Thanks but permission denied persist.
>----Messaggio originale---- >Da: gr...@nmr.mgh.harvard.edu >Data: 21-dic-2015 17.33 >A: <freesurfer@nmr.mgh.harvard.edu> >Ogg: Re: [Freesurfer] R: R: Re: R: Re: FDR in FS-FAST > > >Try this version for mac >ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_fdr. osx > >Use mri_surfcluster (or mri_volcluster) to do the clustering > > >On 12/18/2015 05:11 PM, std...@virgilio.it wrote: >> I have run >> mri_fdr --help >> but I obtained this warning: >> /Applications/freesurfer/bin/mri_fdr: Permission denied. >> >> I would also ask you if is possible to threshold the FDR map (p<0. >> 05), >> eliminating clusters < 5 voxels. >> >> Thanks >> >> >> Stefano >> >> >> >>>> ----Messaggio originale---- >>>> Da: gr...@nmr.mgh.harvard.edu >>>> Data: 11-dic-2015 20.23 >>>> A: <freesurfer@nmr.mgh.harvard.edu> >>>> Ogg: Re: [Freesurfer] R: Re: FDR in FS-FAST >>>> >>>> $FREESURFER_HOME/bin >>>> >>>> On 12/11/15 2:08 PM, std...@virgilio.it wrote: >>>>> Thanks, in which folder I should put this file? >>>>> >>>>> Stefano >>>>> >>>>> >>>>>> ----Messaggio originale---- >>>>>> Da: gr...@nmr.mgh.harvard.edu >>>>>> Data: 7-dic-2015 19.23 >>>>>> A: <freesurfer@nmr.mgh.harvard.edu> >>>>>> Ogg: Re: [Freesurfer] FDR in FS-FAST >>>>>> >>>>>> >>>>>> >>>>>> On 12/07/2015 08:35 AM, std...@virgilio.it wrote: >>>>>>> Hi list, >>>>>>> I have two concerns, please: >>>>>>> 1) It is possible to apply FDR correction on rs-fMRI seed based >>>>>>> analysis by FS-FAST? If yes, I can I do it? >>>>>> try this binary >>>>>> ftp://surfer.nmr.mgh.harvard. >>> edu/transfer/outgoing/flat/greve/mri_fdr >>>>>>> 2) I have apply the FS guidelines and I have used Montecarlo >>>>>>> correction with threshold at 1.3 but in the within group >> analysis >>>>> the >>>>>>> clusters are very large. In the guide I read examples with a >>>>> threshold >>>>>>> at 3. Is there a specific reason? >>>>>> There is not a hard-and-fast criteria for the voxel-wise >>> threshold. 3 >>>>> is >>>>>> fine as is 1.3 >>>>>>> Thanks >>>>>>> >>>>>>> Stefano >>>>>>> >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Freesurfer mailing list >>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>> -- >>>>>> Douglas N. Greve, Ph.D. >>>>>> MGH-NMR Center >>>>>> gr...@nmr.mgh.harvard.edu >>>>>> Phone Number: 617-724-2358 >>>>>> Fax: 617-726-7422 >>>>>> >>>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>>> Outgoing: ftp://surfer.nmr.mgh.harvard. >>>>> edu/transfer/outgoing/flat/greve/ >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>> >>>>>> >>>>>> The information in this e-mail is intended only for the person to >>>>> whom it is >>>>>> addressed. If you believe this e-mail was sent to you in error >> and >>>>> the e-mail >>>>>> contains patient information, please contact the Partners >>> Compliance >>>>> HelpLine at >>>>>> http://www.partners.org/complianceline . If the e-mail was sent >> to >>>>> you in error >>>>>> but does not contain patient information, please contact the >>> sender >>>>> and properly >>>>>> dispose of the e-mail. >>>>>> >>>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > >-- >Douglas N. Greve, Ph.D. >MGH-NMR Center >gr...@nmr.mgh.harvard.edu >Phone Number: 617-724-2358 >Fax: 617-726-7422 > >Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >www.nmr.mgh.harvard.edu/facility/filedrop/index.html >Outgoing: ftp://surfer.nmr.mgh.harvard. edu/transfer/outgoing/flat/greve/ > >_______________________________________________ >Freesurfer mailing list >Freesurfer@nmr.mgh.harvard.edu >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
