Re: [Freesurfer] ID-swapping freesurfer data?

[Douglas N Greve]

On 08/10/2015 02:35 PM, Nate Vack wrote:
> On Fri, Aug 7, 2015 at 2:45 PM Douglas N Greve 
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
> On 08/07/2015 03:11 PM, Nate Vack wrote:
> > Thanks. Any other file types I should look for tags in?
> I think the surfaces have the subject name imbedded in them.
>
>
> Would there be a way to take it out?
I just looked, and they do not have the subject name in them.
>
> > Out of curiosity, how do .mgz and nifti files differ?
> >
> mgz files have a lot more header info
>
>
> Will converting to nifti and back strip important header info?
yes
>
> Thanks!
> -Nate
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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Re: [Freesurfer] ID-swapping freesurfer data?

[Bruce Fischl]

yes, it should

Bruce
On Mon, 10 Aug 2015, Nate Vack wrote:


On Fri, Aug 7, 2015 at 2:45 PM Douglas N Greve 
wrote:
 
  On 08/07/2015 03:11 PM, Nate Vack wrote:
  > Thanks. Any other file types I should look for tags in?
  I think the surfaces have the subject name imbedded in them.


Would there be a way to take it out?
 
  > Out of curiosity, how do .mgz and nifti files differ?
  >
  mgz files have a lot more header info


Will converting to nifti and back strip important header info?

Thanks!
-Nate

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Re: [Freesurfer] ID-swapping freesurfer data?

[Nate Vack]

On Fri, Aug 7, 2015 at 2:45 PM Douglas N Greve 
wrote:


> On 08/07/2015 03:11 PM, Nate Vack wrote:
> > Thanks. Any other file types I should look for tags in?
> I think the surfaces have the subject name imbedded in them.
>

Would there be a way to take it out?


> > Out of curiosity, how do .mgz and nifti files differ?
> >
> mgz files have a lot more header info


Will converting to nifti and back strip important header info?

Thanks!
-Nate
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
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but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] ID-swapping freesurfer data?

[Douglas N Greve]

On 08/07/2015 03:11 PM, Nate Vack wrote:
> Thanks. Any other file types I should look for tags in?
I think the surfaces have the subject name imbedded in them.
>
> Out of curiosity, how do .mgz and nifti files differ?
>
mgz files have a lot more header info
> Best,
> -Nate
>
> On Thu, Aug 6, 2015 at 9:28 AM Douglas N Greve 
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
> We don't have tools to explicitly change those strings. You can read
> them into matlab as Bruce suggests. You can also convert them to nifti
> and then back to mgz.
>
> On 08/05/2015 05:07 PM, Nate Vack wrote:
> > Thanks!
> >
> > One complication I'm seeing is that when I uncompress, say, an .mgz
> > file, the old subject number is still embedded in some text near the
> > end of the file*. Since we want to change these ID numbers for
> > de-identification purposes, we'd need to change them there, too.
> >
> > Is there a way to either strip those things or edit them?
> >
> > Thanks!
> > -Nate
> >
> > * For example:
> >
> >
> 
> P/studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/transforms/talairach.xfm
> > UNKNOWN
> > @AutoAlign   0.00   0.00   0.00   0.00 0.00
> > 0.00   0.00   0.00   0.00 0.00  0.00
> > 0.00   0.00   0.00 0.00   0.00
> > mri_convert
> > /studies/STUDY/DATA/mri/processed/IDENTIFIER/anat/T1High_native1.nii
> >
> /studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/orig/001.mgz
> > ProgramVersion: $Name: stable5 $  TimeStamp: 2014/08/25-21:51:59-GMT
> >  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_convert.c,v
> > 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $  User: USER Machine:
> > MACHINE  Platform: Linux  PlatformVersion:
> 2.6.32-431.20.3.el6.x86_64
> >  CompilerName: GCC  CompilerVersion: 40400
> > mri_convert
> >
> /studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/rawavg.mgz
> > /studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/orig.mgz
> > --conform ProgramVersion: $Name: stable5 $  TimeStamp:
> > 2014/08/25-21:54:39-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS:
> > $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
> >  User: USER  Machine: MACHINE  Platform: Linux PlatformVersion:
> > 2.6.32-431.20.3.el6.x86_64  CompilerName: GCC CompilerVersion: 40400
> >
> > On Mon, Aug 3, 2015 at 12:03 PM Douglas N Greve
> > mailto:gr...@nmr.mgh.harvard.edu>
>  >> wrote:
> >
> > I think that should work without problem.
> >
> > On 08/03/2015 12:51 PM, Nate Vack wrote:
> > > Hi all,
> > >
> > > We're looking to change the ID system we're using for some
> > freesurfer
> > > data. Will doing do be as simple as renaming our
> single-subject data
> > > directories and restarting analysis from that point, or
> would we
> > need
> > > to do something more complicated?
> > >
> > > Many thanks,
> > > -Nate
> > >
> > >
> > > ___
> > > Freesurfer mailing list
> > > Freesurfer@nmr.mgh.harvard.edu
> 
> >  >
> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> > --
> > Douglas N. Greve, Ph.D.
> > MGH-NMR Center
> > gr...@nmr.mgh.harvard.edu 
> >
> > Phone Number: 617-724-2358
> > Fax: 617-726-7422
> >
> > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> 
> > 
> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> 
> > 
> > Outgoing:
> > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> >
> > ___
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> 
>  >
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> >
> > The information in this e-mail is intended only for the
> person to
> > whom it is
> > addressed. If you believe th

