but it’s possible it’s 
not anymore on newer systems.

thanks
Andrew

From: freesurfer-boun...@nmr.mgh.harvard.edu 
 on behalf of Saemann, Philipp 

Date: Monday, March 15, 2021 at 2:36 PM
To: freesurfer@nmr.mgh.harvard.edu 
Subject: [Freesurfer] license file not working

External Email - Use Caution

Hi FreeSurfer specalists,



for some historical reconstruction I had to download an old FS5.3-Version,

on a Linux System, untarred etc. - it seems there was no .license = hidden 
license

file coming with the download, and no license.txt file.



I requested one (usual link) and received a license.txt file, and put that

into the FS home folder. When using the command mri_convert I get the

error message that an invalid License file is used.

Questions:



(1) Is a .license file (so, a hidden file) needed for itself or in addition?

(2) Why does a freshly delivered license.txt file not work?

(3) Any other solutions or ideas?



Bw,

Philipp
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[Freesurfer] license file not working

[Saemann, Philipp]

External Email - Use Caution

Hi FreeSurfer specalists,


for some historical reconstruction I had to download an old FS5.3-Version,

on a Linux System, untarred etc. - it seems there was no .license = hidden 
license

file coming with the download, and no license.txt file.



I requested one (usual link) and received a license.txt file, and put that

into the FS home folder. When using the command mri_convert I get the

error message that an invalid License file is used.

Questions:


(1) Is a .license file (so, a hidden file) needed for itself or in addition?

(2) Why does a freshly delivered license.txt file not work?

(3) Any other solutions or ideas?



Bw,

Philipp
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Re: [Freesurfer] Freesurfer license file error

[Hoopes, Andrew]

Hi Mason,

My guess is that freesurfer is still grabbing the initial license. Have you 
been sure to remove the original one? It might be hiding as a .license file

Best
Andrew

From:  on behalf of Mason Wells 

Reply-To: FS Help 
Date: Wednesday, June 17, 2020 at 5:34 AM
To: "freesurfer-boun...@nmr.mgh.harvard.edu" 
, FS Help 

Subject: [Freesurfer] Freesurfer license file error


External Email - Use Caution
Hi Expets,

I am trying to work with the Ciftify package, a great tool for converting 
non-HCP data into cifti format. I am running the following docker command. 
However, I get an error with the return code 255

sudo docker run --entrypoint ciftify_recon_all -ti --rm -v 
/home/masontwells/Documents/Data/freesurfer/subjects:/data:ro -v 
/home/masontwells/Documents/Ciftify/HCP/outputs:/out 
tigrlab/fmriprep_ciftify:1.1.8-2.1.1  --surf-reg FS --fs-subjects-dir /data 
--ciftify-work-dir /out PPT_1x

cmd: mri_convert /data/PPT_1x/mri/T1.mgz /out/PPT_1x/T1w/T1w.nii.gz
 Failed with returncode 255

At the bottom of the ciftify recon-all log it says the below. However, I 
downloaded the license as advised, placed it in the correct directory 
(usr/local/freesurfer). I have also added the path to the license to my bashrc. 
Have you seen this type of error before?

GNU libc version: 2.23
ERROR: Systems running GNU glibc version greater than 2.15
  require a newly formatted license file (it's free). Please
  download a new one from the following page:
  http://surfer.nmr.mgh.harvard.edu/registration.html
--

Cheers,
Mason

Mason T Wells, MSc
PhD student
School of Optometry and Vision Sciences
& Cardiff University Brain Research
Imaging Centre (CUBRIC), School of Psychology
Cardiff University
Cardiff
CF24 4HQ
UK

Email: wells...@cardiff.ac.uk<mailto:wells...@cardiff.ac.uk>
Tel: 02920 879628
Web: Cardiff University 
webpage<https://www.cardiff.ac.uk/people/research-students/view/974214->
Mason T Wells, MSc
Myfyriwr PhD
Yr Ysgol Optometreg a Gwyddorau’r Golwg
& Canolfan Ymchwil Delweddu’r Ymennydd Prifysgol Caerdydd (CUBRIC), Yr Ysgol 
Seicoleg
Prifysgol Caerdydd
Heol Maindy
Caerdydd
CF24 4HQ
DU

E-bost: wells...@caerdydd.ac.uk<mailto:wells...@caerdydd.ac.uk>
Ffôn: 02920 879628

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[Freesurfer] Freesurfer license file error

[Mason Wells]

External Email - Use Caution

Hi Expets,

I am trying to work with the Ciftify package, a great tool for converting 
non-HCP data into cifti format. I am running the following docker command. 
However, I get an error with the return code 255

sudo docker run --entrypoint ciftify_recon_all -ti --rm -v 
/home/masontwells/Documents/Data/freesurfer/subjects:/data:ro -v 
/home/masontwells/Documents/Ciftify/HCP/outputs:/out 
tigrlab/fmriprep_ciftify:1.1.8-2.1.1  --surf-reg FS --fs-subjects-dir /data 
--ciftify-work-dir /out PPT_1x

cmd: mri_convert /data/PPT_1x/mri/T1.mgz /out/PPT_1x/T1w/T1w.nii.gz
 Failed with returncode 255

At the bottom of the ciftify recon-all log it says the below. However, I 
downloaded the license as advised, placed it in the correct directory 
(usr/local/freesurfer). I have also added the path to the license to my bashrc. 
Have you seen this type of error before?

GNU libc version: 2.23
ERROR: Systems running GNU glibc version greater than 2.15
  require a newly formatted license file (it's free). Please
  download a new one from the following page:
  http://surfer.nmr.mgh.harvard.edu/registration.html
--

Cheers,
Mason

Mason T Wells, MSc
PhD student
School of Optometry and Vision Sciences
& Cardiff University Brain Research
Imaging Centre (CUBRIC), School of Psychology
Cardiff University
Cardiff
CF24 4HQ
UK

Email: wells...@cardiff.ac.uk
Tel: 02920 879628
Web: Cardiff University 
webpage
Mason T Wells, MSc
Myfyriwr PhD
Yr Ysgol Optometreg a Gwyddorau’r Golwg
& Canolfan Ymchwil Delweddu’r Ymennydd Prifysgol Caerdydd (CUBRIC), Yr Ysgol 
Seicoleg
Prifysgol Caerdydd
Heol Maindy
Caerdydd
CF24 4HQ
DU

E-bost: wells...@caerdydd.ac.uk
Ffôn: 02920 879628

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Re: [Freesurfer] A note about the Freesurfer license file

[Angstadt, Mike]

Andrew,

Thank you for suggesting that. Turns out that's exactly what seems to have been 
the problem. Renamed the .license file and now things seem to be working. Not 
sure why there was even a .license file there, as I've been using license.txt 
as directed in the installation instructions and email with the license code, 
but oh well.

-Mike

From: freesurfer-boun...@nmr.mgh.harvard.edu 
 on behalf of Hoopes, Andrew 

Sent: Thursday, December 14, 2017 12:19:10 PM
To: Freesurfer support list
Subject: Re: [Freesurfer] A note about the Freesurfer license file

Hi Mike,

Is it possible that freesurfer is reading the wrong license file? What are you 
naming the new license as? FS could be reading a hidden “.license” file in 
FREESURFER_HOME instead.

best,
Andrew

> On Dec 7, 2017, at 4:35 PM, Angstadt, Mike  wrote:
>
> I am getting this same glibc message with Freesurfer 6. Unfortunately I have 
> tried twice now to re-register and updated the license file to the new file 
> that gets emailed to me, but I am still getting the same error. Any ideas 
> what else I can try to troubleshoot this issue?
>
> -Mike
> 
> From: freesurfer-boun...@nmr.mgh.harvard.edu 
>  on behalf of Z K 
> 
> Sent: Friday, February 3, 2017 1:23:04 PM
> To: Freesurfer support list
> Subject: [Freesurfer] A note about the Freesurfer license file
>
> Hello All,
>
> Users on newer linux distributions who upgrade from Freesurfer version
> 5.3 to version 6.0 may get the following error message:
>
> --
> GNU libc version: 2.17
> ERROR: Systems running GNU glibc version greater than 2.15
>   require a newly formatted license file (it's free). Please
>   download a new one from the following page:
>   http://surfer.nmr.mgh.harvard.edu/registration.html
> --
>
> This is a known issue, and as the message says, it is resolved by
> downloading a newly formatted license file from our registration page:
>
>   http://surfer.nmr.mgh.harvard.edu/registration.html
>
> Simply overwrite the old license file with the newly formatted one.
> Sorry for any inconvenience this may have caused.
>
> -The Freesurfer team
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the e-mail
> contains patient information, please contact the Partners Compliance HelpLine 
> at
> http://www.partners.org/complianceline . If the e-mail was sent to you in 
> error
> but does not contain patient information, please contact the sender and 
> properly
> dispose of the e-mail.
>
> **
> Electronic Mail is not secure, may not be read every day, and should not be 
> used for urgent or sensitive issues
>
>
> ___
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> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


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Re: [Freesurfer] A note about the Freesurfer license file

[Hoopes, Andrew]

Hi Mike,

Is it possible that freesurfer is reading the wrong license file? What are you 
naming the new license as? FS could be reading a hidden “.license” file in 
FREESURFER_HOME instead.

best,
Andrew 

> On Dec 7, 2017, at 4:35 PM, Angstadt, Mike  wrote:
> 
> I am getting this same glibc message with Freesurfer 6. Unfortunately I have 
> tried twice now to re-register and updated the license file to the new file 
> that gets emailed to me, but I am still getting the same error. Any ideas 
> what else I can try to troubleshoot this issue?
> 
> -Mike
> 
> From: freesurfer-boun...@nmr.mgh.harvard.edu 
>  on behalf of Z K 
> 
> Sent: Friday, February 3, 2017 1:23:04 PM
> To: Freesurfer support list
> Subject: [Freesurfer] A note about the Freesurfer license file
> 
> Hello All,
> 
> Users on newer linux distributions who upgrade from Freesurfer version
> 5.3 to version 6.0 may get the following error message:
> 
> --
> GNU libc version: 2.17
> ERROR: Systems running GNU glibc version greater than 2.15
>   require a newly formatted license file (it's free). Please
>   download a new one from the following page:
>   http://surfer.nmr.mgh.harvard.edu/registration.html
> --
> 
> This is a known issue, and as the message says, it is resolved by
> downloading a newly formatted license file from our registration page:
> 
>   http://surfer.nmr.mgh.harvard.edu/registration.html
> 
> Simply overwrite the old license file with the newly formatted one.
> Sorry for any inconvenience this may have caused.
> 
> -The Freesurfer team
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> 
> 
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the e-mail
> contains patient information, please contact the Partners Compliance HelpLine 
> at
> http://www.partners.org/complianceline . If the e-mail was sent to you in 
> error
> but does not contain patient information, please contact the sender and 
> properly
> dispose of the e-mail.
> 
> **
> Electronic Mail is not secure, may not be read every day, and should not be 
> used for urgent or sensitive issues 
> 
> 
> ___
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Re: [Freesurfer] A note about the Freesurfer license file

[Angstadt, Mike]

I am getting this same glibc message with Freesurfer 6. Unfortunately I have 
tried twice now to re-register and updated the license file to the new file 
that gets emailed to me, but I am still getting the same error. Any ideas what 
else I can try to troubleshoot this issue?

