This is a bug. I've put a new version of mri_annotation2label here: https://gate.nmr.mgh.harvard.edu/safelinks/greve/ username 'guest' password 'collab'
copy it into $FREESUFER/bin (after making a copy of the one that is there). On 11/22/2021 12:23 PM, Dr. Cornelius Kronlage wrote: > External Email - Use Caution > > Dear freesurfer community, > > when trying to obtain lobe labels for fsaverage_sym, mri_annotation2label > segfaults - see terminal output below. It works smoothly for fsaverage and > any other subjects. Is there any workaround? > >> mri_annotation2label --subject fsaverage_sym --hemi lh --lobes >> fsaverage_sym_lh.lobes.annot > subject = fsaverage_sym > annotation = aparc > hemi = lh > surface = white > > Reading surface > /home/ckronlage/epi/DATA/tmp4_working//fsaverage_sym/surf/lh.white > Loading annotations from > /home/ckronlage/epi/DATA/tmp4_working//fsaverage_sym/label/lh.aparc.annot > reading colortable from annotation file... > colortable with 1036 entries read (originally > /scratch/tmpdir.annot2std.28231/seg.1.073.xhemi.ctab) > Seg base 1000 > MRISmergeAnnotations: parcCount=10, newparcname=frontal > mri_annotation2 supposed to be reproducible but seed not set > Segmentation fault (core dumped) > Thank you and > best wishes > Cornelius > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://www.massgeneralbrigham.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