Re: [Freesurfer] ID-swapping freesurfer data?

[Nate Vack]

Thanks. Any other file types I should look for tags in?

Out of curiosity, how do .mgz and nifti files differ?

Best,
-Nate

On Thu, Aug 6, 2015 at 9:28 AM Douglas N Greve 
wrote:

> We don't have tools to explicitly change those strings. You can read
> them into matlab as Bruce suggests. You can also convert them to nifti
> and then back to mgz.
>
> On 08/05/2015 05:07 PM, Nate Vack wrote:
> > Thanks!
> >
> > One complication I'm seeing is that when I uncompress, say, an .mgz
> > file, the old subject number is still embedded in some text near the
> > end of the file*. Since we want to change these ID numbers for
> > de-identification purposes, we'd need to change them there, too.
> >
> > Is there a way to either strip those things or edit them?
> >
> > Thanks!
> > -Nate
> >
> > * For example:
> >
> >
> P/studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/transforms/talairach.xfm
> > UNKNOWN
> > @AutoAlign   0.00   0.00   0.00   0.00 0.00
> > 0.00   0.00   0.00   0.00 0.00   0.00
> > 0.00   0.00   0.00 0.00   0.00
> > mri_convert
> > /studies/STUDY/DATA/mri/processed/IDENTIFIER/anat/T1High_native1.nii
> > /studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/orig/001.mgz
> > ProgramVersion: $Name: stable5 $  TimeStamp: 2014/08/25-21:51:59-GMT
> >  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_convert.c,v
> > 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $  User: USER  Machine:
> > MACHINE  Platform: Linux  PlatformVersion: 2.6.32-431.20.3.el6.x86_64
> >  CompilerName: GCC  CompilerVersion: 40400
> > mri_convert
> > /studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/rawavg.mgz
> > /studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/orig.mgz
> > --conform ProgramVersion: $Name: stable5 $  TimeStamp:
> > 2014/08/25-21:54:39-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS:
> > $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
> >  User: USER  Machine: MACHINE  Platform: Linux  PlatformVersion:
> > 2.6.32-431.20.3.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400
> >
> > On Mon, Aug 3, 2015 at 12:03 PM Douglas N Greve
> > mailto:gr...@nmr.mgh.harvard.edu>> wrote:
> >
> > I think that should work without problem.
> >
> > On 08/03/2015 12:51 PM, Nate Vack wrote:
> > > Hi all,
> > >
> > > We're looking to change the ID system we're using for some
> > freesurfer
> > > data. Will doing do be as simple as renaming our single-subject
> data
> > > directories and restarting analysis from that point, or would we
> > need
> > > to do something more complicated?
> > >
> > > Many thanks,
> > > -Nate
> > >
> > >
> > > ___
> > > Freesurfer mailing list
> > > Freesurfer@nmr.mgh.harvard.edu
> > 
> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> > --
> > Douglas N. Greve, Ph.D.
> > MGH-NMR Center
> > gr...@nmr.mgh.harvard.edu 
> > Phone Number: 617-724-2358
> > Fax: 617-726-7422
> >
> > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> > 
> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> > 
> > Outgoing:
> > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
> >
> > ___
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu  Freesurfer@nmr.mgh.harvard.edu>
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> >
> > The information in this e-mail is intended only for the person to
> > whom it is
> > addressed. If you believe this e-mail was sent to you in error and
> > the e-mail
> > contains patient information, please contact the Partners
> > Compliance HelpLine at
> > http://www.partners.org/complianceline . If the e-mail was sent to
> > you in error
> > but does not contain patient information, please contact the
> > sender and properly
> > dispose of the e-mail.
> >
> >
> >
> > ___
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu

Re: [Freesurfer] ID-swapping freesurfer data?

