You only need to make it once for mni305. The analysis is not lateralized.
doug
On 05/04/2015 05:19 PM, Alshikho, Mohamad J. wrote:
>
> Hi Doug,
>
> I wanted to run FSFAST without using the paradigm file in the analysis
> using the following command lines:
>
> 1.preproc-sess -s ${i} -fwhm 5 -surface fsaverage lhrh -mni305-1mm
> -fsd bold -per-run
>
> 2.fcseed-config -segid 1024 -fcname L_Precentralgyrus.dat -fsd bold
> -mean -cfg mean.L_Precentralgyrus.config
>
> fcseed-config -segid 2024 -fcname R_Precentralgyrus.dat -fsd bold
> -mean -cfg mean.R_Precentralgyrus.config
>
> 3.fcseed-sess -s ${i} -cfg mean.L_Precentralgyrus.config
>
> 4.fcseed-sess -s ${i} -cfg mean.R_Precentralgyrus.config
>
> 5.fcseed-config -wm -fcname wm.dat -fsd bold -pca -cfg wm.config
>
> fcseed-sess -s ${i} -cfg wm.config
>
> fcseed-config -vcsf -fcname vcsf.dat -fsd bold -pca -cfg vcsf.config
>
> fcseed-sess -s ${i} -cfg vcsf.config
>
> Now :
>
> I want to configure analysis for lh , rh , and mni305 using the
> following command lines:
>
> _For lh I used the command:_
>
> mkanalysis-sess -analysis precentralgyrus.lh -surface fsaverage lh
> -fwhm 5 -notask -taskreg L_Precentralgyrus.dat 1 -nuisreg vcsf.dat 13
> -nuisreg wm.dat 13 -mcextreg -polyfit 5 -nskip 4 -fsd bold -TR 2.01
> -per-run -force
>
> _For rh I used the command:_
>
> mkanalysis-sess -analysis precentralgyrus.rh -surface fsaverage rh
> -fwhm 5 -notask -taskreg R_Precentralgyrus.dat 1 -nuisreg vcsf.dat 13
> -nuisreg wm.dat 13 -mcextreg -polyfit 5 -nskip 4 -fsd bold -TR 2.01
> -per-run –force
>
> *_My Question is :_*
>
> how can I configure an analysis for mni305 without the paradigm file?
> Is it correct to make it twice for the right and left hemispheres?
>
> mkanalysis-sess -analysis precentralgyrus.305.lh –mni305 1 -fwhm 5
> -notask -taskreg L_Precentralgyrus.dat 1 -nuisreg vcsf.dat 13 -nuisreg
> wm.dat 13 -mcextreg -polyfit 5 -nskip 4 -fsd bold -TR 2.01 -per-run
> -force
>
> mkanalysis-sess -analysis precentralgyrus.305.rh –mni305 1 -fwhm 5
> -notask -taskreg R_Precentralgyrus.dat 1 -nuisreg vcsf.dat 13 -nuisreg
> wm.dat 13 -mcextreg -polyfit 5 -nskip 4 -fsd bold -TR 2.01 -per-run
> -force
>
> Thanks
>
> Mohamad__
>
>
>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
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