This is a bug. I've put a new version of mri_annotation2label here:
https://gate.nmr.mgh.harvard.edu/safelinks/greve/
username 'guest'
password 'collab'
copy it into $FREESUFER/bin (after making a copy of the one that is there).
On 11/22/2021 12:23 PM, Dr. Cornelius Kronlage wrote:
> External Email - Use Caution
>
> Dear freesurfer community,
>
> when trying to obtain lobe labels for fsaverage_sym, mri_annotation2label
> segfaults - see terminal output below. It works smoothly for fsaverage and
> any other subjects. Is there any workaround?
>
>> mri_annotation2label --subject fsaverage_sym --hemi lh --lobes
>> fsaverage_sym_lh.lobes.annot
> subject = fsaverage_sym
> annotation = aparc
> hemi = lh
> surface = white
>
> Reading surface
> /home/ckronlage/epi/DATA/tmp4_working//fsaverage_sym/surf/lh.white
> Loading annotations from
> /home/ckronlage/epi/DATA/tmp4_working//fsaverage_sym/label/lh.aparc.annot
> reading colortable from annotation file...
> colortable with 1036 entries read (originally
> /scratch/tmpdir.annot2std.28231/seg.1.073.xhemi.ctab)
> Seg base 1000
> MRISmergeAnnotations: parcCount=10, newparcname=frontal
> mri_annotation2 supposed to be reproducible but seed not set
> Segmentation fault (core dumped)
> Thank you and
> best wishes
> Cornelius
>
>
>
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