Hi Nasos tkmedit has been deprecated for a few years. Can you try freeview?
cheers Bruce On Tue, 19 Apr 2016, Nasos Petridis wrote: > Hello, > > Recently, I started using freesurfer on a Ubuntu system. I've noticed > two issues, when using tkmedit, for example: > > tkmedit subj_name norm.mgz -segmentation aparc.a2009s+aseg.mgz > > (i) When I try to save TIFF (Tools > Save TIFF), a TIFF file is > created, and it can be opened in any image viewing program but is > black. It's worth noting that when I try to save a cortical thickness > surface view as tiff, using tksurfer tools, it works fine. > > (ii) When I try to rotate the volume (Tools > Volume > Rotate Volume), > I cannot enter an angle in the "Degrees" dialogue box, ie I type the > number but no number appears neither doe the cursor move. > > I've tried both freesurfer 5.3 Linux distributions (centos4, centos6) > with no difference. I'm running Ubuntu 14.04LTS. > > Do I need to install any packages in Ubuntu? Any suggestion how to > tackle those two issues would be greatly appreciated. > > Many thanks, > > Nasos > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.