Re: [Freesurfer] recon-all Workflow Help

[Greve, Douglas N.,Ph.D.]

Sorry Riya, you have to run it all.
doug

On 3/3/19 11:36 AM, Riya Chatterjee wrote:
>
> External Email - Use Caution
>
> Hi,
>
> I am new to FreeSurfer - I am a high school sophomore trying to learn 
> more about processing brain MRI's. I have read through most of the 
> documentation, but I was not sure about the workflow for processing an 
> MRI. I am trying to extract just surfaces and was wondering if I can 
> run "recon-all -autorecon2 -pial..." without running "recon-all 
> -all...". Basically, I'm trying to see if I need to run the "recon-all 
> -all..." step before running any of the sub-processes. I would greatly 
> appreciate any advice I could get on this, thanks.
>
> Thanks,
> Riya C
>
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[Freesurfer] recon-all Workflow Help

[Riya Chatterjee]

External Email - Use Caution

Hi,

I am new to FreeSurfer - I am a high school sophomore trying to learn more
about processing brain MRI's. I have read through most of the
documentation, but I was not sure about the workflow for processing an MRI.
I am trying to extract just surfaces and was wondering if I can run
"recon-all -autorecon2 -pial..." without running "recon-all -all...".
Basically, I'm trying to see if I need to run the "recon-all -all..." step
before running any of the sub-processes. I would greatly appreciate any
advice I could get on this, thanks.

Thanks,
Riya C
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