Re: [Freesurfer] Help (Freeview fails to launch)

2023-12-29 Thread Kiyotaka Nemoto 
External Email - Use Caution

Dear R,

Thank you for the information. The deb package is useful so I agree with
you. Only one point is that using deb cannot handle installing two
different versions. Do you have any recommendation managing two (or more)
different versions using deb package?

Best regards,

Kiyotaka


On Sat, Dec 30, 2023 at 1:21 PM fsbuild  wrote:

> External Email - Use Caution
>
>
> Depending upon the state of a machine, there is no guarantee a list of
> "required" packages will encompass everything that needs to be
> installed/updated, or that a manual install will work.  So we neither
> recommend or support manual/piecemal installs, e.g., via the list below,
> instead of using the built-in linux package management tools.
>
> - R.
>
> On Dec 29, 2023, at 22:32, Kiyotaka Nemoto  wrote:
>
> External Email - Use Caution
>
> Dear Akira,
>
> I agree with R that installing FreeSurfer using the deb is preferred, but
> if you want to stick to tar.gz,
> below is the list of the packages to be installed when you install
> FreeSurfer using the deb package.
> So if you install these packages, you would be able to run freeview.
>
> Hope this helps,
>
> Kiyotaka
>
> sudo apt install -y language-pack-en binutils libx11-dev gettext x11-apps \
>   perl make csh tcsh bash file bc gzip tar \
>   xorg xorg-dev xserver-xorg-video-intel libncurses5 libbsd0 libc6 libc6 \
>   libcom-err2 libcrypt1 libdrm2 libegl1 libexpat1 libffi7 libfontconfig1 \
>   libfreetype6 libgcc-s1 libgl1 libglib2.0-0 libglu1-mesa libglvnd0
> libglx0 \
>   libgomp1 libgssapi-krb5-2 libice6 libjpeg62 libk5crypto3 libkeyutils1 \
>   libkrb5-3 libkrb5support0 libpcre3 libpng16-16 libquadmath0 libsm6 \
>   libstdc++6 libuuid1 libwayland-client0 libwayland-cursor0 libx11-6 \
>   libx11-xcb1 libxau6 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 \
>   libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 \
>   libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 \
>   libxcb-xinput0 libxcb-xkb1 libxcb1 libxdmcp6 libxext6 libxft2 libxi6 \
>   libxkbcommon-x11-0 libxkbcommon0 libxmu6 libxrender1 libxss1 libxt6
> zlib1g
>
> On Fri, Dec 29, 2023 at 12:14 PM fsbuild  wrote:
>
>> External Email - Use Caution
>>
>>
>> That message could be the result of missing system libraries which the
>> Ubuntu 22 FS 7.4.1 .deb package will try to automatically identify,
>> download and install for you.  You can download the package via the link 
>> *MailScanner
>> has detected a possible fraud attempt from "secure-web.cisco.com" claiming
>> to be*
>> https://secure-web.cisco.com/1J9_Z0HLKDYWwXrGPXi_fqFTQLygJlwVaU-141E5zzDhAkkw1xXapN0nnVgWhTS6XGCgfkc5ueirEA_jvddWCTdYAfUcAH7SxCSaFAzawZC4lvbC8y_9NKqsjhD5ZFMrWt7X3muEEOwu9TlGI9rdd8dbC5nuG2Ghq2KLE70SI4ZxUWWmXSVkXCZyhhXZq5f4wFQyAvLrAHPX0lR7gws9mQ_Q3UYrjc-3musq7AJqT7K0xWCpNBXEO5jRyNhN_5IQyFWAx8la8y0nyTkV52oB8n6sf4nY9sqgm_KaTMe8Mr5-hIcABk8sdULBQpIZmVLKy5JEVPha5YlG51rCIN7H38g/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F7.4.1%2Ffreesurfer_ubuntu22-7.4.1_amd64.deb
>> 
>>  and
>> the install can be done with,
>>
>> … cd to your Downloads to wherever the .deb file is …
>>
>> $ sudo apt install  ./freesurfer_ubuntu22-7.4.1_amd64.deb
>>
>> If the install succeeds, freesurfer will be under
>> /usr/local/freesurfer/7.4.1 which is the path to use for the environment
>> variable FREESURFER_HOME,
>>
>> $ export FREESURFER_HOME=/usr/local/freesurfer/7.4.1
>>
>> If they are not already set in your environment, you should also set,
>>
>> $ export XDG_RUNTIME_DIR=$HOME/.xdg
>>
>> $ export DISPLAY=:0
>>
>> - R.
>>
>> On Dec 27, 2023, at 23:17, Akira Kita  wrote:
>>
>> External Email - Use Caution
>>
>> I have installed FreeSurfer 7.4.1 on Ubuntu 22.04 using the binary tar
>> archive freesurfer-linux-ubuntu22_amd64-7.4.1.tar.gz.
>>
>> Freeview fails to launch with the following error message:
>>
>> This application failed to start because no Qt platform plugin could be
>> initialized. Reinstalling the application may fix this problem.
>> Available platform plugins are: eglfs, linuxfb, minimal, minimalegl, 
>> offscreen,
>> vnc, wayland-egl, wayland, webgl,
>>
>> How can I solve this?
>>
>>
>> Akira
>> ___
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> *MailScanner has detected a possible fraud attempt from
>> "secure-web.cisco.com" claiming to be*
>>

