Hi Lauri, I was able to run this successfully here on 7.2. What version of FS are you using? Can you send
/tmp/mkcontrast2.28236.m (if still there)? doug On 8/17/2021 3:10 PM, Lauri Tuominen wrote: > External Email - Use Caution > > Dear Surfers, > I am trying to run fsfast mkcontrast-sess with octave. I used the following > command: > > "mkcontrast-sess -analysis ../mkanalysis/ftap.sm05.lh -contrast ftap -a 1 > -octave" > > I get the output below. I wonder if you could help me out? Am I missing a > file or a path? > > Thank you so much > Lauri Tuominen > > > INFO: Found 2 Non-Null Conditions > INFO: Found 1 Delays > Condition Weights: 1.00000000000000000000 0 > mkcontrast2 -config ../mkanalysis/ftap.sm05.lh/ftap.config -anadir > ../mkanalysis/ftap.sm05.lh -wcond 1.00000000000000000000 0 -sumconds -o > ../mkanalysis/ftap.sm05.lh/ftap.mat -prestim 0 -wdelay 1 -octave > mkcontrast2 7.1.1 > cmtxfile ../mkanalysis/ftap.sm05.lh/ftap.mat > nconds 2, wcond 1.00000000000000000000 0 > ndelays 1, wdelay 1 > ndelays 1, wpsa > sumconds 1 > sumdelays 0 > nircorr 0 > TER 0.050000 > rdelta > rtau > cmtxfile ../mkanalysis/ftap.sm05.lh/ftap.mat > monly 0 > NCond 2 > WCond 1.00000000000000000000 0 > NDelay 1 > WDelay 1 > TER 0.050000 > sumconds 1 > sumdelays 0 > nircorr 0 > TPreStim 0 > RmPreStim 0 > rdelta 0 0 > rtau 0 0 > ndelays 1 > CNorm 1 > setwdelay 0 > setwcond 0 > Matlab file is /tmp/mkcontrast2.28236.m > ------- octave output -------------------- > error: 'mkcontrast2m' undefined near line 1, column 1 > > Tue 17 Aug 2021 15:04:43 EDT > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://www.massgeneralbrigham.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