[Douglas N Greve]

We don't have tools to explicitly change those strings. You can read 
them into matlab as Bruce suggests. You can also convert them to nifti 
and then back to mgz.

On 08/05/2015 05:07 PM, Nate Vack wrote:
> Thanks!
>
> One complication I'm seeing is that when I uncompress, say, an .mgz 
> file, the old subject number is still embedded in some text near the 
> end of the file*. Since we want to change these ID numbers for 
> de-identification purposes, we'd need to change them there, too.
>
> Is there a way to either strip those things or edit them?
>
> Thanks!
> -Nate
>
> * For example:
>
> P/studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/transforms/talairach.xfm
> UNKNOWN
> @AutoAlign   0.00   0.00   0.00   0.00 0.00   
> 0.00   0.00   0.00   0.00 0.00   0.00   
> 0.00   0.00   0.00 0.00   0.00
> mri_convert 
> /studies/STUDY/DATA/mri/processed/IDENTIFIER/anat/T1High_native1.nii 
> /studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/orig/001.mgz 
> ProgramVersion: $Name: stable5 $  TimeStamp: 2014/08/25-21:51:59-GMT 
>  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_convert.c,v 
> 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $  User: USER  Machine: 
> MACHINE  Platform: Linux  PlatformVersion: 2.6.32-431.20.3.el6.x86_64 
>  CompilerName: GCC  CompilerVersion: 40400
> mri_convert 
> /studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/rawavg.mgz 
> /studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/orig.mgz 
> --conform ProgramVersion: $Name: stable5 $  TimeStamp: 
> 2014/08/25-21:54:39-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: 
> $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ 
>  User: USER  Machine: MACHINE  Platform: Linux  PlatformVersion: 
> 2.6.32-431.20.3.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400
>
> On Mon, Aug 3, 2015 at 12:03 PM Douglas N Greve 
> mailto:gr...@nmr.mgh.harvard.edu>> wrote:
>
> I think that should work without problem.
>
> On 08/03/2015 12:51 PM, Nate Vack wrote:
> > Hi all,
> >
> > We're looking to change the ID system we're using for some
> freesurfer
> > data. Will doing do be as simple as renaming our single-subject data
> > directories and restarting analysis from that point, or would we
> need
> > to do something more complicated?
> >
> > Many thanks,
> > -Nate
> >
> >
> > ___
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> 
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu 
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> 
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> 
> Outgoing:
> ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu 
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to
> whom it is
> addressed. If you believe this e-mail was sent to you in error and
> the e-mail
> contains patient information, please contact the Partners
> Compliance HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to
> you in error
> but does not contain patient information, please contact the
> sender and properly
> dispose of the e-mail.
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

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Re: [Freesurfer] ID-swapping freesurfer data?

[Bruce Fischl]

the easiest thing to do is to read them into matlab and write them back 
out. I think that strips all the tags (which is where the subject name is 
stored)

On Wed, 5 Aug 2015, Nate Vack wrote:


Thanks!
One complication I'm seeing is that when I uncompress, say, an .mgz file,
the old subject number is still embedded in some text near the end of the
file*. Since we want to change these ID numbers for de-identification
purposes, we'd need to change them there, too.

Is there a way to either strip those things or edit them?

Thanks!
-Nate

* For example:

P/studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/transforms/tal
airach.xfm
UNKNOWN
@AutoAlign   0.00   0.00   0.00   0.00   0.00   0.00
  0.00   0.00   0.00   0.00   0.00   0.00   0.00
  0.00   0.00   0.00
mri_convert
/studies/STUDY/DATA/mri/processed/IDENTIFIER/anat/T1High_native1.nii
/studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/orig/001.mgz
ProgramVersion: $Name: stable5 $  TimeStamp: 2014/08/25-21:51:59-GMT
 BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_convert.c,v 1.179.2.7
2012/09/05 21:55:16 mreuter Exp $  User: USER  Machine: MACHINE  Platform:
Linux  PlatformVersion: 2.6.32-431.20.3.el6.x86_64  CompilerName: GCC
 CompilerVersion: 40400  
mri_convert
/studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/rawavg.mgz
/studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/orig.mgz
--conform ProgramVersion: $Name: stable5 $  TimeStamp:
2014/08/25-21:54:39-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id:
mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $  User: USER
 Machine: MACHINE  Platform: Linux  PlatformVersion:
2.6.32-431.20.3.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400

On Mon, Aug 3, 2015 at 12:03 PM Douglas N Greve 
wrote:
  I think that should work without problem.