-Mike

From: freesurfer-boun...@nmr.mgh.harvard.edu 
 on behalf of Z K 

Sent: Friday, February 3, 2017 1:23:04 PM
To: Freesurfer support list
Subject: [Freesurfer] A note about the Freesurfer license file

Hello All,

Users on newer linux distributions who upgrade from Freesurfer version
5.3 to version 6.0 may get the following error message:

--
GNU libc version: 2.17
ERROR: Systems running GNU glibc version greater than 2.15
   require a newly formatted license file (it's free). Please
   download a new one from the following page:
   http://surfer.nmr.mgh.harvard.edu/registration.html
--

This is a known issue, and as the message says, it is resolved by
downloading a newly formatted license file from our registration page:

   http://surfer.nmr.mgh.harvard.edu/registration.html

Simply overwrite the old license file with the newly formatted one.
Sorry for any inconvenience this may have caused.

-The Freesurfer team
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addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

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Re: [Freesurfer] license file error

[Hoopes, Andrew]

Hi Ri,

It looks like there might be an issue with the license saved at 
/Applications/freesurfer6/.license. Try overwriting this file with your 
license.txt

best,
Andrew


On Nov 29, 2017, at 6:23 PM, Ritobrato Datta 
mailto:ridatpennc...@gmail.com>> wrote:

Hi All,

I am using Mac OS X Sierra and I downloaded free surfer 6 and when running 
recon I am getting the following error

reading from IM-0001-0001.dcm...
--
ERROR: Invalid FreeSurfer license key found in license file 
/Applications/freesurfer6/.license
  If you are outside the NMR-Martinos Center,
  go to http://surfer.nmr.mgh.harvard.edu/registration.html to
  get a valid license file (it's free).
  If you are inside the NMR-Martinos Center,
  make sure to source the standard environment.
--


The license.txt file is a valid license file and the permissions are set as 
follows

-rwxrwxrwx1 root  wheel136 Nov 29 12:48 license.txt

Can you please suggest what seems to be the problem ?

Thanks

Ri
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

[Freesurfer] license file error

[Ritobrato Datta]

Hi All,

I am using Mac OS X Sierra and I downloaded free surfer 6 and when running
recon I am getting the following error

reading from IM-0001-0001.dcm...

--

ERROR: Invalid FreeSurfer license key found in license file
/Applications/freesurfer6/.license

  If you are outside the NMR-Martinos Center,

  go to http://surfer.nmr.mgh.harvard.edu/registration.html to

  get a valid license file (it's free).

  If you are inside the NMR-Martinos Center,

  make sure to source the standard environment.

--


The license.txt file is a valid license file and the permissions are set as
follows

-rwxrwxrwx1 root  wheel136 Nov 29 12:48 license.txt


Can you please suggest what seems to be the problem ?


Thanks


Ri
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Re: [Freesurfer] license file not working

[Anthony Dick]

Hello,

I got it running. I just deleted all old license files, resent the the 
registration. When I got the email I created both a .license and a 
license.txt in $Freesurfer_Home, and it worked. Just one of those things 
I guess?

Anthony


On 2/3/17 12:34 PM, Z K wrote:
> Anthony,
>
> Is this still an issue for you? So long as there is a license file (name
> .license or license.txt) in the FREESURFER_HOME directory, you should be
> all set.
>
> -Zeke
>
> On 02/02/2017 06:46 PM, Anthony Dick wrote:
>> Thanks Matt. I already tried it with a new registration, but it doesn't
>> hurt to try it again. That may be where the issue is. I'll post if that
>> turns out to be the problem. Thanks!
>>
>> Anthony
>>
>>
>> On 2/2/17 6:28 PM, Matt Glasser wrote:
>>> Like I said, they changed the format at some point and stopped
>>> accepting the old format with FS 6.0.  I have used FreeSurfer for a
>>> long time too and found that I had to get a new license file with this
>>> version.
>>>
>>> Peace,
>>>
>>> Matt.
>>>
>>> From: >> <mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Anthony
>>> Dick mailto:ad...@fiu.edu>>
>>> Reply-To: Freesurfer support list >> <mailto:freesurfer@nmr.mgh.harvard.edu>>
>>> Date: Thursday, February 2, 2017 at 5:18 PM
>>> To: >> <mailto:freesurfer@nmr.mgh.harvard.edu>>
>>> Subject: Re: [Freesurfer] license file not working
>>>
>>> Hello,
>>>
>>> I have used my old file, registered under two different emails (and
>>> received the code and made new files each time, named both .license
>>> and license.txt). Restarted the computer etc. I am wondering if it is
>>> a permissions issue. It seems to be finding the file where I put it.
>>> Have never encountered this issue and have been using Freesurfer for
>>> 11 years. If history is any guide, it will probably turn out to be
>>> something stupid that I did :)
>>>
>>> Anthony
>>>
>>>
>>> On 2/2/17 3:40 PM, Trisanna Sprung-Much wrote:
>>>> The .license that it comes with is not the same as the license.txt
>>>> that you have to acquire. I was able to use an old license.txt from
>>>> my Freesurfer 5.3 for 6.0.
>>>>
>>>> Best
>>>>
>>>> Trisanna
>>>>
>>>> --
>>>> Ph.D. Candidate
>>>> McGill University
>>>> Integrated Program in Neuroscience
>>>> Psychology
>>>>
>>>>
>>>> On Thu, Feb 2, 2017 at 3:21 PM, X K >>> <mailto:bnu...@gmail.com>> wrote:
>>>>
>>>>  try to rename the file to license.txt?
>>>>
>>>>  On Thu, Feb 2, 2017 at 9:13 PM, Anthony Dick >>>  <mailto:ad...@fiu.edu>> wrote:
>>>>
>>>>  Hello,
>>>>
>>>>  I have been using Freesurfer for a number of years, and just
>>>>  installed
>>>>  v6.0. I run into this problem:
>>>>
>>>>  
>>>> --
>>>>  ERROR: Invalid FreeSurfer license key found in license file
>>>>  /Applications/freesurfer/.license
>>>> If you are outside the NMR-Martinos Center,
>>>> go to http://surfer.nmr.mgh.harvard.edu/registration.html
>>>>  <http://surfer.nmr.mgh.harvard.edu/registration.html> to
>>>> get a valid license file (it's free).
>>>> If you are inside the NMR-Martinos Center,
>>>> make sure to source the standard environment.
>>>>  
>>>> --
>>>>
>>>>  I have a valid .license file, in the Freesurfer home directory
>>>>
>>>>  Last login: Thu Feb  2 15:04:01 on ttys005
>>>>   freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c 
>>>>  Setting up environment for FreeSurfer/FS-FAST (and FSL)
>>>>  FREESURFER_HOME   /Applications/freesurfer
>>>>  FSFAST_HOME   /Applications/freesurfer/fsfast
>>>>  FSF_OUTPUT_FORMAT nii.gz
>>>>  SUBJECTS_DIR  /Applications/freesurfer/subjects
>>>>  MNI_DIR   /Application

Re: [Freesurfer] Kind Request - Trouble with FreeSurfer LICENSE file

[Z K]

The LICENSE file contained in the freesurfer release is a Software 
License Agreement and has nothing to do with the license file required 
to run the freesurfer program.

To get a license file, please go to our registration page and a license 
will be emailed to you. Just copy the correct portion of text into a 
file called .license or license.txt and place it into your 
FREESURFER_HOME directory. Hope this helps.

   https://surfer.nmr.mgh.harvard.edu/registration.html

-Zeke

On 02/03/2017 02:03 PM, Abhinav Kurada wrote:
> To Whom It May Concern:
>
> I am currently unable to successfuly register my copy of FreeSurfer with
> the license keys I received. Although I found a LICENSE file in the
> FreeSurfer program directory after successfully installing the program,
> I could not find the CUT Here lines as well as the location of placing
> the text emailed to me.
>
> Could you please assist me in helping register my copy of FreeSurfer?
>
> Thank you in advance.
>
> Sincerely,
>
> Abhinav Kurada
> Columbia University
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[Freesurfer] Kind Request - Trouble with FreeSurfer LICENSE file

[Abhinav Kurada]

To Whom It May Concern:

I am currently unable to successfuly register my copy of FreeSurfer with the 
license keys I received. Although I found a LICENSE file in the FreeSurfer 
program directory after successfully installing the program, I could not find 
the CUT Here lines as well as the location of placing the text emailed to me. 

Could you please assist me in helping register my copy of FreeSurfer?

Thank you in advance.

Sincerely,

Abhinav Kurada

Columbia University___
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addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] license file not working

[Matt Glasser]

No worries Bruce!

Matt.

On 2/3/17, 12:52 PM, "Bruce Fischl"
 wrote:

>Hi Matt
>
>just to clarify - our old license format stopped working with newer
>versions of libcrypt and so we were forced to change to the new format.
>It 
>was not done gratuitously on our part or as a way to get people to
>request 
>new licenses - we had no choice.
>
>cheers
>Bruce
>
>
>On Thu, 2 Feb 2017, Matt Glasser wrote:
>
>> Like I said, they changed the format at some point and stopped
>>accepting the old format with FS 6.0.  I
>> have used FreeSurfer for a long time too and found that I had to get a
>>new license file with this
>> version.
>> 
>> Peace,
>> 
>> Matt.
>> 
>> From:  on behalf of Anthony
>>Dick 
>> Reply-To: Freesurfer support list 
>> Date: Thursday, February 2, 2017 at 5:18 PM
>> To: 
>> Subject: Re: [Freesurfer] license file not working
>> 
>> Hello,
>> 
>> I have used my old file, registered under two different emails (and
>>received the code and made new files
>> each time, named both .license and license.txt). Restarted the computer
>>etc. I am wondering if it is a
>> permissions issue. It seems to be finding the file where I put it. Have
>>never encountered this issue and
>> have been using Freesurfer for 11 years. If history is any guide, it
>>will probably turn out to be
>> something stupid that I did :)
>> 
>> Anthony
>> 
>> 
>> On 2/2/17 3:40 PM, Trisanna Sprung-Much wrote:
>>   The .license that it comes with is not the same as the
>>license.txt that you have to acquire.
>>   I was able to use an old license.txt from my Freesurfer 5.3 for
>>6.0.
>> Best
>> 
>> Trisanna
>> 
>> --
>> Ph.D. Candidate McGill University
>> Integrated Program in Neuroscience
>> Psychology
>> 
>> 
>> On Thu, Feb 2, 2017 at 3:21 PM, X K  wrote:
>>   try to rename the file to license.txt?
>> 
>> On Thu, Feb 2, 2017 at 9:13 PM, Anthony Dick  wrote:
>>   Hello,
>>
>>   I have been using Freesurfer for a number of years, and just
>>installed
>>   v6.0. I run into this problem:
>>
>>   
>>-
>>-
>>   ERROR: Invalid FreeSurfer license key found in license file
>>   /Applications/freesurfer/.license
>>  If you are outside the NMR-Martinos Center,
>>  go to http://surfer.nmr.mgh.harvard.edu/registration.html to
>>  get a valid license file (it's free).
>>  If you are inside the NMR-Martinos Center,
>>  make sure to source the standard environment.
>>   
>>-
>>-
>>
>>   I have a valid .license file, in the Freesurfer home directory
>>
>>   Last login: Thu Feb  2 15:04:01 on ttys005
>>    freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c 
>>   Setting up environment for FreeSurfer/FS-FAST (and FSL)
>>   FREESURFER_HOME   /Applications/freesurfer
>>   FSFAST_HOME   /Applications/freesurfer/fsfast
>>   FSF_OUTPUT_FORMAT nii.gz
>>   SUBJECTS_DIR  /Applications/freesurfer/subjects
>>   MNI_DIR   /Applications/freesurfer/mni
>>   [38c9862eb0b0:~] adick% cd /Applications/freesurfer
>>   [38c9862eb0b0:/Applications/freesurfer] adick% ls -al .license
>>   -rw-r--r--  1 root  wheel  140 Feb  2 15:06 .license
>>   [38c9862eb0b0:/Applications/freesurfer] adick%
>>
>>   Any ideas?
>>
>>   Thanks!
>>
>>   Anthony
>> 
>>
>>   --
>>   Anthony Steven Dick, Ph.D.
>>   Associate Professor
>>   Director, Cognitive Neuroscience Program and Graduate Certificate
>>in Cognitive
>>   Neuroscience
>>   Department of Psychology
>>   Florida International University Modesto A. Maidique Campus AHC4
>>454
>>   11200 S.W. 8th Street
>>   Miami, FL 33199
>>   Ph: 305-348-4202; Lab Ph: 305-348-9055; Fx: 305-348-3879
>>   Email: ad...@fiu.edu
>>   Webpage: http://myweb.fiu.edu/adick
>>   Join the Society for the Study of Human Development:
>>http://www.sshdonline.org
>>
>>   ___
>>   Freesurfer mailing list
>>   Freesurfer@nmr.mgh.harvard.edu
>>   https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>&

