Re: [Freesurfer] Fwd: [HCP-Users] HCP to FreeSurfer Resampling

2016-11-22 Thread Bruce Fischl 
Hi Tim

we need your full command line and screen output.

cheers
Bruce
On Tue, 22 Nov 2016, 
Timothy Hendrickson wrote:

> 
> Just following up on the message below.
> 
> Respectfully,
> 
> -Tim 
> 
> FreeSurfer experts,
> 
> I am attempting to resample HCP data into FreeSurfer space with the
> following how to document: https://wiki.humanconnectome.
> org/display/PublicData/HCP+Users+FAQ.
> 
> I believe I have resampled the GIFTI file into fs_average space, however I
> am running to problems visualizing it in freeview or tksurfer. Please see
> the error message in the forwarded message below?
> 
> -Tim
> 
> Timothy Hendrickson
> Department of Psychiatry
> University of Minnesota
> Mobile: 507-259-3434 (texts okay)
> 
> -- Forwarded message --
> From: Timothy Hendrickson 
> Date: Tue, Nov 8, 2016 at 8:51 AM
> Subject: Re: [HCP-Users] HCP to FreeSurfer Resampling
> To: Timothy Coalson 
> Cc: "hcp-us...@humanconnectome.org" 
> 
> 
> Hi Tim,
> 
> Thank you for taking a look at my script, I really appreciate it. I am now
> running into another problem. After re-sampling into fs_average space I am
> attempting to visualize that file as an overlay in tksurfer or freeview
> (freesurfer visualization tools) however I receive the following
> error: *mriseadGIFTIfile:
> mris is NULL! found when parsing file rh.43242.32k_TJH_fsavg.func.gii*. I
> know that freesurfer can handle GIFTI file so that is not the problem. I
> wonder if the GIFTI file was created incorrectly...
> 
> Any advice?
> 
> -Tim
> 
> 
> Timothy Hendrickson
> Department of Psychiatry
> University of Minnesota
> Mobile: 507-259-3434 (texts okay)
> 
> __
> Timothy Hendrickson
> Department of Psychiatry
> University of Minnesota
> Office: 612-624-6441
> Mobile: 507-259-3434 (texts okay)
> 
>
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[Freesurfer] Fwd: [HCP-Users] HCP to FreeSurfer Resampling

2016-11-22 Thread Timothy Hendrickson 
Just following up on the message below.

Respectfully,

-Tim



FreeSurfer experts,

I am attempting to resample HCP data into FreeSurfer space with the
following how to document: https://wiki.humanconnectome.
org/display/PublicData/HCP+Users+FAQ.

I believe I have resampled the GIFTI file into fs_average space, however I
am running to problems visualizing it in freeview or tksurfer. Please see
the error message in the forwarded message below?

-Tim

Timothy Hendrickson
Department of Psychiatry
University of Minnesota
Mobile: 507-259-3434 (texts okay)

-- Forwarded message --
From: Timothy Hendrickson 
Date: Tue, Nov 8, 2016 at 8:51 AM
Subject: Re: [HCP-Users] HCP to FreeSurfer Resampling
To: Timothy Coalson 
Cc: "hcp-us...@humanconnectome.org" 


Hi Tim,

Thank you for taking a look at my script, I really appreciate it. I am now
running into another problem. After re-sampling into fs_average space I am
attempting to visualize that file as an overlay in tksurfer or freeview
(freesurfer visualization tools) however I receive the following
error: *mriseadGIFTIfile:
mris is NULL! found when parsing file rh.43242.32k_TJH_fsavg.func.gii*. I
know that freesurfer can handle GIFTI file so that is not the problem. I
wonder if the GIFTI file was created incorrectly...

Any advice?

-Tim


Timothy Hendrickson
Department of Psychiatry
University of Minnesota
Mobile: 507-259-3434 (texts okay)

__

Timothy Hendrickson
Department of Psychiatry
University of Minnesota
Office: 612-624-6441
Mobile: 507-259-3434 (texts okay)
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

[Freesurfer] Fwd: [HCP-Users] HCP to FreeSurfer Resampling

2016-11-08 Thread Timothy Hendrickson 
FreeSurfer experts,

I am attempting to resample HCP data into FreeSurfer space with the
following how to document: https://wiki.humanconnectome.
org/display/PublicData/HCP+Users+FAQ.

I believe I have resampled the GIFTI file into fs_average space, however I
am running to problems visualizing it in freeview or tksurfer. Please see
the error message in the forwarded message below?

-Tim

Timothy Hendrickson
Department of Psychiatry
University of Minnesota
Mobile: 507-259-3434 (texts okay)

-- Forwarded message --
From: Timothy Hendrickson 
Date: Tue, Nov 8, 2016 at 8:51 AM
Subject: Re: [HCP-Users] HCP to FreeSurfer Resampling
To: Timothy Coalson 
Cc: "hcp-us...@humanconnectome.org" 


Hi Tim,

Thank you for taking a look at my script, I really appreciate it. I am now
running into another problem. After re-sampling into fs_average space I am
attempting to visualize that file as an overlay in tksurfer or freeview
(freesurfer visualization tools) however I receive the following
error: *mriseadGIFTIfile:
mris is NULL! found when parsing file rh.43242.32k_TJH_fsavg.func.gii*. I
know that freesurfer can handle GIFTI file so that is not the problem. I
wonder if the GIFTI file was created incorrectly...

Any advice?

-Tim


Timothy Hendrickson
Department of Psychiatry
University of Minnesota
Mobile: 507-259-3434 (texts okay)
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.