The mean path points look oriented correctly in the 5.3 stable version of Freeview. I downloaded and tested the latest dev version for my platform (freesurfer-Darwin-lion-dev.tar.gz - dated 2015-08-22), and the path points are not correct (orientation is rotated).
Peggy On Tue, Sep 15, 2015 at 11:15 PM, Anastasia Yendiki < ayend...@nmr.mgh.harvard.edu> wrote: > > Hi Peggy - Dec 19 2014 sounds like it was built after the 5.3 release. Can > you try with the 5.3 version of freeview? > > a.y > > On Tue, 15 Sep 2015, Peggy Skelly wrote: > > I think it's the one that came with 5.3 stable release (but maybe not - I >> did download a dev version at one >> time, but I don't recall replacing the Freeview.app file. But my memory >> isn't what it once was ;)). I'm >> using freesurfer-Darwin-lion-stable-pub-v5.3.0. Freeview.app is 129 MB >> and it's About box says it's Version >> 1.0 Build Dec 19 2014 16:29:56. >> Peggy >> >> On Tue, Sep 15, 2015 at 5:08 PM, Anastasia Yendiki < >> ayend...@nmr.mgh.harvard.edu> wrote: >> >> Hi Peggy - Are you by any chance using the development version of >> freeview? Or are you using the >> one that came with the 5.3 release? >> >> a.y >> >> On Tue, 15 Sep 2015, Peggy Skelly wrote: >> >> HI, >> I'm looking at the mean path output from the tracula >> tutorial. I ran 'trac-all >> -stat' on the tutorial data and examined the output in >> freeview along >> with $FSLDIR/data/standard/MNI152_T1_1mm_brain.nii.gz. My mean paths >> appear to be rotated 90° relative to what they should be: >> Inline image 1 >> >> What could have gone wrong? >> >> Thanks, >> Peggy >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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