Re: [Freesurfer] Freesurfer: Re-run recon-all in older versions

2021-11-12 Thread Douglas N. Greve 
Oh, I think that should work, but no promises. Just re-run the v6 output 
in 5.3. Why are you going back to 5.3?


On 11/12/2021 10:45 AM, Miguel Ángel Rivas Fernández wrote:


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Hi Douglas,

I would going from freesurfer 6 to freesurfer 5.3, not from FS 5.3 to 
FS 6.



Best,

El vie., 12 nov. 2021 15:51, Douglas N. Greve  
escribió:


If you are going from 5.3 to 6, you should just be able to run
recon-all -all on the 5.3 folder and it should take into account
your previous edits (make a copy first though:)

On 11/12/2021 4:40 AM, Steve Petersen wrote:


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Dear all,

We conducted the recon-all and applied a quality control protocol
in several subjects using the FSurfer 6 version. Now, we would
like to run the recon-all again on an older version of FSurfer
(5.3 v) but considering the edits we made on those previous
recon-all. Is this possible?, and if so, what would be the command?

Thank you very much in advance.

Best regards,

Steve.

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Re: [Freesurfer] Freesurfer: Re-run recon-all in older versions

2021-11-12 Thread Miguel Ángel Rivas Fernández 
External Email - Use Caution

I am in the same situation as Steve. Is there a particular flag to rerun
subjects in freesurfer 5.3.


Best regards,

El vie., 12 nov. 2021 16:45, Miguel Ángel Rivas Fernández <
miguelrivasf...@gmail.com> escribió:

> Hi Douglas,
>
> I would going from freesurfer 6 to freesurfer 5.3, not from FS 5.3 to FS 6.
>
>
> Best,
>
> El vie., 12 nov. 2021 15:51, Douglas N. Greve 
> escribió:
>
>> If you are going from 5.3 to 6, you should just be able to run recon-all
>> -all on the 5.3 folder and it should take into account your previous edits
>> (make a copy first though:)
>>
>> On 11/12/2021 4:40 AM, Steve Petersen wrote:
>>
>> External Email - Use Caution
>> Dear all,
>>
>> We conducted the recon-all and applied a quality control protocol in
>> several subjects using the FSurfer 6 version. Now, we would like to run the
>> recon-all again on an older version of FSurfer (5.3 v) but considering the
>> edits we made on those previous recon-all. Is this possible?, and if so,
>> what would be the command?
>>
>> Thank you very much in advance.
>>
>> Best regards,
>>
>> Steve.
>>
>> ___
>> Freesurfer mailing 
>> listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>> ___
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Re: [Freesurfer] Freesurfer: Re-run recon-all in older versions

2021-11-12 Thread Miguel Ángel Rivas Fernández 
External Email - Use Caution

Hi Douglas,

I would going from freesurfer 6 to freesurfer 5.3, not from FS 5.3 to FS 6.


Best,

El vie., 12 nov. 2021 15:51, Douglas N. Greve 
escribió:

> If you are going from 5.3 to 6, you should just be able to run recon-all
> -all on the 5.3 folder and it should take into account your previous edits
> (make a copy first though:)
>
> On 11/12/2021 4:40 AM, Steve Petersen wrote:
>
> External Email - Use Caution
> Dear all,
>
> We conducted the recon-all and applied a quality control protocol in
> several subjects using the FSurfer 6 version. Now, we would like to run the
> recon-all again on an older version of FSurfer (5.3 v) but considering the
> edits we made on those previous recon-all. Is this possible?, and if so,
> what would be the command?
>
> Thank you very much in advance.
>
> Best regards,
>
> Steve.
>
> ___
> Freesurfer mailing 
> listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> ___
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> The information in this e-mail is intended only for the person to whom it
> is addressed. If you believe this e-mail was sent to you in error and the
> e-mail contains patient information, please contact the Mass General
> Brigham Compliance HelpLine at
> http://secure-web.cisco.com/1fWn93lUWOA0uXuAi-LRAomJY4zMi6OfnzcFLbgFB0QFT47eHzSexc9UXZ_15h46iUmWrdrzLAP2gzS0i4sctofRUz9eg-d15Ox7O3gkuKRxTDP7TCBpoOgprdldE79lf2pdKeFvX1SR6GNVzpZOFm955tpEd3G1Z_Oa4mxpgp34KW0BjUoBI3xucqS836DUoQyeHpfLSMrkRhc5CJbvhO6xhFn2I3AEt6IrnyyA4nmorMTEjPHVEDeNPc8ZYR1C3N4U17jDlKOQohEmmQWdoR_ZeGThjIQU4QQQ7OZOzK-rnB5uDqB44sLchFUoXQjLub8I-GqmYEUZhP-h3-TqY6Q/http%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline
>  . If the e-mail was sent
> to you in error but does not contain patient information, please contact
> the sender and properly dispose of the e-mail.
> Please note that this e-mail is not secure (encrypted).  If you do not
> wish to continue communication over unencrypted e-mail, please notify the
> sender of this message immediately.  Continuing to send or respond to
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> risk and wish to continue to communicate over unencrypted e-mail.
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Re: [Freesurfer] Freesurfer: Re-run recon-all in older versions

2021-11-12 Thread Douglas N. Greve 
If you are going from 5.3 to 6, you should just be able to run recon-all 
-all on the 5.3 folder and it should take into account your previous 
edits (make a copy first though:)


On 11/12/2021 4:40 AM, Steve Petersen wrote:


External Email - Use Caution

Dear all,

We conducted the recon-all and applied a quality control protocol in 
several subjects using the FSurfer 6 version. Now, we would like to 
run the recon-all again on an older version of FSurfer (5.3 v) but 
considering the edits we made on those previous recon-all. Is this 
possible?, and if so, what would be the command?


Thank you very much in advance.

Best regards,

Steve.

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The information in this e-mail is intended only for the person to whom it is 
addressed. If you believe this e-mail was sent to you in error and the e-mail 
contains patient information, please contact the Mass General Brigham 
Compliance HelpLine at http://www.massgeneralbrigham.org/complianceline . If 
the e-mail was sent to you in error but does not contain patient information, 
please contact the sender and properly dispose of the e-mail.
Please note that this e-mail is not secure (encrypted).  If you do not wish to 
continue communication over unencrypted e-mail, please notify the sender of 
this message immediately.  Continuing to send or respond to e-mail after 
receiving this message means you understand and accept this risk and wish to 
continue to communicate over unencrypted e-mail.

[Freesurfer] Freesurfer: Re-run recon-all in older versions

2021-11-12 Thread Steve Petersen 
External Email - Use Caution

Dear all,

We conducted the recon-all and applied a quality control protocol in
several subjects using the FSurfer 6 version. Now, we would like to run the
recon-all again on an older version of FSurfer (5.3 v) but considering the
edits we made on those previous recon-all. Is this possible?, and if so,
what would be the command?

Thank you very much in advance.

Best regards,

Steve.
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