Re: [Freesurfer] Help (Freeview fails to launch)

2023-12-29 Thread fsbuild 
External Email - Use Caution

Depending upon the state of a machine, there is no guarantee a list of 
"required" packages will encompass everything that needs to be 
installed/updated, or that a manual install will work.So we neither 
recommend or support manual/piecemal installs, e.g., via the list below, 
instead of using the built-in linux package management tools.

- R.

On Dec 29, 2023, at 22:32, Kiyotaka Nemoto kiyot...@nemotos.net 
wrote:External Email - Use 
CautionDear Akira,I agree with 
R that installing FreeSurfer using the deb is preferred, but ifyou want 
to stick to tar.gz,below is the list of the packages to be installed when you 
install FreeSurfer using the deb package.So if you install these packages, you 
would be able to run freeview.Hope this helps,Kiyotakasudo apt install -y 
language-pack-en binutils libx11-dev gettext x11-apps \ perl make csh 
tcsh bash file bc gzip tar \ xorg xorg-dev xserver-xorg-video-intel 
libncurses5 libbsd0 libc6 libc6 \ libcom-err2 libcrypt1 libdrm2 libegl1 
libexpat1 libffi7 libfontconfig1 \ libfreetype6 libgcc-s1 libgl1 
libglib2.0-0 libglu1-mesa libglvnd0 libglx0 \ libgomp1 libgssapi-krb5-2 
libice6 libjpeg62 libk5crypto3 libkeyutils1 \ libkrb5-3 libkrb5support0 
libpcre3 libpng16-16 libquadmath0 libsm6 \ libstdc++6 libuuid1 
libwayland-client0 libwayland-cursor0 libx11-6 \ libx11-xcb1 libxau6 
libxcb-icccm4 libxcb-image0 libxcb-keysyms1 \ libxcb-randr0 
libxcb-render-util0 libxcb-render0 libxcb-shape0 \ libxcb-shm0 
libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 \ 
libxcb-xinput0 libxcb-xkb1 libxcb1 libxdmcp6 libxext6 libxft2 libxi6 \ 
libxkbcommon-x11-0 libxkbcommon0 libxmu6 libxrender1 libxss1 libxt6 
zlib1gOn Fri, Dec 29, 2023 at 12:14 PM fsbuild 
fsbu...@contbay.com 
wrote:External Email - Use 
CautionThat message could 
be the result of missing system libraries which the Ubuntu 22 FS 7.4.1 .deb 
package will try to automatically identify, download and install for you. 
You can download the package via the linkMailScanner has detected a 
possible fraud attempt from "secure-web.cisco.com" claiming to 
behttps://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/7.4.1/freesurfer_ubuntu22-7.4.1_amd64.deband
 the install can be done with,… cd to your Downloads to wherever the .deb file 
is …$ sudo apt install ./freesurfer_ubuntu22-7.4.1_amd64.debIf the 
install succeeds, freesurfer will be under /usr/local/freesurfer/7.4.1 which is 
the path to use for the environment variable FREESURFER_HOME,$ export 
FREESURFER_HOME=/usr/local/freesurfer/7.4.1If they are not already set in your 
