Re: [Freesurfer] Manually editing location of surface

2018-08-29 Thread Diamond, Bram Ryder 
Hi Elena,


I've taken a look through the files you shared with us and can only find the 
complete subject directories for sub-90188_run-01_T1w and sub-90310. The 
subject directory for sub-01262 (and 209 other subjects) is empty. Could you 
please send another link with the subject directory for sub-01262?


Thanks,

Bram


From: freesurfer-boun...@nmr.mgh.harvard.edu 
 on behalf of Elena Nicole Dominguez 

Sent: Wednesday, August 22, 2018 3:01:34 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Manually editing location of surface


External Email - Use Caution

The subject in particular is in their 90's. I have been seeing a similar 
occurrence in many of my other subjects as well. I will be attaching a link 
through google drive to share the subject I recently sent. 
(https://drive.google.com/a/uci.edu/file/d/1ZuekNGyEJ7gPbM3Yl3S8HeNMVLL60l0_/view?usp=sharing)

Thank you for your help in looking into this and please let me know what else 
is needed on my behalf.

[https://drive-thirdparty.googleusercontent.com/16/type/application/x-gzip] 
sub-01262.tar.gz<https://drive.google.com/a/uci.edu/file/d/1ZuekNGyEJ7gPbM3Yl3S8HeNMVLL60l0_/view?usp=drive_web>


On Wed, Aug 22, 2018 at 8:44 AM Bruce Fischl 
mailto:fis...@nmr.mgh.harvard.edu>> wrote:
wow, looks like a pretty serious failure (which we rarely see). If you
tar, gzip and ftp the entire subject dir for this subject we will take a
look

cheers
Bruce
On Tue, 21 Aug 2018, Elena Nicole Dominguez wrote:

>
> External Email - Use Caution
>
> Thank you for getting back to me. I am attaching an example of one of the 
> problems I am encountering.
>
> On Tue, Aug 21, 2018 at 8:57 AM Bruce Fischl 
> mailto:fis...@nmr.mgh.harvard.edu>> wrote:
>   Hi Elena
>
>   can you send us an image to show us what the issue is? The correct
>   intervention depends on why the surface is not correct.
>
>   cheers
>   Bruce
>   On Fri, 17 Aug 2018,
>   Elena Nicole Dominguez wrote:
>
>   >
>   > External Email - Use Caution
>   >
>   > Hello FreeSurfer Developers,
>   > On the tutorial it states that it is not possible to directly edit 
> the location of a surface.
>   > However, on the corresponding video posted onto the website the 
> gentleman mentions being able to
>   > accomplish this. I have been trying to locate the literature on how 
> to do this and have not been
>   > successful. I am using 
> 'freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c'
>   >
>   > I would kindly appreciate some help on locating any tutorials or 
> information available.
>   >
>   > Thank you for your help.
>   >
>   >___
>   Freesurfer mailing list
>   Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu>
>   https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>   The information in this e-mail is intended only for the person to whom 
> it is
>   addressed. If you believe this e-mail was sent to you in error and the 
> e-mail
>   contains patient information, please contact the Partners Compliance 
> HelpLine at
>   http://www.partners.org/complianceline . If the e-mail was sent to you 
> in error
>   but does not contain patient information, please contact the sender and 
> properly
>   dispose of the e-mail.
>
>
>___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu>
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] Manually editing location of surface

2018-08-22 Thread Elena Nicole Dominguez 
External Email - Use Caution

The subject in particular is in their 90's. I have been seeing a similar
occurrence in many of my other subjects as well. I will be attaching a link
through google drive to share the subject I recently sent. (
https://drive.google.com/a/uci.edu/file/d/1ZuekNGyEJ7gPbM3Yl3S8HeNMVLL60l0_/view?usp=sharing
)

Thank you for your help in looking into this and please let me know what
else is needed on my behalf.

 sub-01262.tar.gz



On Wed, Aug 22, 2018 at 8:44 AM Bruce Fischl 
wrote:

> wow, looks like a pretty serious failure (which we rarely see). If you
> tar, gzip and ftp the entire subject dir for this subject we will take a
> look
>
> cheers
> Bruce
> On Tue, 21 Aug 2018, Elena Nicole Dominguez wrote:
>
> >
> > External Email - Use Caution
> >
> > Thank you for getting back to me. I am attaching an example of one of
> the problems I am encountering.
> >
> > On Tue, Aug 21, 2018 at 8:57 AM Bruce Fischl 
> wrote:
> >   Hi Elena
> >
> >   can you send us an image to show us what the issue is? The correct
> >   intervention depends on why the surface is not correct.
> >
> >   cheers
> >   Bruce
> >   On Fri, 17 Aug 2018,
> >   Elena Nicole Dominguez wrote:
> >
> >   >
> >   > External Email - Use Caution
> >   >
> >   > Hello FreeSurfer Developers,
> >   > On the tutorial it states that it is not possible to directly
> edit the location of a surface.
> >   > However, on the corresponding video posted onto the website the
> gentleman mentions being able to
> >   > accomplish this. I have been trying to locate the literature on
> how to do this and have not been
> >   > successful. I am using
> 'freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c'
> >   >
> >   > I would kindly appreciate some help on locating any tutorials or
> information available.
> >   >
> >   > Thank you for your help.
> >   >
> >   >___
> >   Freesurfer mailing list
> >   Freesurfer@nmr.mgh.harvard.edu
> >   https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> >
> >
> >   The information in this e-mail is intended only for the person to
> whom it is
> >   addressed. If you believe this e-mail was sent to you in error and
> the e-mail
> >   contains patient information, please contact the Partners
> Compliance HelpLine at
> >   http://www.partners.org/complianceline . If the e-mail was sent
> to you in error
> >   but does not contain patient information, please contact the
> sender and properly
> >   dispose of the e-mail.
> >
> >
> >___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] Manually editing location of surface

