Re: [Freesurfer] FSFAST (mkcontrast-sess) with Octave

2021-08-17 Thread Douglas N. Greve
Hi Lauri, I was able to run this successfully here on 7.2. What version 
of FS are you using? Can you send

/tmp/mkcontrast2.28236.m

(if still there)?
doug


On 8/17/2021 3:10 PM, Lauri Tuominen wrote:
>  External Email - Use Caution
>
> Dear Surfers,
> I am trying to run fsfast mkcontrast-sess with octave. I used the following 
> command:
>
> "mkcontrast-sess -analysis ../mkanalysis/ftap.sm05.lh  -contrast ftap -a 1 
> -octave"
>
> I get the output below. I wonder if you could help me out? Am I missing a 
> file or a path?
>
> Thank you so much
> Lauri Tuominen
>
>
> INFO: Found 2 Non-Null Conditions
> INFO: Found 1 Delays
> Condition Weights: 1. 0
> mkcontrast2 -config ../mkanalysis/ftap.sm05.lh/ftap.config -anadir 
> ../mkanalysis/ftap.sm05.lh -wcond 1. 0 -sumconds -o 
> ../mkanalysis/ftap.sm05.lh/ftap.mat -prestim 0 -wdelay 1 -octave
>mkcontrast2 7.1.1
> cmtxfile  ../mkanalysis/ftap.sm05.lh/ftap.mat
> nconds2,  wcond  1. 0
> ndelays   1, wdelay 1
> ndelays   1, wpsa
> sumconds  1
> sumdelays 0
> nircorr   0
> TER   0.05
> rdelta
> rtau
>cmtxfile  ../mkanalysis/ftap.sm05.lh/ftap.mat
>monly  0
>NCond   2
>WCond   1. 0
>NDelay  1
>WDelay  1
>TER 0.05
>sumconds   1
>sumdelays  0
>nircorr  0
>TPreStim  0
>RmPreStim  0
>rdelta 0 0
>rtau   0 0
>ndelays1
>CNorm  1
>setwdelay  0
>setwcond   0
> Matlab file is /tmp/mkcontrast2.28236.m
> --- octave output 
> error: 'mkcontrast2m' undefined near line 1, column 1
>
> Tue 17 Aug 2021 15:04:43 EDT
>
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[Freesurfer] FSFAST (mkcontrast-sess) with Octave

2021-08-17 Thread Lauri Tuominen
External Email - Use Caution

Dear Surfers,
I am trying to run fsfast mkcontrast-sess with octave. I used the following 
command: 

"mkcontrast-sess -analysis ../mkanalysis/ftap.sm05.lh  -contrast ftap -a 1 
-octave"

I get the output below. I wonder if you could help me out? Am I missing a file 
or a path? 

Thank you so much
Lauri Tuominen


INFO: Found 2 Non-Null Conditions
INFO: Found 1 Delays
Condition Weights: 1. 0
mkcontrast2 -config ../mkanalysis/ftap.sm05.lh/ftap.config -anadir 
../mkanalysis/ftap.sm05.lh -wcond 1. 0 -sumconds -o 
../mkanalysis/ftap.sm05.lh/ftap.mat -prestim 0 -wdelay 1 -octave
  mkcontrast2 7.1.1
cmtxfile  ../mkanalysis/ftap.sm05.lh/ftap.mat
nconds2,  wcond  1. 0
ndelays   1, wdelay 1
ndelays   1, wpsa   
sumconds  1
sumdelays 0
nircorr   0
TER   0.05
rdelta
rtau  
  cmtxfile  ../mkanalysis/ftap.sm05.lh/ftap.mat
  monly  0
  NCond   2
  WCond   1. 0
  NDelay  1
  WDelay  1
  TER 0.05
  sumconds   1
  sumdelays  0
  nircorr  0
  TPreStim  0
  RmPreStim  0
  rdelta 0 0
  rtau   0 0
  ndelays1
  CNorm  1
  setwdelay  0
  setwcond   0
Matlab file is /tmp/mkcontrast2.28236.m
--- octave output 
error: 'mkcontrast2m' undefined near line 1, column 1

Tue 17 Aug 2021 15:04:43 EDT

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