environment, you should also set,$export XDG_RUNTIME_DIR=$HOME/.xdg$ 
export DISPLAY=:0- R.On Dec 27, 2023, at 23:17, Akira Kita 
jorrydep9...@gmail.com 
wrote:External Email - Use 
CautionI have installed 
FreeSurfer 7.4.1 on Ubuntu 22.04 using the binary tararchive 
freesurfer-linux-ubuntu22_amd64-7.4.1.tar.gz.Freeview fails to launch with the 
following error message:This application failed to start because no Qt platform 
plugin could beinitialized. Reinstalling the application may fix this 
problem.Available platform plugins are: eglfs, linuxfb, minimal, 
minimalegl,offscreen, vnc, wayland-egl, wayland, webgl,How can I solve 
this?　　　Akira___Freesurfer mailing 
listfreesur...@nmr.mgh.harvard.eduMailScanner has detected a possible fraud 
attempt from "secure-web.cisco.com" claiming to 
behttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer___Freesurfer
 mailing listfreesur...@nmr.mgh.harvard.eduMailScanner has detected a possible 
fraud attempt from "secure-web..cisco.com" claiming to 
behttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer--Kiyotaka 
Nemoto, M.D., Ph.D.Associate ProfessorDepartment of PsychiatryDivision of 
Clinical Medicine, Institute of MedicineUniversity of Tsukuba1-1-1 Tennodai 
Tsukuba, Ibaraki 305-8575, 
JapanE-mail:kiyotaka@nemotos.net___Freesurfer
 mailing 
listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Re: [Freesurfer] Help (Freeview fails to launch)

2023-12-29 Thread Kiyotaka Nemoto 
External Email - Use Caution

Dear Akira,

I agree with R that installing FreeSurfer using the deb is preferred, but
if you want to stick to tar.gz,
below is the list of the packages to be installed when you install
FreeSurfer using the deb package.
So if you install these packages, you would be able to run freeview.

Hope this helps,

Kiyotaka

sudo apt install -y language-pack-en binutils libx11-dev gettext x11-apps \
  perl make csh tcsh bash file bc gzip tar \
  xorg xorg-dev xserver-xorg-video-intel libncurses5 libbsd0 libc6 libc6 \
  libcom-err2 libcrypt1 libdrm2 libegl1 libexpat1 libffi7 libfontconfig1 \
  libfreetype6 libgcc-s1 libgl1 libglib2.0-0 libglu1-mesa libglvnd0 libglx0
\
  libgomp1 libgssapi-krb5-2 libice6 libjpeg62 libk5crypto3 libkeyutils1 \
  libkrb5-3 libkrb5support0 libpcre3 libpng16-16 libquadmath0 libsm6 \
  libstdc++6 libuuid1 libwayland-client0 libwayland-cursor0 libx11-6 \
  libx11-xcb1 libxau6 libxcb-icccm4 libxcb-image0 libxcb-keysyms1 \
  libxcb-randr0 libxcb-render-util0 libxcb-render0 libxcb-shape0 \
  libxcb-shm0 libxcb-sync1 libxcb-util1 libxcb-xfixes0 libxcb-xinerama0 \
  libxcb-xinput0 libxcb-xkb1 libxcb1 libxdmcp6 libxext6 libxft2 libxi6 \
  libxkbcommon-x11-0 libxkbcommon0 libxmu6 libxrender1 libxss1 libxt6
zlib1g

