Hi Stefano - Type which trac-all to find out where trac-all lives on
your computer, then copy the updated version over it.
a.y
On Mon, 28 Jan 2013, std...@virgilio.it wrote:
Thank you very much for you kindness Anastasia.
The folder that contains .nii.gz file is correct?
I'm looking the recommended trac-all update. Where can I put it?
Stefano
Messaggio originale
Da: ayend...@nmr.mgh.harvard.edu
Data: 28-gen-2013 16.45
A: std...@virgilio.it
Cc: freesurfer@nmr.mgh.harvard.edu
Ogg: Re: [Freesurfer] R: R: Re: TRACULA
Hi Stefano - The argument of the -c option is a configuration file, not a
directory. For more info on trac-all and setting up the configuration
file, please see the trac-all wiki page:
http://www.freesurfer.net/fswiki/trac-all
and tracula tutorials:
http://www.freesurfer.net/fswiki/FsTutorial/Tracula
a.y
On Mon, 28 Jan 2013, std...@virgilio.it wrote:
Hi and thank you very much for your availability.
Now, I'm running tracula as following:
trac-all -prep -c /Applications/freesurfer/subjects/subject_prova/CON_01
my CON_01 forder contains: data.nii.gz (DWI), bvals and bvecs (as used in
previous FSL analysis) and T1-images.nii.gz. File.niii.gz are the same
that I have previously used in FSL analysis.
Please, my questions are:
a- Are correct the command and the files (dyrectory positioning and their
extensions)?
b- Now my computer seem to running but after 1 h from the start, I
visualize
on my desktop this message Your Mac 0SX has no more space available for
application memory.
My pc is a iMAC OS X Mountain Lion. 2.7 GHz Intel Core i5; 8GB 1600 MHz
DDR3; NVIDIA GeForce DT640M 512 MB; 762,42 GB are free on a total of
999,35
I have download the package for (Snow)Leopard (10.5/6.x) Intel.
Thanks,
Stefano
Messaggio originale
Da: ayend...@nmr.mgh.harvard.edu
Data: 27-gen-2013 19.36
A: std...@virgilio.it
Cc: freesurfer@nmr.mgh.harvard.edu
Ogg: Re: [Freesurfer] TRACULA
Hi Stefano - The -prep option doesn't take an argument. Please run
trac-all with no arguments to see usage info.
a.y
Hi list,
I'm trying to run a test subject with TRACULA.
I placed a folder in /Applications/freesurfer/subject/subject_prova
which
contains these files: data.nii.gz (DWI), bvals and bvecs (as used in
previous FSL analysis) and T1-images.in
/Applications/freesurfer/subject/subject_prova
This is the command that I'm running:[iMac-di-Stefano:~] Stefano%
trac-all
-prep $FREESURFER_HOME/subjects/subject_prova/CON_01 --i
$FREESURFER_HOME/subjects/subject_prova
ERROR: flag
/Applications/freesurfer/subjects/subject_prova/CON_01unrecognized-prep
/Applications/freesurfer/subjects/subject_prova/CON_01 --i
/Applications/freesurfer/subjects/subject_prova
Please, give me an help.
Thanks in advance,
Stefano ___
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