Re: [Freesurfer] control points from cross transferred to long
Hi P, if you want to investigate the control.dat file you can do so with freeview (File-> Load Point Set and choose the control.dat file). In the dev version of Freeview there is an option to select a cp number or move through the list with arrows. In the stable version, there is no box, but you would still see the CP as white dots when scrolling through the brain. If you transfer the CP from cross, usually they should be accurately placed in the long, so a quick check is usually fine. Best, Martin > On Aug 18, 2015, at 8:23 AM, prasser wrote: > > > Hi, > > On this page https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalEdits it > mentions "it is recommended to check if all CPs are accurately placed in the > long." > > I was wondering what is the best way to do this? > > I know I can type in the RAS coordinates from the control.dat file and check > each one this way, but this seems a little tedious and prone to errors > especially as I can't paste into tkmedit. > > Also, is there a command that can get the intensity from brainmask.mgz from a > given RAS coordinate? > > > Thanks > > P > > ___ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] control points from cross transferred to long
In the dev version of freeview, you can go to File ->Load Point set, and choose the control point file (shoulb be /tmp/control.dat) This allows you to flip through the points by entering the control point number or using an arrow to go to the next/previous control point in the file. This moves the cursor to the control point (which shows up as a green dot by default). You can also do the same thing to load them in the stable version of freeview, but there is no box to enter a control point number. If you move through the brain, you will see the control points as dots. Best, Lee On Mon, 17 Aug 2015, prasser wrote: Hi, On this page https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalEdits it mentions "it is recommended to check if all CPs are accurately placed in the long." I was wondering what is the best way to do this? I know I can type in the RAS coordinates from the control.dat file and check each one this way, but this seems a little tedious and prone to errors especially as I can't paste into tkmedit. Also, is there a command that can get the intensity from brainmask.mgz from a given RAS coordinate? Thanks P ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
[Freesurfer] control points from cross transferred to long
Hi, On this page https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalEdits it mentions "it is recommended to check if all CPs are accurately placed in the long." I was wondering what is the best way to do this? I know I can type in the RAS coordinates from the control.dat file and check each one this way, but this seems a little tedious and prone to errors especially as I can't paste into tkmedit. Also, is there a command that can get the intensity from brainmask.mgz from a given RAS coordinate? Thanks P ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