2018-08-22 Thread Bruce Fischl 
wow, looks like a pretty serious failure (which we rarely see). If you 
tar, gzip and ftp the entire subject dir for this subject we will take a 
look


cheers
Bruce
On Tue, 21 Aug 2018, Elena Nicole Dominguez wrote:



External Email - Use Caution

Thank you for getting back to me. I am attaching an example of one of the 
problems I am encountering.

On Tue, Aug 21, 2018 at 8:57 AM Bruce Fischl  wrote:
  Hi Elena

  can you send us an image to show us what the issue is? The correct
  intervention depends on why the surface is not correct.

  cheers
  Bruce
  On Fri, 17 Aug 2018,
  Elena Nicole Dominguez wrote:

  >
  > External Email - Use Caution
  >
  > Hello FreeSurfer Developers,
  > On the tutorial it states that it is not possible to directly edit the 
location of a surface.
  > However, on the corresponding video posted onto the website the 
gentleman mentions being able to
  > accomplish this. I have been trying to locate the literature on how to 
do this and have not been
  > successful. I am using 'freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c'
  >
  > I would kindly appreciate some help on locating any tutorials or 
information available.
  >
  > Thank you for your help.
  >
  >___
  Freesurfer mailing list
  Freesurfer@nmr.mgh.harvard.edu
  https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


  The information in this e-mail is intended only for the person to whom it 
is
  addressed. If you believe this e-mail was sent to you in error and the 
e-mail
  contains patient information, please contact the Partners Compliance 
HelpLine at
  http://www.partners.org/complianceline . If the e-mail was sent to you in 
error
  but does not contain patient information, please contact the sender and 
properly
  dispose of the e-mail.


___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] Manually editing location of surface

2018-08-21 Thread Elena Nicole Dominguez 
External Email - Use Caution

Thank you for getting back to me. I am attaching an example of one of the
problems I am encountering.

On Tue, Aug 21, 2018 at 8:57 AM Bruce Fischl 
wrote:

> Hi Elena
>
> can you send us an image to show us what the issue is? The correct
> intervention depends on why the surface is not correct.
>
> cheers
> Bruce
> On Fri, 17 Aug 2018,
> Elena Nicole Dominguez wrote:
>
> >
> > External Email - Use Caution
> >
> > Hello FreeSurfer Developers,
> > On the tutorial it states that it is not possible to directly edit the
> location of a surface.
> > However, on the corresponding video posted onto the website the
> gentleman mentions being able to
> > accomplish this. I have been trying to locate the literature on how to
> do this and have not been
> > successful. I am using 'freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c'
> >
> > I would kindly appreciate some help on locating any tutorials or
> information available.
> >
> > Thank you for your help.
> >
> >___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it
> is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

Re: [Freesurfer] Manually editing location of surface

2018-08-21 Thread Bruce Fischl 

Hi Elena

can you send us an image to show us what the issue is? The correct 
intervention depends on why the surface is not correct.


cheers
Bruce
On Fri, 17 Aug 2018, 
Elena Nicole Dominguez wrote:




External Email - Use Caution

Hello FreeSurfer Developers,
On the tutorial it states that it is not possible to directly edit the location 
of a surface.
However, on the corresponding video posted onto the website the gentleman 
mentions being able to
accomplish this. I have been trying to locate the literature on how to do this 
and have not been
successful. I am using 'freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c'

I would kindly appreciate some help on locating any tutorials or information 
available.

Thank you for your help.

___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.

[Freesurfer] Manually editing location of surface

2018-08-17 Thread Elena Nicole Dominguez 
External Email - Use Caution

Hello FreeSurfer Developers,

On the tutorial it states that it is not possible to directly edit the
location of a surface. However, on the corresponding video posted onto the
website the gentleman mentions being able to accomplish this. I have been
trying to locate the literature on how to do this and have not been
successful. I am using 'freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c'

I would kindly appreciate some help on locating any tutorials or
information available.

Thank you for your help.
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.