What do you mean you only get one vertex for the medial wall? Can you
send the make_average_{subject,surface,volume}.log files (located in the
scripts folder of the average subject)
On 11/22/2017 05:01 AM, M del Mar Velasco wrote:
>
> Dear Freesurfer experts,
>
>
> I have a question related to /make_average_subject/ command and
> Freesurfer versions.
>
> When I used to create my average subject with Freesurfer 5.3, I got
> /lh.cortex.label/ and /rh.cortex.label/ files inside /label /folder
> with 149955 vertexs. Moreover,/ lh.Medial_Wall.label/ and
> /rh.Medial_Wall.label/ had 13887 vertexs.
>
>
> However, with new Freesurfer 6, I get 163841 vertexs for cortex and
> only one vertex for medial wall. That's why I have problems with
> /mri_glmfit/ when I use rh or lh.cortex.label files as label mask. I
> am considering all vertexs, and I would like to use only real cortex
> vertexs.
>
>
> Are label files outputs from /make_average_subject/ wrong? How can I
> fit this problem?
>
>
> Thanks in advance,
>
>
> M del Mar
>
>
>
> ___
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
___
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
