Hi Fidel
How do you know it is wrong? Have you looked at the minc and the nifti in
freeview?
Cheers
Bruce
> On Aug 15, 2015, at 10:19 PM, Schumman Resonance wrote:
>
> Hi freesurfers,
>
> I want to convert minc files to nii to work with them in ITK-SNAP
> segmentation software.
>
> I have used mri_convert binary, but the orientation on the nii images is
> completely wonky. Any advice in terms of how to use the --in_orientation
> --out_orientation flags? Reading the documentation on
> the FS wiki emphasizes how important is to get this right.
>
> Any pointers will be much appreciate it.
>
> Thanks,
>
> Fidel
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