Thank you very much for you kindness Anastasia.
The folder that contains .nii.gz file is correct?I'm looking the recommended
trac-all update. Where can I put it?
Stefano
----Messaggio originale----
Da: ayend...@nmr.mgh.harvard.edu
Data: 28-gen-2013 16.45
A: <std...@virgilio.it>
Cc: <freesurfer@nmr.mgh.harvard.edu>
Ogg: Re: [Freesurfer] R: R: Re: TRACULA
Hi Stefano - The argument of the -c option is a configuration file, not a
directory. For more info on trac-all and setting up the configuration
file, please see the trac-all wiki page:
http://www.freesurfer.net/fswiki/trac-all
and tracula tutorials:
http://www.freesurfer.net/fswiki/FsTutorial/Tracula
a.y
On Mon, 28 Jan 2013, std...@virgilio.it wrote:
> Hi and thank you very much for your availability.
> Now, I'm running tracula as following:
>
> trac-all -prep -c /Applications/freesurfer/subjects/subject_prova/CON_01
>
> my CON_01 forder contains: data.nii.gz (DWI), bvals and bvecs (as used in
> > previous FSL analysis) and T1-images.nii.gz. File.niii.gz are the same
> that I have previously used in FSL analysis.
>
> Please, my questions are:
> a- Are correct the command and the files (dyrectory positioning and their
> extensions)?
> b- Now my computer seem to running but after 1 h from the start, I visualize
> on my desktop this message "Your Mac 0SX has no more space available for
> application memory".
> My pc is a iMAC OS X Mountain Lion. 2.7 GHz Intel Core i5; 8GB 1600 MHz
> DDR3; NVIDIA GeForce DT640M 512 MB; 762,42 GB are free on a total of 999,35
> I have download the package for (Snow)Leopard (10.5/6.x) Intel.
>
> Thanks,
>
>
> Stefano
>
>
> ----Messaggio originale----
> Da: ayend...@nmr.mgh.harvard.edu
> Data: 27-gen-2013 19.36
> A: <std...@virgilio.it>
> Cc: <freesurfer@nmr.mgh.harvard.edu>
> Ogg: Re: [Freesurfer] TRACULA
>
> Hi Stefano - The -prep option doesn't take an argument. Please run
> trac-all with no arguments to see usage info.
>
> a.y
>
> > Hi list,
> > I'm trying to run a test subject with TRACULA.
> > I placed a folder in /Applications/freesurfer/subject/subject_prova which
> > contains these files: data.nii.gz (DWI), bvals and bvecs (as used in
> > previous FSL analysis) and T1-images.in
> > /Applications/freesurfer/subject/subject_prova
> > This is the command that I'm running:[iMac-di-Stefano:~] Stefano% trac-all
> > -prep $FREESURFER_HOME/subjects/subject_prova/CON_01 --i
> > $FREESURFER_HOME/subjects/subject_prova
> > ERROR: flag
> > /Applications/freesurfer/subjects/subject_prova/CON_01unrecognized-prep
> > /Applications/freesurfer/subjects/subject_prova/CON_01 --i
> > /Applications/freesurfer/subjects/subject_prova
> > Please, give me an help.
> >
> > Thanks in advance,
> >
> > Stefano _______________________________________________
> > Freesurfer mailing list
> > Freesurfer@nmr.mgh.harvard.edu
> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the
> e-mail
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
>
>
>
>
>
>_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
