Re: [Freesurfer] Matlab help
Thanks Sebastian.
Will take a note of it.
cheers
Saurabh Thakur,
On Tue, Mar 4, 2014 at 1:20 PM, Sebastian Moeller
sebastian.moell...@rwth-aachen.de wrote:
Hi Saurabh,
On Mar 4, 2014, at 07:56 , Saurabh Thakur srbht...@gmail.com wrote:
Hi Markus Gschwind,
I am using Matlab 7.12.0.635 (R2011a),
I am not able to read the dicom image neither brain.mgz file nor the
surface file in matlab.
I have added these file in matlab directory.
Comment or error i m getting is :
for example :
load_dicom_fl(IM_0001)
??? Undefined function or variable 'IM_0001'.
2nd example :
MRIread(brain.mgz,brainMRI.hdr)
??? Undefined variable brain or function brain.mgz.
You need to supply the full path to the volumes in a string, so
assuming you called matlab from the same directory where brain.mgz is
located, or used mat lab's cd('/patrh/to/your/data') to make sure you are
there. Then simply calling MRIread('brain.mgz'); should do the trick;
note: only put the stuff between the double quotes into the matlab command
window.
best
Sebastian
I looking forward to work on matlab along with freesurfer.
Looking for your reply asap.
Thanks for reply.
cheers
Saurabh Thakur,
On Tue, Mar 4, 2014 at 12:17 PM, markus.gschw...@gmail.com wrote:
Hi!
Can you specify what happens when you try to read the files?
On 4 mars 2014, at 06:44, Saurabh Thakur srbht...@gmail.com wrote:
Hello Freesurfer,
I am trying to runs MRIread.m file in matlab.
But it is not reading the brain.mgz or any other format.
Can u help in this regards.
Thanks in advance,
cheers
Saurabh Thakur,
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Re: [Freesurfer] Matlab help
Hi Saurabh in general we can't help you unless you give us more information, like the screen output of the command you ran that failed. cheers Bruce On Tue, 4 Mar 2014, Saurabh Thakur wrote: Hello Freesurfer, I am trying to runs MRIread.m file in matlab. But it is not reading the brain.mgz or any other format. Can u help in this regards. Thanks in advance, cheers Saurabh Thakur, ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Matlab help
Try vol = MRIread('brain.mgz')
On 03/04/2014 01:56 AM, Saurabh Thakur wrote:
Hi Markus Gschwind,
I am using Matlab 7.12.0.635 (R2011a),
I am not able to read the dicom image neither brain.mgz file nor the
surface file in matlab.
I have added these file in matlab directory.
Comment or error i m getting is :
for example :
* load_dicom_fl(IM_0001)
??? Undefined function or variable 'IM_0001'.
*
2nd example :
* MRIread(brain.mgz,brainMRI.hdr)
??? Undefined variable brain or function brain.mgz.*
I looking forward to work on matlab along with freesurfer.
Looking for your reply asap.
Thanks for reply.
cheers
Saurabh Thakur,
On Tue, Mar 4, 2014 at 12:17 PM, markus.gschw...@gmail.com
mailto:markus.gschw...@gmail.com wrote:
Hi!
Can you specify what happens when you try to read the files?
On 4 mars 2014, at 06:44, Saurabh Thakur srbht...@gmail.com
mailto:srbht...@gmail.com wrote:
Hello Freesurfer,
I am trying to runs MRIread.m file in matlab.
But it is not reading the brain.mgz or any other format.
Can u help in this regards.
Thanks in advance,
cheers
Saurabh Thakur,
___
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[Freesurfer] Matlab help
Hello Freesurfer, I am trying to runs MRIread.m file in matlab. But it is not reading the brain.mgz or any other format. Can u help in this regards. Thanks in advance, cheers Saurabh Thakur, ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Matlab help
Hi! Can you specify what happens when you try to read the files? On 4 mars 2014, at 06:44, Saurabh Thakur srbht...@gmail.com wrote: Hello Freesurfer, I am trying to runs MRIread.m file in matlab. But it is not reading the brain.mgz or any other format. Can u help in this regards. Thanks in advance, cheers Saurabh Thakur, ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Re: [Freesurfer] Matlab help
Hi Markus Gschwind, I am using Matlab 7.12.0.635 (R2011a), I am not able to read the dicom image neither brain.mgz file nor the surface file in matlab. I have added these file in matlab directory. Comment or error i m getting is : for example : * load_dicom_fl(IM_0001)??? Undefined function or variable 'IM_0001'.* 2nd example : * MRIread(brain.mgz,brainMRI.hdr) ??? Undefined variable brain or function brain.mgz.* I looking forward to work on matlab along with freesurfer. Looking for your reply asap. Thanks for reply. cheers Saurabh Thakur, On Tue, Mar 4, 2014 at 12:17 PM, markus.gschw...@gmail.com wrote: Hi! Can you specify what happens when you try to read the files? On 4 mars 2014, at 06:44, Saurabh Thakur srbht...@gmail.com wrote: Hello Freesurfer, I am trying to runs MRIread.m file in matlab. But it is not reading the brain.mgz or any other format. Can u help in this regards. Thanks in advance, cheers Saurabh Thakur, ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Matlab help
Hi Saurabh,
On Mar 4, 2014, at 07:56 , Saurabh Thakur srbht...@gmail.com wrote:
Hi Markus Gschwind,
I am using Matlab 7.12.0.635 (R2011a),
I am not able to read the dicom image neither brain.mgz file nor the surface
file in matlab.
I have added these file in matlab directory.
Comment or error i m getting is :
for example :
load_dicom_fl(IM_0001)
??? Undefined function or variable 'IM_0001'.
2nd example :
MRIread(brain.mgz,brainMRI.hdr)
??? Undefined variable brain or function brain.mgz.
You need to supply the full path to the volumes in a string, so
assuming you called matlab from the same directory where brain.mgz is located,
or used mat lab's cd('/patrh/to/your/data') to make sure you are there. Then
simply calling MRIread('brain.mgz'); should do the trick; note: only put the
stuff between the double quotes into the matlab command window.
best
Sebastian
I looking forward to work on matlab along with freesurfer.
Looking for your reply asap.
Thanks for reply.
cheers
Saurabh Thakur,
On Tue, Mar 4, 2014 at 12:17 PM, markus.gschw...@gmail.com wrote:
Hi!
Can you specify what happens when you try to read the files?
On 4 mars 2014, at 06:44, Saurabh Thakur srbht...@gmail.com wrote:
Hello Freesurfer,
I am trying to runs MRIread.m file in matlab.
But it is not reading the brain.mgz or any other format.
Can u help in this regards.
Thanks in advance,
cheers
Saurabh Thakur,
___
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https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the
e-mail
contains patient information, please contact the Partners Compliance
HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in
error
but does not contain patient information, please contact the sender and
properly
dispose of the e-mail.
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