Sorry Riya, you have to run it all. doug On 3/3/19 11:36 AM, Riya Chatterjee wrote: > > External Email - Use Caution > > Hi, > > I am new to FreeSurfer - I am a high school sophomore trying to learn > more about processing brain MRI's. I have read through most of the > documentation, but I was not sure about the workflow for processing an > MRI. I am trying to extract just surfaces and was wondering if I can > run "recon-all -autorecon2 -pial..." without running "recon-all > -all...". Basically, I'm trying to see if I need to run the "recon-all > -all..." step before running any of the sub-processes. I would greatly > appreciate any advice I could get on this, thanks. > > Thanks, > Riya C > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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