Thanks but permission denied persist.
>Messaggio originale
>Da: gr...@nmr.mgh.harvard.edu
>Data: 21-dic-2015 17.33
>A: <freesurfer@nmr.mgh.harvard.edu>
>Ogg: Re: [Freesurfer] R: R: Re: R: Re: FDR in FS-FAST
>
>
>Try this version for mac
>ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_fdr.
osx
>
>Use mri_surfcluster (or mri_volcluster) to do the clustering
>
>
>On 12/18/2015 05:11 PM, std...@virgilio.it wrote:
>> I have run
>> mri_fdr --help
>> but I obtained this warning:
>> /Applications/freesurfer/bin/mri_fdr: Permission denied.
>>
>> I would also ask you if is possible to threshold the FDR map (p<0.
>> 05),
>> eliminating clusters < 5 voxels.
>>
>> Thanks
>>
>>
>> Stefano
>>
>>
>>
>>>> ----Messaggio originale
>>>> Da: gr...@nmr.mgh.harvard.edu
>>>> Data: 11-dic-2015 20.23
>>>> A: <freesurfer@nmr.mgh.harvard.edu>
>>>> Ogg: Re: [Freesurfer] R: Re: FDR in FS-FAST
>>>>
>>>> $FREESURFER_HOME/bin
>>>>
>>>> On 12/11/15 2:08 PM, std...@virgilio.it wrote:
>>>>> Thanks, in which folder I should put this file?
>>>>>
>>>>> Stefano
>>>>>
>>>>>
>>>>>> Messaggio originale
>>>>>> Da: gr...@nmr.mgh.harvard.edu
>>>>>> Data: 7-dic-2015 19.23
>>>>>> A: <freesurfer@nmr.mgh.harvard.edu>
>>>>>> Ogg: Re: [Freesurfer] FDR in FS-FAST
>>>>>>
>>>>>>
>>>>>>
>>>>>> On 12/07/2015 08:35 AM, std...@virgilio.it wrote:
>>>>>>> Hi list,
>>>>>>> I have two concerns, please:
>>>>>>> 1) It is possible to apply FDR correction on rs-fMRI seed
based
>>>>>>> analysis by FS-FAST? If yes, I can I do it?
>>>>>> try this binary
>>>>>> ftp://surfer.nmr.mgh.harvard.
>>> edu/transfer/outgoing/flat/greve/mri_fdr
>>>>>>> 2) I have apply the FS guidelines and I have used Montecarlo
>>>>>>> correction with threshold at 1.3 but in the within group
>> analysis
>>>>> the
>>>>>>> clusters are very large. In the guide I read examples with a
>>>>> threshold
>>>>>>> at 3. Is there a specific reason?
>>>>>> There is not a hard-and-fast criteria for the voxel-wise
>>> threshold. 3
>>>>> is
>>>>>> fine as is 1.3
>>>>>>> Thanks
>>>>>>>
>>>>>>> Stefano
>>>>>>>
>>>>>>>
>>>>>>> ___
>>>>>>> Freesurfer mailing list
>>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>> --
>>>>>> Douglas N. Greve, Ph.D.
>>>>>> MGH-NMR Center
>>>>>> gr...@nmr.mgh.harvard.edu
>>>>>> Phone Number: 617-724-2358
>>>>>> Fax: 617-726-7422
>>>>>>
>>>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>>>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>>>>>> Outgoing: ftp://surfer.nmr.mgh.harvard.
>>>>> edu/transfer/outgoing/flat/greve/
>>>>>> ___
>>>>>> Freesurfer mailing list
>>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>>
>>>>>>
>>>>>> The information in this e-mail is intended only for the person
to
>>>>> whom it is
>>>>>> addressed. If you believe this e-mail was sent to you in error
>> and
>>>>> the e-mail
>>>>>> contains patient information, please contact the Partners
>>> Compliance
>>>>> HelpLine at
>>>>>> http://www.partners.org/complianceline . If the e-mail was sent
>> to
>>>>> you in error
>>>>>> but does not contain patient information, please contact the
>>> sender
>>>>> and properly
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>>>>>>
>>>>>>
>>>>> ___
>>>>> Freesurfer mailing list
>>>>> Freesurfer@nmr.mgh.harvard.edu
>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>>
>>>>>
>>>> ___
>>>> Freesurfer mailing list
>>>> Freesurfer@nmr.mgh.harvard.edu
>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>>
>>> ___
>>> Freesurfer mailing list
>>> Freesurfer@nmr.mgh.harvard.edu
>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>>
>> ___
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>>
>
>--
>Douglas N. Greve, Ph.D.
>MGH-NMR Center
>gr...@nmr.mgh.harvard.edu
>Phone Number: 617-724-2358
>Fax: 617-726-7422
>
>Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>Outgoing: ftp://surfer.nmr.mgh.harvard.
edu/transfer/outgoing/flat/greve/
>
>___
>Freesurfer mailing list
>Freesurfer@nmr.mgh.harvard.edu
>https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
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