Hi Nasos
tkmedit has been deprecated for a few years. Can you try freeview?
cheers
Bruce
On Tue,
19 Apr 2016, Nasos Petridis wrote:
> Hello,
>
> Recently, I started using freesurfer on a Ubuntu system. I've noticed
> two issues, when using tkmedit, for example:
>
> tkmedit subj_name norm.mgz -segmentation aparc.a2009s+aseg.mgz
>
> (i) When I try to save TIFF (Tools > Save TIFF), a TIFF file is
> created, and it can be opened in any image viewing program but is
> black. It's worth noting that when I try to save a cortical thickness
> surface view as tiff, using tksurfer tools, it works fine.
>
> (ii) When I try to rotate the volume (Tools > Volume > Rotate Volume),
> I cannot enter an angle in the "Degrees" dialogue box, ie I type the
> number but no number appears neither doe the cursor move.
>
> I've tried both freesurfer 5.3 Linux distributions (centos4, centos6)
> with no difference. I'm running Ubuntu 14.04LTS.
>
> Do I need to install any packages in Ubuntu? Any suggestion how to
> tackle those two issues would be greatly appreciated.
>
> Many thanks,
>
> Nasos
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