Re: [Freesurfer] license file not working

[Bruce Fischl]

Hi Matt

just to clarify - our old license format stopped working with newer 
versions of libcrypt and so we were forced to change to the new format. It 
was not done gratuitously on our part or as a way to get people to request 
new licenses - we had no choice.


cheers
Bruce


On Thu, 2 Feb 2017, Matt Glasser wrote:


Like I said, they changed the format at some point and stopped accepting the 
old format with FS 6.0.  I
have used FreeSurfer for a long time too and found that I had to get a new 
license file with this
version.

Peace,

Matt.

From:  on behalf of Anthony Dick 

Reply-To: Freesurfer support list 
Date: Thursday, February 2, 2017 at 5:18 PM
To: 
Subject: Re: [Freesurfer] license file not working

Hello,

I have used my old file, registered under two different emails (and received 
the code and made new files
each time, named both .license and license.txt). Restarted the computer etc. I 
am wondering if it is a
permissions issue. It seems to be finding the file where I put it. Have never 
encountered this issue and
have been using Freesurfer for 11 years. If history is any guide, it will 
probably turn out to be
something stupid that I did :)

Anthony


On 2/2/17 3:40 PM, Trisanna Sprung-Much wrote:
  The .license that it comes with is not the same as the license.txt that 
you have to acquire.
  I was able to use an old license.txt from my Freesurfer 5.3 for 6.0.
Best

Trisanna

--
Ph.D. Candidate McGill University
Integrated Program in Neuroscience
Psychology


On Thu, Feb 2, 2017 at 3:21 PM, X K  wrote:
  try to rename the file to license.txt?

On Thu, Feb 2, 2017 at 9:13 PM, Anthony Dick  wrote:
  Hello,

  I have been using Freesurfer for a number of years, and just installed
  v6.0. I run into this problem:

  --
  ERROR: Invalid FreeSurfer license key found in license file
  /Applications/freesurfer/.license
     If you are outside the NMR-Martinos Center,
     go to http://surfer.nmr.mgh.harvard.edu/registration.html to
     get a valid license file (it's free).
     If you are inside the NMR-Martinos Center,
     make sure to source the standard environment.
  --

  I have a valid .license file, in the Freesurfer home directory

  Last login: Thu Feb  2 15:04:01 on ttys005
   freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c 
  Setting up environment for FreeSurfer/FS-FAST (and FSL)
  FREESURFER_HOME   /Applications/freesurfer
  FSFAST_HOME       /Applications/freesurfer/fsfast
  FSF_OUTPUT_FORMAT nii.gz
  SUBJECTS_DIR      /Applications/freesurfer/subjects
  MNI_DIR           /Applications/freesurfer/mni
  [38c9862eb0b0:~] adick% cd /Applications/freesurfer
  [38c9862eb0b0:/Applications/freesurfer] adick% ls -al .license
  -rw-r--r--  1 root  wheel  140 Feb  2 15:06 .license
  [38c9862eb0b0:/Applications/freesurfer] adick%

  Any ideas?

  Thanks!

  Anthony


  --
  Anthony Steven Dick, Ph.D.
  Associate Professor
  Director, Cognitive Neuroscience Program and Graduate Certificate in 
Cognitive
  Neuroscience
  Department of Psychology
  Florida International University Modesto A. Maidique Campus AHC4 454
  11200 S.W. 8th Street
  Miami, FL 33199
  Ph: 305-348-4202; Lab Ph: 305-348-9055; Fx: 305-348-3879
  Email: ad...@fiu.edu
  Webpage: http://myweb.fiu.edu/adick
  Join the Society for the Study of Human Development: 
http://www.sshdonline.org

  ___
  Freesurfer mailing list
  Freesurfer@nmr.mgh.harvard.edu
  https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


  The information in this e-mail is intended only for the person to whom it 
is
  addressed. If you believe this e-mail was sent to you in error and the 
e-mail
  contains patient information, please contact the Partners Compliance 
HelpLine at
  http://www.partners.org/complianceline . If the e-mail was sent to you in 
error
  but does not contain patient information, please contact the sender and 
properly
  dispose of the e-mail.




--
-
Kong Xiangzhen
State Key Laboratory of Cognitive Neuroscience and Learning,
Beijing Normal University,
Beijing, China, 100875.

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contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e

[Freesurfer] A note about the Freesurfer license file

[Z K]

Hello All,

Users on newer linux distributions who upgrade from Freesurfer version 
5.3 to version 6.0 may get the following error message:

--
GNU libc version: 2.17
ERROR: Systems running GNU glibc version greater than 2.15
   require a newly formatted license file (it's free). Please
   download a new one from the following page:
   http://surfer.nmr.mgh.harvard.edu/registration.html
--

This is a known issue, and as the message says, it is resolved by 
downloading a newly formatted license file from our registration page:

   http://surfer.nmr.mgh.harvard.edu/registration.html

Simply overwrite the old license file with the newly formatted one. 
Sorry for any inconvenience this may have caused.

-The Freesurfer team
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] license file not working

[Z K]

Anthony,

Is this still an issue for you? So long as there is a license file (name 
.license or license.txt) in the FREESURFER_HOME directory, you should be 
all set.

-Zeke

On 02/02/2017 06:46 PM, Anthony Dick wrote:
> Thanks Matt. I already tried it with a new registration, but it doesn't
> hurt to try it again. That may be where the issue is. I'll post if that
> turns out to be the problem. Thanks!
>
> Anthony
>
>
> On 2/2/17 6:28 PM, Matt Glasser wrote:
>> Like I said, they changed the format at some point and stopped
>> accepting the old format with FS 6.0.  I have used FreeSurfer for a
>> long time too and found that I had to get a new license file with this
>> version.
>>
>> Peace,
>>
>> Matt.
>>
>> From: > <mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Anthony
>> Dick mailto:ad...@fiu.edu>>
>> Reply-To: Freesurfer support list > <mailto:freesurfer@nmr.mgh.harvard.edu>>
>> Date: Thursday, February 2, 2017 at 5:18 PM
>> To: > <mailto:freesurfer@nmr.mgh.harvard.edu>>
>> Subject: Re: [Freesurfer] license file not working
>>
>> Hello,
>>
>> I have used my old file, registered under two different emails (and
>> received the code and made new files each time, named both .license
>> and license.txt). Restarted the computer etc. I am wondering if it is
>> a permissions issue. It seems to be finding the file where I put it.
>> Have never encountered this issue and have been using Freesurfer for
>> 11 years. If history is any guide, it will probably turn out to be
>> something stupid that I did :)
>>
>> Anthony
>>
>>
>> On 2/2/17 3:40 PM, Trisanna Sprung-Much wrote:
>>> The .license that it comes with is not the same as the license.txt
>>> that you have to acquire. I was able to use an old license.txt from
>>> my Freesurfer 5.3 for 6.0.
>>>
>>> Best
>>>
>>> Trisanna
>>>
>>> --
>>> Ph.D. Candidate
>>> McGill University
>>> Integrated Program in Neuroscience
>>> Psychology
>>>
>>>
>>> On Thu, Feb 2, 2017 at 3:21 PM, X K >> <mailto:bnu...@gmail.com>> wrote:
>>>
>>> try to rename the file to license.txt?
>>>
>>> On Thu, Feb 2, 2017 at 9:13 PM, Anthony Dick >> <mailto:ad...@fiu.edu>> wrote:
>>>
>>> Hello,
>>>
>>> I have been using Freesurfer for a number of years, and just
>>> installed
>>> v6.0. I run into this problem:
>>>
>>> 
>>> --
>>> ERROR: Invalid FreeSurfer license key found in license file
>>> /Applications/freesurfer/.license
>>>If you are outside the NMR-Martinos Center,
>>>go to http://surfer.nmr.mgh.harvard.edu/registration.html
>>> <http://surfer.nmr.mgh.harvard.edu/registration.html> to
>>>get a valid license file (it's free).
>>>If you are inside the NMR-Martinos Center,
>>>make sure to source the standard environment.
>>> 
>>> --
>>>
>>> I have a valid .license file, in the Freesurfer home directory
>>>
>>> Last login: Thu Feb  2 15:04:01 on ttys005
>>>  freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c 
>>> Setting up environment for FreeSurfer/FS-FAST (and FSL)
>>> FREESURFER_HOME   /Applications/freesurfer
>>> FSFAST_HOME   /Applications/freesurfer/fsfast
>>> FSF_OUTPUT_FORMAT nii.gz
>>> SUBJECTS_DIR  /Applications/freesurfer/subjects
>>> MNI_DIR   /Applications/freesurfer/mni
>>> [38c9862eb0b0:~] adick% cd /Applications/freesurfer
>>> [38c9862eb0b0:/Applications/freesurfer] adick% ls -al .license
>>> -rw-r--r--  1 root  wheel  140 Feb  2 15:06 .license
>>> [38c9862eb0b0:/Applications/freesurfer] adick%
>>>
>>> Any ideas?
>>>
>>> Thanks!
>>>
>>> Anthony
>>>
>>>
>>> --
>>> Anthony Steven Dick, Ph.D.
>>> Associate Professor
>>> Director, Cognitive Neuroscience Program and Graduate
>>> Certificate in Cognitive Neur

Re: [Freesurfer] license file not working

[Matt Glasser]

Strange, that fixed things right up for me.  You might make sure you know
where you are calling FreeSurfer from and that there are no old license
files lying around.

Peace,

Matt.

From:   on behalf of Anthony Dick

Reply-To:  Freesurfer support list 
Date:  Thursday, February 2, 2017 at 5:46 PM
To:  
Subject:  Re: [Freesurfer] license file not working


 

Thanks Matt. I already tried it with a new registration, but it doesn't hurt
to try it again. That may be where the issue is. I'll post if that turns out
to be the problem. Thanks!
 

Anthony
 
 
 
On 2/2/17 6:28 PM, Matt Glasser wrote:
 
 
>   
> Like I said, they changed the format at some point and stopped accepting the
> old format with FS 6.0.  I have used FreeSurfer for a long time too and found
> that I had to get a new license file with this version.
>  
> 
>  
>  
> Peace,
>  
> 
>  
>  
> Matt.
>  
> 
>  
>   
> From:   on behalf of Anthony Dick
> 
>  Reply-To:  Freesurfer support list 
>  Date:  Thursday, February 2, 2017 at 5:18 PM
>  To:  
>  Subject:  Re: [Freesurfer] license file not working
>  
>  
> 
>  
>  
>  
>  
> 
> Hello,
>  
> 
> I have used my old file, registered under two different emails (and received
> the code and made new files each time, named both .license and license.txt).
> Restarted the computer etc. I am wondering if it is a permissions issue. It
> seems to be finding the file where I put it. Have never encountered this issue
> and have been using Freesurfer for 11 years. If history is any guide, it will
> probably turn out to be something stupid that I did :)
>  
> 
> Anthony
>  
>  
>  
> On 2/2/17 3:40 PM, Trisanna Sprung-Much wrote:
>  
>  
>>  
>> The .license that it comes with is not the same as the license.txt that you
>> have to acquire. I was able to use an old license.txt from my Freesurfer 5.3
>> for 6.0. 
>> 
>>  
>>  
>> Best
>>  
>> 
>>  
>>  
>> Trisanna
>>  
>>  
>> 
>>  
>>  
>>  
>>  
>>  
>> --
>>  
>> Ph.D. Candidate 
>> McGill University
>>   
>> Integrated Program in Neuroscience
>>  
>> Psychology
>>  
>> 
>>  
>>  
>>  
>>  
>>  
>>  
>>  
>>  
>>  
>> On Thu, Feb 2, 2017 at 3:21 PM, X K  wrote:
>>  
>>>  
>>> try to rename the file to license.txt?
>>>  
>>>  
>>>  
>>> 
>>>  
>>> On Thu, Feb 2, 2017 at 9:13 PM, Anthony Dick  wrote:
>>>  
>>>> Hello,
>>>>  
>>>>  I have been using Freesurfer for a number of years, and just installed
>>>>  v6.0. I run into this problem:
>>>>  
>>>>  --
>>>>  ERROR: Invalid FreeSurfer license key found in license file
>>>>  /Applications/freesurfer/.license
>>>> If you are outside the NMR-Martinos Center,
>>>> go to http://surfer.nmr.mgh.harvard.edu/registration.html to
>>>> get a valid license file (it's free).
>>>> If you are inside the NMR-Martinos Center,
>>>> make sure to source the standard environment.
>>>>  --
>>>>  
>>>>  I have a valid .license file, in the Freesurfer home directory
>>>>  
>>>>  Last login: Thu Feb  2 15:04:01 on ttys005
>>>>   freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c 
>>>>  Setting up environment for FreeSurfer/FS-FAST (and FSL)
>>>>  FREESURFER_HOME   /Applications/freesurfer
>>>>  FSFAST_HOME   /Applications/freesurfer/fsfast
>>>>  FSF_OUTPUT_FORMAT nii.gz
>>>>  SUBJECTS_DIR  /Applications/freesurfer/subjects
>>>>  MNI_DIR   /Applications/freesurfer/mni
>>>>  [38c9862eb0b0:~] adick% cd /Applications/freesurfer
>>>>  [38c9862eb0b0:/Applications/freesurfer] adick% ls -al .license
>>>>  -rw-r--r--  1 root  wheel  140 Feb  2 15:06 .license
>>>>  [38c9862eb0b0:/Applications/freesurfer] adick%
>>>>  
>>>>  Any ideas?
>>>>  
>>>>  Thanks!
>>>>  
>>>>  Anthony
>>>>  
>>>>  
>>>>  --
>>>>  Anthony Steven Dick, Ph.D.
>>>>  Associate Professor
>>>>  Director, Cognitive Neuroscience Program and Graduate Certificate in
>>>> Cognitive Neuroscience
>>&

Re: [Freesurfer] license file not working

[Anthony Dick]

Thanks Matt. I already tried it with a new registration, but it doesn't 
hurt to try it again. That may be where the issue is. I'll post if that 
turns out to be the problem. Thanks!


Anthony


On 2/2/17 6:28 PM, Matt Glasser wrote:
Like I said, they changed the format at some point and stopped 
accepting the old format with FS 6.0.  I have used FreeSurfer for a 
long time too and found that I had to get a new license file with this 
version.


Peace,

Matt.

From: <mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Anthony 
Dick mailto:ad...@fiu.edu>>
Reply-To: Freesurfer support list <mailto:freesurfer@nmr.mgh.harvard.edu>>

Date: Thursday, February 2, 2017 at 5:18 PM
To: <mailto:freesurfer@nmr.mgh.harvard.edu>>

Subject: Re: [Freesurfer] license file not working

Hello,

I have used my old file, registered under two different emails (and 
received the code and made new files each time, named both .license 
and license.txt). Restarted the computer etc. I am wondering if it is 
a permissions issue. It seems to be finding the file where I put it. 
Have never encountered this issue and have been using Freesurfer for 
11 years. If history is any guide, it will probably turn out to be 
something stupid that I did :)


Anthony


On 2/2/17 3:40 PM, Trisanna Sprung-Much wrote:
The .license that it comes with is not the same as the license.txt 
that you have to acquire. I was able to use an old license.txt from 
my Freesurfer 5.3 for 6.0.


Best

Trisanna

--
Ph.D. Candidate
McGill University
Integrated Program in Neuroscience
Psychology


On Thu, Feb 2, 2017 at 3:21 PM, X K <mailto:bnu...@gmail.com>> wrote:


try to rename the file to license.txt?

On Thu, Feb 2, 2017 at 9:13 PM, Anthony Dick mailto:ad...@fiu.edu>> wrote:

Hello,

I have been using Freesurfer for a number of years, and just
installed
v6.0. I run into this problem:


--
ERROR: Invalid FreeSurfer license key found in license file
/Applications/freesurfer/.license
   If you are outside the NMR-Martinos Center,
   go to http://surfer.nmr.mgh.harvard.edu/registration.html
<http://surfer.nmr.mgh.harvard.edu/registration.html> to
   get a valid license file (it's free).
   If you are inside the NMR-Martinos Center,
   make sure to source the standard environment.

--

I have a valid .license file, in the Freesurfer home directory

Last login: Thu Feb  2 15:04:01 on ttys005
 freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c 
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME   /Applications/freesurfer
FSFAST_HOME  /Applications/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR /Applications/freesurfer/subjects
MNI_DIR  /Applications/freesurfer/mni
[38c9862eb0b0:~] adick% cd /Applications/freesurfer
[38c9862eb0b0:/Applications/freesurfer] adick% ls -al .license
-rw-r--r--  1 root  wheel  140 Feb  2 15:06 .license
[38c9862eb0b0:/Applications/freesurfer] adick%

Any ideas?

Thanks!

Anthony


--
Anthony Steven Dick, Ph.D.
Associate Professor
Director, Cognitive Neuroscience Program and Graduate
Certificate in Cognitive Neuroscience
Department of Psychology
Florida International University Modesto A. Maidique Campus
AHC4 454
11200 S.W. 8th Street
Miami, FL 33199
Ph: 305-348-4202 ; Lab Ph:
305-348-9055 ; Fx: 305-348-3879

Email: ad...@fiu.edu <mailto:ad...@fiu.edu>
Webpage: http://myweb.fiu.edu/adick
Join the Society for the Study of Human Development:
http://www.sshdonline.org

___
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Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
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<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>


The information in this e-mail is intended only for the
person to whom it is
addressed. If you believe this e-mail was sent to you in
error and the e-mail
contains patient information, please contact the Partners
Compliance HelpLine at
http://www.partners.org/complianceline
<http://www.partners.org/complianceline> . If the e-mail was
sent to you in error
but does not contain patient information, please contact the
sender and properly
dispose of the e-mail.




-- 

Re: [Freesurfer] license file not working

[Matt Glasser]

Like I said, they changed the format at some point and stopped accepting the
old format with FS 6.0.  I have used FreeSurfer for a long time too and
found that I had to get a new license file with this version.

Peace,

Matt.

From:   on behalf of Anthony Dick

Reply-To:  Freesurfer support list 
Date:  Thursday, February 2, 2017 at 5:18 PM
To:  
Subject:  Re: [Freesurfer] license file not working


 

Hello,
 

I have used my old file, registered under two different emails (and received
the code and made new files each time, named both .license and license.txt).
Restarted the computer etc. I am wondering if it is a permissions issue. It
seems to be finding the file where I put it. Have never encountered this
issue and have been using Freesurfer for 11 years. If history is any guide,
it will probably turn out to be something stupid that I did :)
 

Anthony
 
 
 
On 2/2/17 3:40 PM, Trisanna Sprung-Much wrote:
 
 
>   
> The .license that it comes with is not the same as the license.txt that you
> have to acquire. I was able to use an old license.txt from my Freesurfer 5.3
> for 6.0. 
> 
>  
>  
> Best
>  
> 
>  
>  
> Trisanna
>  
>  
> 
>  
>  
>  
>  
>  
> --
>  
> Ph.D. Candidate 
> McGill University
>   
> Integrated Program in Neuroscience
>  
> Psychology
>  
> 
>  
>  
>  
>  
>  
>  
>  
>  
>  
> On Thu, Feb 2, 2017 at 3:21 PM, X K  wrote:
>  
>>  
>> try to rename the file to license.txt?
>>  
>>  
>>  
>> 
>>  
>> On Thu, Feb 2, 2017 at 9:13 PM, Anthony Dick  wrote:
>>  
>>> Hello,
>>>  
>>>  I have been using Freesurfer for a number of years, and just installed
>>>  v6.0. I run into this problem:
>>>  
>>>  --
>>>  ERROR: Invalid FreeSurfer license key found in license file
>>>  /Applications/freesurfer/.license
>>> If you are outside the NMR-Martinos Center,
>>> go to http://surfer.nmr.mgh.harvard.edu/registration.html to
>>> get a valid license file (it's free).
>>> If you are inside the NMR-Martinos Center,
>>> make sure to source the standard environment.
>>>  --
>>>  
>>>  I have a valid .license file, in the Freesurfer home directory
>>>  
>>>  Last login: Thu Feb  2 15:04:01 on ttys005
>>>   freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c 
>>>  Setting up environment for FreeSurfer/FS-FAST (and FSL)
>>>  FREESURFER_HOME   /Applications/freesurfer
>>>  FSFAST_HOME   /Applications/freesurfer/fsfast
>>>  FSF_OUTPUT_FORMAT nii.gz
>>>  SUBJECTS_DIR  /Applications/freesurfer/subjects
>>>  MNI_DIR   /Applications/freesurfer/mni
>>>  [38c9862eb0b0:~] adick% cd /Applications/freesurfer
>>>  [38c9862eb0b0:/Applications/freesurfer] adick% ls -al .license
>>>  -rw-r--r--  1 root  wheel  140 Feb  2 15:06 .license
>>>  [38c9862eb0b0:/Applications/freesurfer] adick%
>>>  
>>>  Any ideas?
>>>  
>>>  Thanks!
>>>  
>>>  Anthony
>>>  
>>>  
>>>  --
>>>  Anthony Steven Dick, Ph.D.
>>>  Associate Professor
>>>  Director, Cognitive Neuroscience Program and Graduate Certificate in
>>> Cognitive Neuroscience
>>>  Department of Psychology
>>>  Florida International University Modesto A. Maidique Campus AHC4 454
>>>  11200 S.W. 8th Street
>>>  Miami, FL 33199
>>>  Ph: 305-348-4202  ; Lab Ph: 305-348-9055
>>>  ; Fx: 305-348-3879 
>>>  Email: ad...@fiu.edu
>>>  Webpage: http://myweb.fiu.edu/adick
>>>  Join the Society for the Study of Human Development:
>>> http://www.sshdonline.org
>>>  
>>>  ___
>>>  Freesurfer mailing list
>>>  Freesurfer@nmr.mgh.harvard.edu
>>>  https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>  
>>>  
>>>  The information in this e-mail is intended only for the person to whom it
>>> is
>>>  addressed. If you believe this e-mail was sent to you in error and the
>>> e-mail
>>>  contains patient information, please contact the Partners Compliance
>>> HelpLine at
>>>  http://www.partners.org/complianceline . If the e-mail was sent to you in
>>> error
>>>  but does not contain patient information, please contact the sender and
>>> proper

Re: [Freesurfer] license file not working

[Anthony Dick]

Hello,

I have used my old file, registered under two different emails (and 
received the code and made new files each time, named both .license and 
license.txt). Restarted the computer etc. I am wondering if it is a 
permissions issue. It seems to be finding the file where I put it. Have 
never encountered this issue and have been using Freesurfer for 11 
years. If history is any guide, it will probably turn out to be 
something stupid that I did :)


Anthony


On 2/2/17 3:40 PM, Trisanna Sprung-Much wrote:
The .license that it comes with is not the same as the license.txt 
that you have to acquire. I was able to use an old license.txt from my 
Freesurfer 5.3 for 6.0.


Best

Trisanna

--
Ph.D. Candidate
McGill University
Integrated Program in Neuroscience
Psychology


On Thu, Feb 2, 2017 at 3:21 PM, X K > wrote:


try to rename the file to license.txt?

On Thu, Feb 2, 2017 at 9:13 PM, Anthony Dick mailto:ad...@fiu.edu>> wrote:

Hello,

I have been using Freesurfer for a number of years, and just
installed
v6.0. I run into this problem:


--
ERROR: Invalid FreeSurfer license key found in license file
/Applications/freesurfer/.license
   If you are outside the NMR-Martinos Center,
   go to http://surfer.nmr.mgh.harvard.edu/registration.html
 to
   get a valid license file (it's free).
   If you are inside the NMR-Martinos Center,
   make sure to source the standard environment.

--

I have a valid .license file, in the Freesurfer home directory

Last login: Thu Feb  2 15:04:01 on ttys005
 freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c 
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME   /Applications/freesurfer
FSFAST_HOME   /Applications/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR  /Applications/freesurfer/subjects
MNI_DIR   /Applications/freesurfer/mni
[38c9862eb0b0:~] adick% cd /Applications/freesurfer
[38c9862eb0b0:/Applications/freesurfer] adick% ls -al .license
-rw-r--r--  1 root  wheel  140 Feb  2 15:06 .license
[38c9862eb0b0:/Applications/freesurfer] adick%

Any ideas?

Thanks!

Anthony


--
Anthony Steven Dick, Ph.D.
Associate Professor
Director, Cognitive Neuroscience Program and Graduate
Certificate in Cognitive Neuroscience
Department of Psychology
Florida International University Modesto A. Maidique Campus
AHC4 454
11200 S.W. 8th Street
Miami, FL 33199
Ph: 305-348-4202 ; Lab Ph:
305-348-9055 ; Fx: 305-348-3879

Email: ad...@fiu.edu 
Webpage: http://myweb.fiu.edu/adick
Join the Society for the Study of Human Development:
http://www.sshdonline.org

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu

https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer



The information in this e-mail is intended only for the person
to whom it is
addressed. If you believe this e-mail was sent to you in error
and the e-mail
contains patient information, please contact the Partners
Compliance HelpLine at
http://www.partners.org/complianceline
 . If the e-mail was
sent to you in error
but does not contain patient information, please contact the
sender and properly
dispose of the e-mail.




-- 
-

Kong Xiangzhen
State Key Laboratory of Cognitive Neuroscience and Learning,
Beijing Normal University,
Beijing, China, 100875.

___
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The information in this e-mail is intended only for the person to
whom it is
addressed. If you believe this e-mail was sent to you in error and
the e-mail
contains patient information, please contact the Partners
Compliance HelpLine at
http://www.partners.org/complianceline
 . If the e-mail was sent
to you 

Re: [Freesurfer] license file not working

[Trisanna Sprung-Much]

The .license that it comes with is not the same as the license.txt that you
have to acquire. I was able to use an old license.txt from my Freesurfer
5.3 for 6.0.

Best

Trisanna

--
Ph.D. Candidate
McGill University
Integrated Program in Neuroscience
Psychology


On Thu, Feb 2, 2017 at 3:21 PM, X K  wrote:

> try to rename the file to license.txt?
>
> On Thu, Feb 2, 2017 at 9:13 PM, Anthony Dick  wrote:
>
>> Hello,
>>
>> I have been using Freesurfer for a number of years, and just installed
>> v6.0. I run into this problem:
>>
>> 
>> --
>> ERROR: Invalid FreeSurfer license key found in license file
>> /Applications/freesurfer/.license
>>If you are outside the NMR-Martinos Center,
>>go to http://surfer.nmr.mgh.harvard.edu/registration.html to
>>get a valid license file (it's free).
>>If you are inside the NMR-Martinos Center,
>>make sure to source the standard environment.
>> 
>> --
>>
>> I have a valid .license file, in the Freesurfer home directory
>>
>> Last login: Thu Feb  2 15:04:01 on ttys005
>>  freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c 
>> Setting up environment for FreeSurfer/FS-FAST (and FSL)
>> FREESURFER_HOME   /Applications/freesurfer
>> FSFAST_HOME   /Applications/freesurfer/fsfast
>> FSF_OUTPUT_FORMAT nii.gz
>> SUBJECTS_DIR  /Applications/freesurfer/subjects
>> MNI_DIR   /Applications/freesurfer/mni
>> [38c9862eb0b0:~] adick% cd /Applications/freesurfer
>> [38c9862eb0b0:/Applications/freesurfer] adick% ls -al .license
>> -rw-r--r--  1 root  wheel  140 Feb  2 15:06 .license
>> [38c9862eb0b0:/Applications/freesurfer] adick%
>>
>> Any ideas?
>>
>> Thanks!
>>
>> Anthony
>>
>>
>> --
>> Anthony Steven Dick, Ph.D.
>> Associate Professor
>> Director, Cognitive Neuroscience Program and Graduate Certificate in
>> Cognitive Neuroscience
>> Department of Psychology
>> Florida International University Modesto A. Maidique Campus AHC4 454
>> 11200 S.W. 8th Street
>> Miami, FL 33199
>> Ph: 305-348-4202 <(305)%20348-4202>; Lab Ph: 305-348-9055
>> <(305)%20348-9055>; Fx: 305-348-3879 <(305)%20348-3879>
>> Email: ad...@fiu.edu
>> Webpage: http://myweb.fiu.edu/adick
>> Join the Society for the Study of Human Development:
>> http://www.sshdonline.org
>>
>> ___
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>> The information in this e-mail is intended only for the person to whom it
>> is
>> addressed. If you believe this e-mail was sent to you in error and the
>> e-mail
>> contains patient information, please contact the Partners Compliance
>> HelpLine at
>> http://www.partners.org/complianceline . If the e-mail was sent to you
>> in error
>> but does not contain patient information, please contact the sender and
>> properly
>> dispose of the e-mail.
>>
>>
>
>
> --
> 
> -
> Kong Xiangzhen
> State Key Laboratory of Cognitive Neuroscience and Learning,
> Beijing Normal University,
> Beijing, China, 100875.
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>
___
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] license file not working

[Matt Glasser]

They updated the format so you have to get another.

Peace,

Matt.

On 2/2/17, 2:13 PM, "Anthony Dick"  wrote:

>Hello,
>
>I have been using Freesurfer for a number of years, and just installed
>v6.0. I run into this problem:
>
>--
>ERROR: Invalid FreeSurfer license key found in license file
>/Applications/freesurfer/.license
>   If you are outside the NMR-Martinos Center,
>   go to http://surfer.nmr.mgh.harvard.edu/registration.html to
>   get a valid license file (it's free).
>   If you are inside the NMR-Martinos Center,
>   make sure to source the standard environment.
>--
>
>I have a valid .license file, in the Freesurfer home directory
>
>Last login: Thu Feb  2 15:04:01 on ttys005
> freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c 
>Setting up environment for FreeSurfer/FS-FAST (and FSL)
>FREESURFER_HOME   /Applications/freesurfer
>FSFAST_HOME   /Applications/freesurfer/fsfast
>FSF_OUTPUT_FORMAT nii.gz
>SUBJECTS_DIR  /Applications/freesurfer/subjects
>MNI_DIR   /Applications/freesurfer/mni
>[38c9862eb0b0:~] adick% cd /Applications/freesurfer
>[38c9862eb0b0:/Applications/freesurfer] adick% ls -al .license
>-rw-r--r--  1 root  wheel  140 Feb  2 15:06 .license
>[38c9862eb0b0:/Applications/freesurfer] adick%
>
>Any ideas?
>
>Thanks!
>
>Anthony
>
>
>-- 
>Anthony Steven Dick, Ph.D.
>Associate Professor
>Director, Cognitive Neuroscience Program and Graduate Certificate in
>Cognitive Neuroscience
>Department of Psychology
>Florida International University Modesto A. Maidique Campus AHC4 454
>11200 S.W. 8th Street
>Miami, FL 33199
>Ph: 305-348-4202; Lab Ph: 305-348-9055; Fx: 305-348-3879
>Email: ad...@fiu.edu
>Webpage: http://myweb.fiu.edu/adick
>Join the Society for the Study of Human Development:
>http://www.sshdonline.org
>
>___
>Freesurfer mailing list
>Freesurfer@nmr.mgh.harvard.edu
>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>The information in this e-mail is intended only for the person to whom it
>is
>addressed. If you believe this e-mail was sent to you in error and the
>e-mail
>contains patient information, please contact the Partners Compliance
>HelpLine at
>http://www.partners.org/complianceline . If the e-mail was sent to you in
>error
>but does not contain patient information, please contact the sender and
>properly
>dispose of the e-mail.
>


___
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Re: [Freesurfer] license file not working

[X K]

try to rename the file to license.txt?

On Thu, Feb 2, 2017 at 9:13 PM, Anthony Dick  wrote:

> Hello,
>
> I have been using Freesurfer for a number of years, and just installed
> v6.0. I run into this problem:
>
> --
> ERROR: Invalid FreeSurfer license key found in license file
> /Applications/freesurfer/.license
>If you are outside the NMR-Martinos Center,
>go to http://surfer.nmr.mgh.harvard.edu/registration.html to
>get a valid license file (it's free).
>If you are inside the NMR-Martinos Center,
>make sure to source the standard environment.
> --
>
> I have a valid .license file, in the Freesurfer home directory
>
> Last login: Thu Feb  2 15:04:01 on ttys005
>  freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c 
> Setting up environment for FreeSurfer/FS-FAST (and FSL)
> FREESURFER_HOME   /Applications/freesurfer
> FSFAST_HOME   /Applications/freesurfer/fsfast
> FSF_OUTPUT_FORMAT nii.gz
> SUBJECTS_DIR  /Applications/freesurfer/subjects
> MNI_DIR   /Applications/freesurfer/mni
> [38c9862eb0b0:~] adick% cd /Applications/freesurfer
> [38c9862eb0b0:/Applications/freesurfer] adick% ls -al .license
> -rw-r--r--  1 root  wheel  140 Feb  2 15:06 .license
> [38c9862eb0b0:/Applications/freesurfer] adick%
>
> Any ideas?
>
> Thanks!
>
> Anthony
>
>
> --
> Anthony Steven Dick, Ph.D.
> Associate Professor
> Director, Cognitive Neuroscience Program and Graduate Certificate in
> Cognitive Neuroscience
> Department of Psychology
> Florida International University Modesto A. Maidique Campus AHC4 454
> 11200 S.W. 8th Street
> Miami, FL 33199
> Ph: 305-348-4202; Lab Ph: 305-348-9055; Fx: 305-348-3879
> Email: ad...@fiu.edu
> Webpage: http://myweb.fiu.edu/adick
> Join the Society for the Study of Human Development:
> http://www.sshdonline.org
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>


-- 
-
Kong Xiangzhen
State Key Laboratory of Cognitive Neuroscience and Learning,
Beijing Normal University,
Beijing, China, 100875.
___
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Freesurfer@nmr.mgh.harvard.edu
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
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[Freesurfer] license file not working

[Anthony Dick]

Hello,

I have been using Freesurfer for a number of years, and just installed 
v6.0. I run into this problem:

--
ERROR: Invalid FreeSurfer license key found in license file 
/Applications/freesurfer/.license
   If you are outside the NMR-Martinos Center,
   go to http://surfer.nmr.mgh.harvard.edu/registration.html to
   get a valid license file (it's free).
   If you are inside the NMR-Martinos Center,
   make sure to source the standard environment.
--

I have a valid .license file, in the Freesurfer home directory

Last login: Thu Feb  2 15:04:01 on ttys005
 freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c 
Setting up environment for FreeSurfer/FS-FAST (and FSL)
FREESURFER_HOME   /Applications/freesurfer
FSFAST_HOME   /Applications/freesurfer/fsfast
FSF_OUTPUT_FORMAT nii.gz
SUBJECTS_DIR  /Applications/freesurfer/subjects
MNI_DIR   /Applications/freesurfer/mni
[38c9862eb0b0:~] adick% cd /Applications/freesurfer
[38c9862eb0b0:/Applications/freesurfer] adick% ls -al .license
-rw-r--r--  1 root  wheel  140 Feb  2 15:06 .license
[38c9862eb0b0:/Applications/freesurfer] adick%

Any ideas?

Thanks!

Anthony


-- 
Anthony Steven Dick, Ph.D.
Associate Professor
Director, Cognitive Neuroscience Program and Graduate Certificate in Cognitive 
Neuroscience
Department of Psychology
Florida International University Modesto A. Maidique Campus AHC4 454
11200 S.W. 8th Street
Miami, FL 33199
Ph: 305-348-4202; Lab Ph: 305-348-9055; Fx: 305-348-3879
Email: ad...@fiu.edu
Webpage: http://myweb.fiu.edu/adick
Join the Society for the Study of Human Development: http://www.sshdonline.org

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Re: [Freesurfer] license file not found

[Amlung, Michael]

Yep, that did the trick. I found an archived post where someone had a similar 
issue.

Thanks.




Michael Amlung, Ph.D.
Assistant Professor

Department of Psychiatry and Behavioural Neurosciences
DeGroote School of Medicine
McMaster University

Peter Boris Centre for Addictions Research
100 West 5th Street
Hamilton, Ontario L8N 3K7 
Canada

Telephone: (+1) 905-522-1155, ext. 39014
Email: amlu...@mcmaster.ca


-Original Message-
From: freesurfer-boun...@nmr.mgh.harvard.edu 
[mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of Bruce Fischl
Sent: Monday, August 31, 2015 9:58 AM
To: Freesurfer support list
Subject: Re: [Freesurfer] license file not found

Hi Michael

does  /Applications/freesurfer/.license exist? Do you have permission to read 
it? Don't name the file license.txt - rename it to .license

cheers
Bruce

On Mon, 31 Aug 2015, Amlung, Michael wrote:

> Hi All,
> 
> This is my first time using the software. I have installed FreeSurfer 
> on a Mac machine and everything installed fine. I obtained a license 
> using the form and saved the four lines to a license.txt file in my 
> FREESURFER_HOME directory (/Applications/freesurfer on my computer). 
> Yet when I try to load tkmedit I get the following error:
> 
> 
> ERROR: FreeSurfer license file /Applications/freesurfer/.license not found.
> 
>   If you are outside the NMR-Martinos Center,
> 
>   go to http://surfer.nmr.mgh.harvard.edu to
> 
>   get a valid license file (it's free).
> 
>   If you are inside the NMR-Martinos Center,
> 
>   make sure to source the standard environment.
> 
> 
> 
> Thanks for any solutions.
> 
> 
> Michael Amlung
> 
> McMaster University
> 
> 
>

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Re: [Freesurfer] license file not found

[Bruce Fischl]

Hi Michael

does  /Applications/freesurfer/.license exist? Do you have permission to 
read it? Don't name the file license.txt - rename it to .license


cheers
Bruce

On Mon, 31 Aug 2015, Amlung, Michael wrote:


Hi All,

This is my first time using the software. I have installed FreeSurfer on a
Mac machine and everything installed fine. I obtained a license using the
form and saved the four lines to a license.txt file in my FREESURFER_HOME
directory (/Applications/freesurfer on my computer). Yet when I try to load
tkmedit I get the following error: 


ERROR: FreeSurfer license file /Applications/freesurfer/.license not found.

  If you are outside the NMR-Martinos Center,

  go to http://surfer.nmr.mgh.harvard.edu to 

  get a valid license file (it's free).

  If you are inside the NMR-Martinos Center,

  make sure to source the standard environment.



Thanks for any solutions.


Michael Amlung

McMaster University


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dispose of the e-mail.

[Freesurfer] license file not found

[Amlung, Michael]

Hi All, 


This is my first time using the software. I have installed FreeSurfer on a Mac machine and everything installed fine. I obtained a license using the form and saved the four lines to a license.txt file in my FREESURFER_HOME
 directory (/Applications/freesurfer on my computer). Yet when I try to load tkmedit I get the following error: 





ERROR: FreeSurfer license file /Applications/freesurfer/.license not found.
  If you are outside the NMR-Martinos Center,
  go to http://surfer.nmr.mgh.harvard.edu to 
  get a valid license file (it's free).
  If you are inside the NMR-Martinos Center,
  make sure to source the standard environment.




Thanks for any solutions.


Michael Amlung
McMaster University






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but does not contain patient information, please contact the sender and properly
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[Freesurfer] license file problem solved

[Philipp G. Sämann]

Hi all,

the license file problem I have described earlier today could be solved
by following earlier hints on a workaround, mainly in the following two
contributions:

https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg29404.html

https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg29433.html

It turned out to be the same problem: by an update of the SuSe system
(from an old
system 11.x to 13.x), the libcrypt.so.1 tool could not be used any more.
Copying an
old version (of an old SuSe system) to the freesurfer/lib folder, linking
it and adding
the folder to the LD_LIBRARY_PATH worked out...

I think the problem should be pointed out in the installation
instructions. The error
message (I am not a sys admin...) that the license file is not valid was
very misleading.


Best wishes,
Philipp




I am stuck with a license error in that freesurfer (after a simple
recon-all call for segmentation) continues to interrupt the process soon
after starting it, see complete copy of the error log file below.

I have freshly installed Freesurfer FROM SCRATCH and applied for a new
licence file which lies at the appropriate location.

What does "INVALID LICENSE FILE" actually indicate, how can the file be
invalid?

What can be done and why does the programm run absolutely smoothly on
another Linux-64-bit system??

vG Philipp



Sat Aug 30 17:17:48 CEST 2014
/net/PE1/raid1/enigma-mdd/data/WG_989
/net/PE1/raid1/enigma-mdd/freesurfer/bin/recon-all
-subjid WG_989 -all -hippo-subfields
subjid WG_989
setenv SUBJECTS_DIR /net/PE1/raid1/enigma-mdd/data
FREESURFER_HOME /net/PE1/raid1/enigma-mdd/freesurfer
Actual FREESURFER_HOME /net/PE1/raid1/enigma-mdd/freesurfer
build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 Linux
PE3 3.11.6-4-desktop #1 SMP PREEMPT Wed Oct 30 18:04:56 UTC 2013 (e6d4a27)
x86_64 x86_64 x86_64 GNU/Linux
cputime  unlimited
filesize unlimited
datasize unlimited
stacksize8192 kbytes
coredumpsize 0 kbytes
memoryuseunlimited
vmemoryuse   unlimited
descriptors  1024
memorylocked 64 kbytes
maxproc  2066987
maxlocks unlimited
maxsignal2066987
maxmessage   819200
maxnice  0
maxrtprio0
maxrttimeunlimited

 total   used   free sharedbuffers cached
Mem: 264665936  2631341841531752  0 194912  255250340
-/+ buffers/cache:7688932  256977004
Swap: 209728204929156   16043664


program versions used
$Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $
$Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $
mri_convert -all-info
ProgramName: mri_convert  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2014/08/30-15:17:48-GMT  BuildTimeStamp: May
13 2013 16:24:28  CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16
mreuter Exp $  User: nmr  Machine: PE3  Platform: Linux  PlatformVersion:
3.11.6-4-desktop  CompilerName: GCC  CompilerVersion: 40400
FLIRT version 5.5
$Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $
mri_convert --version
stable5
ProgramName: tkregister2_cmdl  ProgramArguments: --all-info
ProgramVersion: $Name: stable5 $  TimeStamp: 2014/08/30-15:17:49-GMT 
BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: tkregister2.c,v 1.121.2.1
2011/03/28 20:25:16 greve Exp $  User: nmr  Machine: PE3  Platform: Linux 
PlatformVersion: 3.11.6-4-desktop  CompilerName: GCC  CompilerVersion:
40400
Program nu_correct, built from:
Package MNI N3, version 1.10, compiled by nicks@minerva
(x86_64-unknown-linux-gnu) on 2010-02-20 at 17:32:37
ProgramName: mri_make_uchar  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2014/08/30-15:17:49-GMT  BuildTimeStamp: May
13 2013 16:24:28  CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14
nicks Exp $  User: nmr  Machine: PE3  Platform: Linux  PlatformVersion:
3.11.6-4-desktop  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_normalize  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2014/08/30-15:17:49-GMT  BuildTimeStamp: May
13 2013 16:24:28  CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32
nicks Exp $  User: nmr  Machine: PE3  Platform: Linux  PlatformVersion:
3.11.6-4-desktop  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_watershed  ProgramArguments: -all-info  ProgramVersion:
$Name: stable5 $  TimeStamp: 2014/08/30-15:17:49-GMT  BuildTimeStamp: May
13 2013 16:24:28  CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08
22:18:44 nicks Exp $  User: nmr  Machine: PE3  Platform: Linux
PlatformVersion: 3.11.6-4-desktop  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_gcut  ProgramArguments: -all-info  ProgramVersion: $Name:
stable5 $  TimeStamp: 2014/08/30-15:17:49-GMT  BuildTimeStamp: May 13 2013
16:24:28  CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ 
User: nmr  Machine: PE3  Platform: Linux  PlatformVersion:
3.11.6-4-desktop  CompilerName: GCC  CompilerVers

Re: [Freesurfer] license file not working

[Douglas N Greve]

Hi Philipp, is this still a problem? If so, can you send me your license 
file. I've gone off-list because I don't want the license files posted 
to the list.
doug

On 08/01/2014 04:22 PM, Saemann Philipp wrote:
> Hello Douglas,
>
> the file created on Linux, no Windows involved, and was 100% identical
> to the old license file that was successfully used for some time.
>
> Do I need a new download?
>
> Thanks,
> Philipp
>
> At 16:14 01.08.2014 -0400, you wrote:
>> not sure what is going wrong. How did you create the file? Make sure it
>> is a simple ascii text file not created under Windows
>>
>>
>> On 08/01/2014 04:10 PM, Saemann Philipp wrote:
>>> Hello users or support team,
>>>
>>> after using FS successfully for some time, now, after
>>> a trivial command such as
>>>
>>> mri_convert -it analyze T1.img -ot mgz 001.mgz
>>>
>>> an error appears as follows:
>>>
>>> $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
>>> reading from T1.img...
>>> --
>>> ERROR: Invalid FreeSurfer license key found in license file
>>> /net/PE1/raid1/enigma-mdd/freesurfer/.license
>>> If you are outside the NMR-Martinos Center,
>>> go to http://surfer.nmr.mgh.harvard.edu to
>>> get a valid license file (it's free).
>>> If you are inside the NMR-Martinos Center,
>>> make sure to source the standard environment.
>>> --
>>>
>>> I re-applied for a license file which was the EXACT one I already had at
>>> the specified location, and it still does produce the error message.
>>>
>>> What makes this licence "invalid" here? Is there some problem with
>>> C-compiler versions? (though I would not this should appear right now)
>>>
>>> Thanks for any ideas,
>>> Philipp Saemann
>>>
>>> Facharzt für Nervenheilkunde
>>> Arbeitsgruppe Neuroimaging
>>> Max-Planck-Institut für Psychiatrie
>>> Kraepelinstr. 2-10
>>> 80804 Munich
>>> Mail: saem...@mpipsykl.mpg.de
>>> Phone: 0049-89-30622-413
>>>
>>>
>>> ___
>>> Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>
>>>
>> -- 
>> Douglas N. Greve, Ph.D.
>> MGH-NMR Center
>> gr...@nmr.mgh.harvard.edu
>> Phone Number: 617-724-2358
>> Fax: 617-726-7422
>>
>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>>
>> ___
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>> The information in this e-mail is intended only for the person to whom it is
>> addressed. If you believe this e-mail was sent to you in error and the e-mail
>> contains patient information, please contact the Partners Compliance
> HelpLine at
>> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
>> but does not contain patient information, please contact the sender and
> properly
>> dispose of the e-mail.
>>
>>
>>
> Facharzt für Nervenheilkunde
> Arbeitsgruppe Neuroimaging
> Max-Planck-Institut für Psychiatrie
> Kraepelinstr. 2-10
> 80804 Munich
> Mail: saem...@mpipsykl.mpg.de
> Phone: 0049-89-30622-413
>
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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Re: [Freesurfer] license file not working

[Bruce Fischl]

what version of Linux are you using?
On Fri, 1 Aug 2014, Saemann Philipp 
wrote:



Hello Douglas,

the file created on Linux, no Windows involved, and was 100% identical
to the old license file that was successfully used for some time.

Do I need a new download?

Thanks,
Philipp

At 16:14 01.08.2014 -0400, you wrote:


not sure what is going wrong. How did you create the file? Make sure it
is a simple ascii text file not created under Windows


On 08/01/2014 04:10 PM, Saemann Philipp wrote:

Hello users or support team,

after using FS successfully for some time, now, after
a trivial command such as

mri_convert -it analyze T1.img -ot mgz 001.mgz

an error appears as follows:

$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from T1.img...
--
ERROR: Invalid FreeSurfer license key found in license file
/net/PE1/raid1/enigma-mdd/freesurfer/.license
   If you are outside the NMR-Martinos Center,
   go to http://surfer.nmr.mgh.harvard.edu to
   get a valid license file (it's free).
   If you are inside the NMR-Martinos Center,
   make sure to source the standard environment.
--

I re-applied for a license file which was the EXACT one I already had at
the specified location, and it still does produce the error message.

What makes this licence "invalid" here? Is there some problem with
C-compiler versions? (though I would not this should appear right now)

Thanks for any ideas,
Philipp Saemann

Facharzt für Nervenheilkunde
Arbeitsgruppe Neuroimaging
Max-Planck-Institut für Psychiatrie
Kraepelinstr. 2-10
80804 Munich
Mail: saem...@mpipsykl.mpg.de
Phone: 0049-89-30622-413


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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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contains patient information, please contact the Partners Compliance

HelpLine at

http://www.partners.org/complianceline . If the e-mail was sent to you in

error

but does not contain patient information, please contact the sender and

properly

dispose of the e-mail.




Facharzt für Nervenheilkunde
Arbeitsgruppe Neuroimaging
Max-Planck-Institut für Psychiatrie
Kraepelinstr. 2-10
80804 Munich
Mail: saem...@mpipsykl.mpg.de
Phone: 0049-89-30622-413


___
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https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


___
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https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] license file not working

[Saemann Philipp]

Hello Douglas,

the file created on Linux, no Windows involved, and was 100% identical
to the old license file that was successfully used for some time.

Do I need a new download?

Thanks,
Philipp

At 16:14 01.08.2014 -0400, you wrote:
>
>not sure what is going wrong. How did you create the file? Make sure it 
>is a simple ascii text file not created under Windows
>
>
>On 08/01/2014 04:10 PM, Saemann Philipp wrote:
>> Hello users or support team,
>>
>> after using FS successfully for some time, now, after
>> a trivial command such as
>>
>> mri_convert -it analyze T1.img -ot mgz 001.mgz
>>
>> an error appears as follows:
>>
>> $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
>> reading from T1.img...
>> --
>> ERROR: Invalid FreeSurfer license key found in license file
>> /net/PE1/raid1/enigma-mdd/freesurfer/.license
>>If you are outside the NMR-Martinos Center,
>>go to http://surfer.nmr.mgh.harvard.edu to
>>get a valid license file (it's free).
>>If you are inside the NMR-Martinos Center,
>>make sure to source the standard environment.
>> --
>>
>> I re-applied for a license file which was the EXACT one I already had at
>> the specified location, and it still does produce the error message.
>>
>> What makes this licence "invalid" here? Is there some problem with
>> C-compiler versions? (though I would not this should appear right now)
>>
>> Thanks for any ideas,
>> Philipp Saemann
>>
>> Facharzt für Nervenheilkunde
>> Arbeitsgruppe Neuroimaging
>> Max-Planck-Institut für Psychiatrie
>> Kraepelinstr. 2-10
>> 80804 Munich
>> Mail: saem...@mpipsykl.mpg.de
>> Phone: 0049-89-30622-413
>>
>>
>> ___
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>
>-- 
>Douglas N. Greve, Ph.D.
>MGH-NMR Center
>gr...@nmr.mgh.harvard.edu
>Phone Number: 617-724-2358
>Fax: 617-726-7422
>
>Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>
>___
>Freesurfer mailing list
>Freesurfer@nmr.mgh.harvard.edu
>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>The information in this e-mail is intended only for the person to whom it is
>addressed. If you believe this e-mail was sent to you in error and the e-mail
>contains patient information, please contact the Partners Compliance
HelpLine at
>http://www.partners.org/complianceline . If the e-mail was sent to you in
error
>but does not contain patient information, please contact the sender and
properly
>dispose of the e-mail.
>
>
>
Facharzt für Nervenheilkunde
Arbeitsgruppe Neuroimaging
Max-Planck-Institut für Psychiatrie
Kraepelinstr. 2-10
80804 Munich
Mail: saem...@mpipsykl.mpg.de
Phone: 0049-89-30622-413


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Re: [Freesurfer] license file not working

[Douglas N Greve]

not sure what is going wrong. How did you create the file? Make sure it 
is a simple ascii text file not created under Windows


On 08/01/2014 04:10 PM, Saemann Philipp wrote:
> Hello users or support team,
>
> after using FS successfully for some time, now, after
> a trivial command such as
>
> mri_convert -it analyze T1.img -ot mgz 001.mgz
>
> an error appears as follows:
>
> $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
> reading from T1.img...
> --
> ERROR: Invalid FreeSurfer license key found in license file
> /net/PE1/raid1/enigma-mdd/freesurfer/.license
>If you are outside the NMR-Martinos Center,
>go to http://surfer.nmr.mgh.harvard.edu to
>get a valid license file (it's free).
>If you are inside the NMR-Martinos Center,
>make sure to source the standard environment.
> --
>
> I re-applied for a license file which was the EXACT one I already had at
> the specified location, and it still does produce the error message.
>
> What makes this licence "invalid" here? Is there some problem with
> C-compiler versions? (though I would not this should appear right now)
>
> Thanks for any ideas,
> Philipp Saemann
>
> Facharzt für Nervenheilkunde
> Arbeitsgruppe Neuroimaging
> Max-Planck-Institut für Psychiatrie
> Kraepelinstr. 2-10
> 80804 Munich
> Mail: saem...@mpipsykl.mpg.de
> Phone: 0049-89-30622-413
>
>
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>

-- 
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MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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[Freesurfer] license file not working

[Saemann Philipp]

Hello users or support team,

after using FS successfully for some time, now, after
a trivial command such as 

mri_convert -it analyze T1.img -ot mgz 001.mgz

an error appears as follows:

$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from T1.img...
--
ERROR: Invalid FreeSurfer license key found in license file
/net/PE1/raid1/enigma-mdd/freesurfer/.license
  If you are outside the NMR-Martinos Center,
  go to http://surfer.nmr.mgh.harvard.edu to
  get a valid license file (it's free).
  If you are inside the NMR-Martinos Center,
  make sure to source the standard environment.
--

I re-applied for a license file which was the EXACT one I already had at
the specified location, and it still does produce the error message.

What makes this licence "invalid" here? Is there some problem with 
C-compiler versions? (though I would not this should appear right now)

Thanks for any ideas,
Philipp Saemann

Facharzt für Nervenheilkunde
Arbeitsgruppe Neuroimaging
Max-Planck-Institut für Psychiatrie
Kraepelinstr. 2-10
80804 Munich
Mail: saem...@mpipsykl.mpg.de
Phone: 0049-89-30622-413


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Re: [Freesurfer] .license file

[Pedro Paulo de Magalhães Oliveira Junior]

If FreeSurfer on Mac has been installed on /Applications you may need to
type

sudo cat > $FREESURFER_HOME/.license

and enter your account password when asked
-
Pedro Paulo de Magalhães Oliveira Junior
Netfilter & SpeedComm Telecom
-- www.netfilter.com.br
-- For mobile: http://itunes.apple.com/br/artist/netfilter/id365306441




On Mon, Jun 18, 2012 at 10:57 AM, Paul Raines wrote:

>
> I am assuming you are on a OSX box which has that stupid protection.
>
> Just open a Terminal and run
>
>   cat > $FREESURFER_HOME/.license
>
> then type in the 3 lines and Enter and then do a Control-D to exit
>
> -- Paul Raines 
> (http://help.nmr.mgh.harvard.**edu
> )
>
>
>
> On Sun, 17 Jun 2012 1:45am, Monica Giraldo wrote:
>
>  Hello, I created a file with this data, but when I'm going to save it as
>> .license doesnt let me because a message appears and says that files
>> starting with . are of the system and that i have to choose another name.
>> What can I do? Thanks.
>>
>> Mónica Giraldo Chica
>> PhD. Candidate Biomedicine
>> Sherman Health Science Research Centre
>> www.monicagiraldochica.com
>> __**_
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfer
>>
>>
>>
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> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
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> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>
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Re: [Freesurfer] .license file

[Paul Raines]

I am assuming you are on a OSX box which has that stupid protection.