On Fri, Dec 29, 2023 at 12:14 PM fsbuild  wrote:

> External Email - Use Caution
>
>
> That message could be the result of missing system libraries which the
> Ubuntu 22 FS 7.4.1 .deb package will try to automatically identify,
> download and install for you.  You can download the package via the link 
> *MailScanner
> has detected a possible fraud attempt from "secure-web.cisco.com" claiming
> to be*
> https://secure-web.cisco.com/1mKMabUX5OEUvCDYuNLL03gy4wla33dNI6Ox8dPzZ_qBoLFWXoufcqAf2xdwBE_BLgKkXD80OQ5NgOUxywRL0N0wr63y6xGFPMuYMVhScIysNXav0Y4z28Z__cNw9SgCGUW68fdgfU8QDsRvR5NNF7vdpsshn6ACHPjYJr6JQcf2sCXJjoGxWj4hC7KyiUOhaRHIYOptZ1d1TMm10pJl2Wo80JxmbN_ExW9WtWOeJE3QcI24nX9nwDsHhamhR7k-K7nlz_WIGFKPWcZpmd9U4iSiiuAC41kYHaqh3oc15rOX9GB1n5yIcEKNHfnxbQ8Q_Pl7T-Cii52ogXtnRAF4Nnw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F7.4.1%2Ffreesurfer_ubuntu22-7.4.1_amd64.deb
> 
>  and
> the install can be done with,
>
> … cd to your Downloads to wherever the .deb file is …
>
> $ sudo apt install  ./freesurfer_ubuntu22-7.4.1_amd64.deb
>
> If the install succeeds, freesurfer will be under
> /usr/local/freesurfer/7.4.1 which is the path to use for the environment
> variable FREESURFER_HOME,
>
> $ export FREESURFER_HOME=/usr/local/freesurfer/7.4.1
>
> If they are not already set in your environment, you should also set,
>
> $ export XDG_RUNTIME_DIR=$HOME/.xdg
>
> $ export DISPLAY=:0
>
> - R.
>
> On Dec 27, 2023, at 23:17, Akira Kita  wrote:
>
> External Email - Use Caution
>
> I have installed FreeSurfer 7.4.1 on Ubuntu 22.04 using the binary tar
> archive freesurfer-linux-ubuntu22_amd64-7.4.1.tar.gz.
>
> Freeview fails to launch with the following error message:
>
> This application failed to start because no Qt platform plugin could be
> initialized. Reinstalling the application may fix this problem.
> Available platform plugins are: eglfs, linuxfb, minimal, minimalegl, 
> offscreen,
> vnc, wayland-egl, wayland, webgl,
>
> How can I solve this?
>
>
> Akira
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://secure-web.cisco.com/1QI73ha0dZUxEGvYoEY_1bYLyCUQHOXV-uF3VAAGaEPKSzyD1nk2DxAarPrXJTqvTusR8gBzTyWOW2-kKzsxSeIadM-y30LBoFcSz5mxwl6BrxdQ6Inv507a1TZr765rV_NZR-bk698jbJ-vqcPvC4EKJ5UTWDndvRP0uBpApG-TtOsQUPPG8ZHqP6nuQ0_aya37i0g22_g_ZxtO8xo3uJ7k-zPCumS_Eh5wFjz0kMaNw8xK2i_tLxfm9uND_vZiF4BA8RBWhfWCKe3bjJxORg6txWtP7nqolZUOmiK8132YcfTy76x54nkehXXP1lKggt5vEVxPG3qW4ilDrAduriw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://secure-web.cisco.com/1QI73ha0dZUxEGvYoEY_1bYLyCUQHOXV-uF3VAAGaEPKSzyD1nk2DxAarPrXJTqvTusR8gBzTyWOW2-kKzsxSeIadM-y30LBoFcSz5mxwl6BrxdQ6Inv507a1TZr765rV_NZR-bk698jbJ-vqcPvC4EKJ5UTWDndvRP0uBpApG-TtOsQUPPG8ZHqP6nuQ0_aya37i0g22_g_ZxtO8xo3uJ7k-zPCumS_Eh5wFjz0kMaNw8xK2i_tLxfm9uND_vZiF4BA8RBWhfWCKe3bjJxORg6txWtP7nqolZUOmiK8132YcfTy76x54nkehXXP1lKggt5vEVxPG3qW4ilDrAduriw/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer



-- 
Kiyotaka Nemoto, M.D., Ph.D.
Associate Professor
Department of Psychiatry
Division of

Re: [Freesurfer] Help (Freeview fails to launch)

2023-12-28 Thread fsbuild 
External Email - Use Caution

That message could be the result of missing system libraries which the 
Ubuntu 22 FS 7.4.1 .deb package will try to automatically identify, download 
and install for you. You can download the package via the 
linkhttps://secure-web.cisco.com/1t9e2mCgXLQVxO1_HRQVcGKF8xT7sodKwA6zzWD3PnvYpEYhzi545ja6T6zaKK2EKrLVHMv6-PenWRMiweIekDa0iPsOeO98ft16CafenUS7q9BCgUBIUTZ4DVfUj_bzh0uPOyWvS4HQa596zdcqA4rd_Q-K_M2WisVZhilBIGDxBi6g1no1JAF0xGe8QRbw1_MNpA42GJvTyE3Ps_fzXnMymgErLwVj6rpub0SX6CnI2T2f2hJ-5kA2_45a9Cuj-xUsFMqWPuXjSNYYpq3gSvNU9KSI_nj_yxnrBbLWqZOIW4xjT17yKPejFlXKp808Nd2U_ZOe-9oEV5ZotlsGDQw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Fpub%2Fdist%2Ffreesurfer%2F7.4.1%2Ffreesurfer_ubuntu22-7.4.1_amd64.deb%26nbsp;and
 the install can be done with,
… cd to your Downloads to wherever the .deb file is …
$ sudo apt install ./freesurfer_ubuntu22-7.4.1_amd64.deb
If the install succeeds, freesurfer will be under /usr/local/freesurfer/7.4.1 
which is the path to use for the environment variable FREESURFER_HOME,
$ export FREESURFER_HOME=/usr/local/freesurfer/7.4.1
If they are not already set in your environment, you should also set,
$export XDG_RUNTIME_DIR=$HOME/.xdg
$ export DISPLAY=:0

- R.

On Dec 27, 2023, at 23:17, Akira Kita jorrydep9...@gmail.com 
wrote:External Email - Use 
CautionI have installed 
FreeSurfer 7.4.1 on Ubuntu 22.04 using the binary tararchive 
freesurfer-linux-ubuntu22_amd64-7.4.1.tar.gz.Freeview fails to launch with the 
following error message:This application failed to start because no Qt platform 
plugin could beinitialized. Reinstalling the application may fix this 
problem.Available platform plugins are: eglfs, linuxfb, minimal, 
minimalegl,offscreen, vnc, wayland-egl, wayland, webgl,How can I solve 
this?　　　Akira___Freesurfer mailing 
listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

[Freesurfer] Help (Freeview fails to launch)

2023-12-27 Thread Akira Kita 
External Email - Use Caution

I have installed FreeSurfer 7.4.1 on Ubuntu 22.04 using the binary tar
archive freesurfer-linux-ubuntu22_amd64-7.4.1.tar.gz.

Freeview fails to launch with the following error message:

This application failed to start because no Qt platform plugin could be
initialized. Reinstalling the application may fix this problem.
Available platform plugins are: eglfs, linuxfb, minimal, minimalegl, offscreen,
vnc, wayland-egl, wayland, webgl,

How can I solve this?


Akira
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer