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Dear MA
Please download the latest dev version and the command will be there
Cheers
Eugenio
Sent from my phone, please excuse brevity and typos
________________________________
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Miguel Ángel Rivas
Fernández <miguelrivasf...@gmail.com>
Sent: Tuesday, September 11, 2018 12:20:55 PM
To: Freesurfer support list
Subject: [Freesurfer] Amygdala subfields segmentation
External Email - Use Caution
Hi Freesurfer developes,
I am trying to execute the hippocampal and amygdala segmentation command "
segmentHA_T2.sh bert FILE_ADDITIONAL_SCAN ANALYSIS_ID USE_T1 [SUBJECTS_DIR]"
but freesurfer gave to me this error command not found.
However, when I use the command that segment only the hippocampal subfields
(recon-all -s <subject_name> -hippocampal-subfields-T2 <file name of additional
scan> <analysisID>) I don´t have any problem.
What would be the reason?
Thanks in advance.
Best,
--
Miguel Ángel Rivas Fernández
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