Hi Doug,
I wanted to run FSFAST without using the paradigm file in the analysis using
the following command lines:
1. preproc-sess -s ${i} -fwhm 5 -surface fsaverage lhrh -mni305-1mm -fsd
bold -per-run
2. fcseed-config -segid 1024 -fcname L_Precentralgyrus.dat -fsd bold -mean
-cfg mean.L_Precentralgyrus.config
fcseed-config -segid 2024 -fcname R_Precentralgyrus.dat -fsd bold -mean -cfg
mean.R_Precentralgyrus.config
3. fcseed-sess -s ${i} -cfg mean.L_Precentralgyrus.config
4. fcseed-sess -s ${i} -cfg mean.R_Precentralgyrus.config
5. fcseed-config -wm -fcname wm.dat -fsd bold -pca -cfg wm.config
fcseed-sess -s ${i} -cfg wm.config
fcseed-config -vcsf -fcname vcsf.dat -fsd bold -pca -cfg vcsf.config
fcseed-sess -s ${i} -cfg vcsf.config
Now :
I want to configure analysis for lh , rh , and mni305 using the following
command lines:
For lh I used the command:
mkanalysis-sess -analysis precentralgyrus.lh -surface fsaverage lh -fwhm 5
-notask -taskreg L_Precentralgyrus.dat 1 -nuisreg vcsf.dat 13 -nuisreg wm.dat
13 -mcextreg -polyfit 5 -nskip 4 -fsd bold -TR 2.01 -per-run -force
For rh I used the command:
mkanalysis-sess -analysis precentralgyrus.rh -surface fsaverage rh -fwhm 5
-notask -taskreg R_Precentralgyrus.dat 1 -nuisreg vcsf.dat 13 -nuisreg wm.dat
13 -mcextreg -polyfit 5 -nskip 4 -fsd bold -TR 2.01 -per-run -force
My Question is :
how can I configure an analysis for mni305 without the paradigm file? Is it
correct to make it twice for the right and left hemispheres?
mkanalysis-sess -analysis precentralgyrus.305.lh -mni305 1 -fwhm 5 -notask
-taskreg L_Precentralgyrus.dat 1 -nuisreg vcsf.dat 13 -nuisreg wm.dat 13
-mcextreg -polyfit 5 -nskip 4 -fsd bold -TR 2.01 -per-run -force
mkanalysis-sess -analysis precentralgyrus.305.rh -mni305 1 -fwhm 5 -notask
-taskreg R_Precentralgyrus.dat 1 -nuisreg vcsf.dat 13 -nuisreg wm.dat 13
-mcextreg -polyfit 5 -nskip 4 -fsd bold -TR 2.01 -per-run -force
Thanks
Mohamad
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