  On 08/03/2015 12:51 PM, Nate Vack wrote:
  > Hi all,
  >
  > We're looking to change the ID system we're using for some
  freesurfer
  > data. Will doing do be as simple as renaming our
  single-subject data
  > directories and restarting analysis from that point, or would
  we need
  > to do something more complicated?
  >
  > Many thanks,
  > -Nate
  >
  >
  > ___
  > Freesurfer mailing list
  > Freesurfer@nmr.mgh.harvard.edu
  > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

  --
  Douglas N. Greve, Ph.D.
  MGH-NMR Center
  gr...@nmr.mgh.harvard.edu
  Phone Number: 617-724-2358
  Fax: 617-726-7422

  Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
  FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
  www.nmr.mgh.harvard.edu/facility/filedrop/index.html
  Outgoing:
  ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

  ___
  Freesurfer mailing list
  Freesurfer@nmr.mgh.harvard.edu
  https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


  The information in this e-mail is intended only for the person
  to whom it is
  addressed. If you believe this e-mail was sent to you in error
  and the e-mail
  contains patient information, please contact the Partners
  Compliance HelpLine at
  http://www.partners.org/complianceline . If the e-mail was sent
  to you in error
  but does not contain patient information, please contact the
  sender and properly
  dispose of the e-mail.


___
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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] ID-swapping freesurfer data?

[Nate Vack]

Thanks!

One complication I'm seeing is that when I uncompress, say, an .mgz file,
the old subject number is still embedded in some text near the end of the
file*. Since we want to change these ID numbers for de-identification
purposes, we'd need to change them there, too.

Is there a way to either strip those things or edit them?

Thanks!
-Nate

* For example:

P/studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/transforms/talairach.xfm
UNKNOWN
@AutoAlign   0.00   0.00   0.00   0.00   0.00
0.00   0.00   0.00   0.00   0.00   0.00   0.00
  0.00   0.00   0.00   0.00
mri_convert
/studies/STUDY/DATA/mri/processed/IDENTIFIER/anat/T1High_native1.nii
/studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/orig/001.mgz
ProgramVersion: $Name: stable5 $  TimeStamp: 2014/08/25-21:51:59-GMT
 BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_convert.c,v 1.179.2.7
2012/09/05 21:55:16 mreuter Exp $  User: USER  Machine: MACHINE  Platform:
Linux  PlatformVersion: 2.6.32-431.20.3.el6.x86_64  CompilerName: GCC
 CompilerVersion: 40400
mri_convert
/studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/rawavg.mgz
/studies/STUDY/DATA/mri/processed/freesurfer/IDENTIFIER/mri/orig.mgz
--conform ProgramVersion: $Name: stable5 $  TimeStamp:
2014/08/25-21:54:39-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id:
mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $  User: USER
 Machine: MACHINE  Platform: Linux  PlatformVersion:
2.6.32-431.20.3.el6.x86_64  CompilerName: GCC  CompilerVersion: 40400

On Mon, Aug 3, 2015 at 12:03 PM Douglas N Greve 
wrote:

> I think that should work without problem.
>
> On 08/03/2015 12:51 PM, Nate Vack wrote:
> > Hi all,
> >
> > We're looking to change the ID system we're using for some freesurfer
> > data. Will doing do be as simple as renaming our single-subject data
> > directories and restarting analysis from that point, or would we need
> > to do something more complicated?
> >
> > Many thanks,
> > -Nate
> >
> >
> > ___
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] ID-swapping freesurfer data?

[Douglas N Greve]

I think that should work without problem.

On 08/03/2015 12:51 PM, Nate Vack wrote:
> Hi all,
>
> We're looking to change the ID system we're using for some freesurfer 
> data. Will doing do be as simple as renaming our single-subject data 
> directories and restarting analysis from that point, or would we need 
> to do something more complicated?
>
> Many thanks,
> -Nate
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

[Freesurfer] ID-swapping freesurfer data?

[Nate Vack]

Hi all,

We're looking to change the ID system we're using for some freesurfer data.
Will doing do be as simple as renaming our single-subject data directories
and restarting analysis from that point, or would we need to do something
more complicated?

Many thanks,
-Nate
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.