Re: [Freesurfer] Amygdala subfields segmentation
External Email - Use Caution ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev Sent from my phone, please excuse brevity and typos From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Miguel Ángel Rivas Fernández Sent: Tuesday, September 11, 2018 5:59:48 PM To: Freesurfer support list Subject: Re: [Freesurfer] Amygdala subfields segmentation External Email - Use Caution Hi Eugenio, Where can I find the link for download the latest dev version? The latest version is this?: freesurfer-darwin-OSX-ElCapitan-dev.tar.gz Thanks in advance, Best, El mar., 11 sept. 2018 a las 17:47, Iglesias Gonzalez, Eugenio (mailto:e.igles...@ucl.ac.uk>>) escribió: External Email - Use Caution Dear MA Please download the latest dev version and the command will be there Cheers Eugenio Sent from my phone, please excuse brevity and typos From: freesurfer-boun...@nmr.mgh.harvard.edu<mailto:freesurfer-boun...@nmr.mgh.harvard.edu> mailto:freesurfer-boun...@nmr.mgh.harvard.edu>> on behalf of Miguel Ángel Rivas Fernández mailto:miguelrivasf...@gmail.com>> Sent: Tuesday, September 11, 2018 12:20:55 PM To: Freesurfer support list Subject: [Freesurfer] Amygdala subfields segmentation External Email - Use Caution Hi Freesurfer developes, I am trying to execute the hippocampal and amygdala segmentation command " segmentHA_T2.sh bert FILE_ADDITIONAL_SCAN ANALYSIS_ID USE_T1 [SUBJECTS_DIR]" but freesurfer gave to me this error command not found. However, when I use the command that segment only the hippocampal subfields (recon-all -s -hippocampal-subfields-T2 ) I don´t have any problem. What would be the reason? Thanks in advance. Best, -- Miguel Ángel Rivas Fernández ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Miguel Ángel Rivas Fernández ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Amygdala subfields segmentation
External Email - Use Caution Hi Eugenio, Where can I find the link for download the latest dev version? The latest version is this?: *freesurfer-darwin-OSX-ElCapitan-dev.tar.gz* Thanks in advance, Best, El mar., 11 sept. 2018 a las 17:47, Iglesias Gonzalez, Eugenio (< e.igles...@ucl.ac.uk>) escribió: > External Email - Use Caution > > Dear MA > Please download the latest dev version and the command will be there > Cheers > Eugenio > > Sent from my phone, please excuse brevity and typos > > -- > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Miguel Ángel Rivas > Fernández > *Sent:* Tuesday, September 11, 2018 12:20:55 PM > *To:* Freesurfer support list > *Subject:* [Freesurfer] Amygdala subfields segmentation > > > External Email - Use Caution > > > Hi Freesurfer developes, > > I am trying to execute the hippocampal and amygdala segmentation command " > segmentHA_T2.sh bert FILE_ADDITIONAL_SCAN ANALYSIS_ID USE_T1 > [SUBJECTS_DIR]" but freesurfer gave to me this error > *command not found. * > > > However, when I use the command that segment only the hippocampal > subfields (recon-all -s -hippocampal-subfields-T2 of additional scan> ) I don´t have any problem. > > > What would be the reason? > > > Thanks in advance. > > > Best, > > -- > *Miguel Ángel Rivas Fernández* > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > -- *Miguel Ángel Rivas Fernández* ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Amygdala subfields segmentation
External Email - Use Caution Dear MA Please download the latest dev version and the command will be there Cheers Eugenio Sent from my phone, please excuse brevity and typos From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Miguel Ángel Rivas Fernández Sent: Tuesday, September 11, 2018 12:20:55 PM To: Freesurfer support list Subject: [Freesurfer] Amygdala subfields segmentation External Email - Use Caution Hi Freesurfer developes, I am trying to execute the hippocampal and amygdala segmentation command " segmentHA_T2.sh bert FILE_ADDITIONAL_SCAN ANALYSIS_ID USE_T1 [SUBJECTS_DIR]" but freesurfer gave to me this error command not found. However, when I use the command that segment only the hippocampal subfields (recon-all -s -hippocampal-subfields-T2 ) I don´t have any problem. What would be the reason? Thanks in advance. Best, -- Miguel Ángel Rivas Fernández ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] Amygdala subfields segmentation
External Email - Use Caution Hi Freesurfer developes, I am trying to execute the hippocampal and amygdala segmentation command " segmentHA_T2.sh bert FILE_ADDITIONAL_SCAN ANALYSIS_ID USE_T1 [SUBJECTS_DIR]" but freesurfer gave to me this error *command not found. * However, when I use the command that segment only the hippocampal subfields (recon-all -s -hippocampal-subfields-T2 ) I don´t have any problem. What would be the reason? Thanks in advance. Best, -- *Miguel Ángel Rivas Fernández* ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
