Hi Tim we need your full command line and screen output.
cheers Bruce On Tue, 22 Nov 2016, Timothy Hendrickson wrote: > > Just following up on the message below. > > Respectfully, > > -Tim > > FreeSurfer experts, > > I am attempting to resample HCP data into FreeSurfer space with the > following how to document: https://wiki.humanconnectome. > org/display/PublicData/HCP+Users+FAQ. > <https://wiki.humanconnectome.org/display/PublicData/HCP+Users+FAQ> > I believe I have resampled the GIFTI file into fs_average space, however I > am running to problems visualizing it in freeview or tksurfer. Please see > the error message in the forwarded message below? > > -Tim > > Timothy Hendrickson > Department of Psychiatry > University of Minnesota > Mobile: 507-259-3434 (texts okay) > > ---------- Forwarded message ---------- > From: Timothy Hendrickson <hendr...@umn.edu> > Date: Tue, Nov 8, 2016 at 8:51 AM > Subject: Re: [HCP-Users] HCP to FreeSurfer Resampling > To: Timothy Coalson <tsc...@mst.edu> > Cc: "hcp-us...@humanconnectome.org" <hcp-us...@humanconnectome.org> > > > Hi Tim, > > Thank you for taking a look at my script, I really appreciate it. I am now > running into another problem. After re-sampling into fs_average space I am > attempting to visualize that file as an overlay in tksurfer or freeview > (freesurfer visualization tools) however I receive the following > error: *mriseadGIFTIfile: > mris is NULL! found when parsing file rh.43242.32k_TJH_fsavg.func.gii*. I > know that freesurfer can handle GIFTI file so that is not the problem. I > wonder if the GIFTI file was created incorrectly... > > Any advice? > > -Tim > > > Timothy Hendrickson > Department of Psychiatry > University of Minnesota > Mobile: 507-259-3434 (texts okay) > > ______________________________________ > Timothy Hendrickson > Department of Psychiatry > University of Minnesota > Office: 612-624-6441 > Mobile: 507-259-3434 (texts okay) > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
