Re: [Freesurfer] Tracula mean path
The mean path points look oriented correctly in the 5.3 stable version of Freeview. I downloaded and tested the latest dev version for my platform (freesurfer-Darwin-lion-dev.tar.gz - dated 2015-08-22), and the path points are not correct (orientation is rotated). Peggy On Tue, Sep 15, 2015 at 11:15 PM, Anastasia Yendiki < ayend...@nmr.mgh.harvard.edu> wrote: > > Hi Peggy - Dec 19 2014 sounds like it was built after the 5.3 release. Can > you try with the 5.3 version of freeview? > > a.y > > On Tue, 15 Sep 2015, Peggy Skelly wrote: > > I think it's the one that came with 5.3 stable release (but maybe not - I >> did download a dev version at one >> time, but I don't recall replacing the Freeview.app file. But my memory >> isn't what it once was ;)). I'm >> using freesurfer-Darwin-lion-stable-pub-v5.3.0. Freeview.app is 129 MB >> and it's About box says it's Version >> 1.0 Build Dec 19 2014 16:29:56. >> Peggy >> >> On Tue, Sep 15, 2015 at 5:08 PM, Anastasia Yendiki < >> ayend...@nmr.mgh.harvard.edu> wrote: >> >> Hi Peggy - Are you by any chance using the development version of >> freeview? Or are you using the >> one that came with the 5.3 release? >> >> a.y >> >> On Tue, 15 Sep 2015, Peggy Skelly wrote: >> >> HI, >> I'm looking at the mean path output from the tracula >> tutorial. I ran 'trac-all >> -stat' on the tutorial data and examined the output in >> freeview along >> with $FSLDIR/data/standard/MNI152_T1_1mm_brain.nii.gz. My mean paths >> appear to be rotated 90° relative to what they should be: >> Inline image 1 >> >> What could have gone wrong? >> >> Thanks, >> Peggy >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Tracula mean path
Hi Peggy - Dec 19 2014 sounds like it was built after the 5.3 release. Can you try with the 5.3 version of freeview? a.y On Tue, 15 Sep 2015, Peggy Skelly wrote: I think it's the one that came with 5.3 stable release (but maybe not - I did download a dev version at one time, but I don't recall replacing the Freeview.app file. But my memory isn't what it once was ;)). I'm using freesurfer-Darwin-lion-stable-pub-v5.3.0. Freeview.app is 129 MB and it's About box says it's Version 1.0 Build Dec 19 2014 16:29:56. Peggy On Tue, Sep 15, 2015 at 5:08 PM, Anastasia Yendiki wrote: Hi Peggy - Are you by any chance using the development version of freeview? Or are you using the one that came with the 5.3 release? a.y On Tue, 15 Sep 2015, Peggy Skelly wrote: HI, I'm looking at the mean path output from the tracula tutorial. I ran 'trac-all -stat' on the tutorial data and examined the output in freeview along with $FSLDIR/data/standard/MNI152_T1_1mm_brain.nii.gz. My mean paths appear to be rotated 90° relative to what they should be: Inline image 1 What could have gone wrong? Thanks, Peggy ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Tracula mean path
I think it's the one that came with 5.3 stable release (but maybe not - I did download a dev version at one time, but I don't recall replacing the Freeview.app file. But my memory isn't what it once was ;)). I'm using freesurfer-Darwin-lion-stable-pub-v5.3.0. Freeview.app is 129 MB and it's About box says it's Version 1.0 Build Dec 19 2014 16:29:56. Peggy On Tue, Sep 15, 2015 at 5:08 PM, Anastasia Yendiki < ayend...@nmr.mgh.harvard.edu> wrote: > > Hi Peggy - Are you by any chance using the development version of > freeview? Or are you using the one that came with the 5.3 release? > > a.y > > On Tue, 15 Sep 2015, Peggy Skelly wrote: > > HI, >> I'm looking at the mean path output from the tracula tutorial. I ran >> 'trac-all -stat' on the tutorial data and examined the output in >> freeview along with $FSLDIR/data/standard/MNI152_T1_1mm_brain.nii.gz. My >> mean paths appear to be rotated 90° relative to what they should be: >> Inline image 1 >> >> What could have gone wrong? >> >> Thanks, >> Peggy >> >> > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] Tracula mean path
Hi Peggy - Are you by any chance using the development version of freeview? Or are you using the one that came with the 5.3 release? a.y On Tue, 15 Sep 2015, Peggy Skelly wrote: HI, I'm looking at the mean path output from the tracula tutorial. I ran 'trac-all -stat' on the tutorial data and examined the output in freeview along with $FSLDIR/data/standard/MNI152_T1_1mm_brain.nii.gz. My mean paths appear to be rotated 90° relative to what they should be: Inline image 1 What could have gone wrong? Thanks, Peggy ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