Just open a Terminal and run

   cat > $FREESURFER_HOME/.license

then type in the 3 lines and Enter and then do a Control-D to exit

-- Paul Raines (http://help.nmr.mgh.harvard.edu)



On Sun, 17 Jun 2012 1:45am, Monica Giraldo wrote:


Hello, I created a file with this data, but when I'm going to save it as 
.license doesnt let me because a message appears and says that files starting 
with . are of the system and that i have to choose another name. What can I do? 
Thanks.

Mónica Giraldo Chica
PhD. Candidate Biomedicine
Sherman Health Science Research Centre
www.monicagiraldochica.com
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[Freesurfer] .license file

[Monica Giraldo]

Hello, I created a file with this data, but when I'm going to save it as 
.license doesnt let me because a message appears and says that files starting 
with . are of the system and that i have to choose another name. What can I do? 
Thanks.

Mónica Giraldo Chica
PhD. Candidate Biomedicine
Sherman Health Science Research Centre
www.monicagiraldochica.com
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Re: [Freesurfer] freesurfer license file

[dgw]

https://surfer.nmr.mgh.harvard.edu/registration.html

On Sun, Feb 19, 2012 at 4:55 PM, Christopher Bell
 wrote:
> How do I obtain a freesurfer license file?
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
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> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
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[Freesurfer] freesurfer license file

[Christopher Bell]

How do I obtain a freesurfer license file?
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Re: [Freesurfer] license file

[Bruce Fischl]

Hi Matt,

no, you don't need a new license. The old one should work fine.

cheers
Bruce
On Sat, 6 
Aug 2011, Hoptman, Matthew wrote:




Hi,

I just registered my new installation of Freesurfer 5.1, but I?ve used 5.0
and 4.5 in the past.  Can I just copy the ?.license? file from the prior
installation?  My impression is I needed a new .license file for v. 5.1, but
I haven?t received it despite registering.

--Matt


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[Freesurfer] license file

[Hoptman, Matthew]

Hi,

I just registered my new installation of Freesurfer 5.1, but I've used
5.0 and 4.5 in the past.  Can I just copy the ".license" file from the
prior installation?  My impression is I needed a new .license file for
v. 5.1, but I haven't received it despite registering.

--Matt



Conserve Resources. Print only when necessary.

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recipient. It may contain confidential information which is legally 
privilegedor otherwise protected by law. If you received this e-mail in error 
or from someone who is not authorized to send it to you, you are strictly 
prohibited from reviewing, using, disseminating, distributing or copying the 
e-mail. PLEASE NOTIFY US IMMEDIATELY OF THE ERROR BY RETURN E-MAIL AND DELETE 
THIS MESSAGE FROM YOUR SYSTEM. Thank you for your cooperation.
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Re: [Freesurfer] .license file on Mac (Krish Subramaniam)

[sere f]

Hi Krish,
>
thank you for your advicenow it works!!!
Serena.

>
>
>
>
>
>
>
> --
>
> Message: 7
> Date: Mon, 2 Aug 2010 03:16:09 -0400
> From: Krish Subramaniam 
> Subject: Re: [Freesurfer] .license file on Mac
> To: sere f 
> Cc: freesurfer@nmr.mgh.harvard.edu
> Message-ID: <2b627f31-d101-430f-b236-0ee5aacd5...@nmr.mgh.harvard.edu>
> Content-Type: text/plain; charset=US-ASCII; format=flowed; delsp=yes
>
> Hi Serena
>
> It means you don't have write permissions in the directory. You should
> invoke pico like
>
> sudo pico /Applications/freesurfer/.license
>
> ..it'll ask for your password and save successfully, provided you have
> permissions.
>
> -Krish
>
> On Aug 1, 2010, at 8:32 AM, sere f wrote:
>
> >
> >
> > Hi All,
> >
> > I am new user of Freesurfer and i am getting trouble to install it.
> > I want to install it on MacBook Pro and I have problem with the
> > license file.
> > I have tried to create it with:
> >
> > pico /Applications/freesurfer/.license
> >
> > and when I save it, I get this message:
> > Error writing /Applications/freesurfer/.license: Permission denied
> > and it is not saved.
> >
> > How can i do? any idea?
> > Thanks.
> >
> > Serena.
> >
> > ___
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> > Freesurfer@nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
> --
>
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>
> End of Freesurfer Digest, Vol 78, Issue 1
> *
>
>
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> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
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> properly
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>
>
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Re: [Freesurfer] .license file on Mac

[Krish Subramaniam]

Hi Serena

It means you don't have write permissions in the directory. You should  
invoke pico like

sudo pico /Applications/freesurfer/.license

..it'll ask for your password and save successfully, provided you have  
permissions.

-Krish

On Aug 1, 2010, at 8:32 AM, sere f wrote:

>
>
> Hi All,
>
> I am new user of Freesurfer and i am getting trouble to install it.
> I want to install it on MacBook Pro and I have problem with the  
> license file.
> I have tried to create it with:
>
> pico /Applications/freesurfer/.license
>
> and when I save it, I get this message:
> Error writing /Applications/freesurfer/.license: Permission denied
> and it is not saved.
>
> How can i do? any idea?
> Thanks.
>
> Serena.
>
> ___
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> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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[Freesurfer] .license file on Mac

[sere f]

Hi All,

I am new user of Freesurfer and i am getting trouble to install it.
I want to install it on MacBook Pro and I have problem with the license
file.
I have tried to create it with:

pico /Applications/freesurfer/.license

and when I save it, I get this message:
Error writing /Applications/freesurfer/.license: Permission denied
and it is not saved.

How can i do? any idea?
Thanks.

Serena.
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Re: [Freesurfer] license file for FS upgrades

[Bruce Fischl]

new, you shouldn't have to. What error are you having? We had some trouble 
with tiger.


On Sat, 15 
Mar 2008, Mischka Gerken wrote:


Hello, I am trying to upgrade my FreeSurfer from 4.0.1 to 4.0.2 in order to 
trouble shoot some qdec issues. I am having difficulty getting freesurfer to 
recognize my .license file. Does one need to get a new liscence when 
upgrading versions?


I am running Mac OS tiger on a PowerPC.

-Mischka.
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[Freesurfer] license file for FS upgrades

[Mischka Gerken]

Hello, I am trying to upgrade my FreeSurfer from 4.0.1 to 4.0.2 in  
order to trouble shoot some qdec issues. I am having difficulty  
getting freesurfer to recognize my .license file. Does one need to  
get a new liscence when upgrading versions?


I am running Mac OS tiger on a PowerPC.

-Mischka.
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[Freesurfer] '.license' file

[Henrique Fernandes]

The installation was successful!

I have created the file in 'pico', as Nick Schmansky told me to do,  
and fortunately the file '.license' was successfully created.


Thank you all for your kind attention,

Regards,

Henrique Fernandes

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Re: [Freesurfer] ".license" file

[Avram Holmes]

Henrique

You should call the file ".license". Then it will work. The file will be
invisible to your in unix unless you search for it with "ls -a".

Avram


Avram Holmes
Department of Psychology
Harvard University
1210 William James Hall  Phone:(617) 495-0790
33 Kirkland Street   Fax:(617) 495-3728
Cambridge, MA 02138, USA Email: [EMAIL PROTECTED]





Quoting Henrique Fernandes <[EMAIL PROTECTED]>:

> Thanks for the suggestions,
>
>
> I'm now having another problem. I created a .license file with the
> information about my license. Although, to keep the file stored I must
> have a name for it other else the system won't allow me to create that
> file. So, after giving a random name to the file, during the test for
> installation I received an error message like the one above:
>
> ----------
> ERROR: FreeSurfer license file /Applications/freesurfer/.license not
> found.
>If you are outside the NMR-Martinos Center,
>go to http://surfer.nmr.mgh.harvard.edu to
>get a valid license file (it's free).
>If you are inside the NMR-Martinos Center,
>make sure to source the standard environment.
> --
>
> How should I create the file .license? Any suggestions?
>
>
> Thanks in advance fot he help,
>
>
> Regards
>
>
> Henrique Fernandes
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Re: [Freesurfer] ".license" file

[Nick Schmansky]

Try using pico to create the file, like this:

  pico $FREESURFER_HOME/.license

(paste three lines of license file and press Ctrl-X to save).


On Tue, 2008-02-19 at 14:52 +, Henrique Fernandes wrote:
> Thanks for the suggestions,
> 
> 
> I'm now having another problem. I created a .license file with the  
> information about my license. Although, to keep the file stored I must  
> have a name for it other else the system won't allow me to create that  
> file. So, after giving a random name to the file, during the test for  
> installation I received an error message like the one above:
> 
> ----------
> ERROR: FreeSurfer license file /Applications/freesurfer/.license not  
> found.
>If you are outside the NMR-Martinos Center,
>go to http://surfer.nmr.mgh.harvard.edu to
>get a valid license file (it's free).
>If you are inside the NMR-Martinos Center,
>make sure to source the standard environment.
> --
> 
> How should I create the file .license? Any suggestions?
> 
> 
> Thanks in advance fot he help,
> 
> 
> Regards
> 
> 
> Henrique Fernandes
> ___
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> 
> 

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[Freesurfer] ".license" file

[Henrique Fernandes]

Thanks for the suggestions,


I'm now having another problem. I created a .license file with the  
information about my license. Although, to keep the file stored I must  
have a name for it other else the system won't allow me to create that  
file. So, after giving a random name to the file, during the test for  
installation I received an error message like the one above:


--
ERROR: FreeSurfer license file /Applications/freesurfer/.license not  
found.

  If you are outside the NMR-Martinos Center,
  go to http://surfer.nmr.mgh.harvard.edu to
  get a valid license file (it's free).
  If you are inside the NMR-Martinos Center,
  make sure to source the standard environment.
--

How should I create the file .license? Any suggestions?


Thanks in advance fot he help,


Regards


Henrique Fernandes
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Re: [Freesurfer] license file

[Nick Schmansky]

Frederick,

Please follow this link to register:

https://surfer.nmr.mgh.harvard.edu/registration.html

I've fixed to wiki page to point to this one.  I'm not sure why the
'http' link recently is failing, but in any case, you should be able to
get a key now.  Sorry for the trouble.

Nick


On Thu, 2006-08-31 at 11:59 -0700, Frederick Klauschen wrote:
> Hi,
> 
> I have difficulties registering and obtaining a
> license file.
> On the page:
> https://surfer.nmr.mgh.harvard.edu/fswiki/Registration
> clicking on the link:
> "Follow this link to obtain a license key" 
> http://surfer.nmr.mgh.harvard.edu:631/printersregistration.html
> 
> gives me an access denied message.
> 
> Frederick
> 
> 
> __
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> Tired of spam?  Yahoo! Mail has the best spam protection around 
> http://mail.yahoo.com 
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> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> 
> 

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[Freesurfer] license file

[Frederick Klauschen]

Hi,

I have difficulties registering and obtaining a
license file.
On the page:
https://surfer.nmr.mgh.harvard.edu/fswiki/Registration
clicking on the link:
"Follow this link to obtain a license key" 
http://surfer.nmr.mgh.harvard.edu:631/printersregistration.html

gives me an access denied message.

Frederick


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