They should be there. Can you send recon-all.log and conf2hires.log files?
On 5/20/19 9:59 AM, Bruce Fischl wrote:
> Hi Victor
>
> the lh.white.{KH} are generated from the lh.white file, so I don't
> think it can have skipped creating it. Was it deleted? Can you double
> check?
>
> Bruce
> On Mon, 20 May 2019, Zeng,Victor (BIDMC - Psychiatry) wrote:
>
>>
>> Hi all,
>>
>>
>> I am running 7T scans through FS6, and I have been recommended to
>> install the tools
>> in ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0-patch/hcp/
>> . So I ran the new
>> recon-all.v6.hires, specifically with the command "recon-all.hires.v6
>> -s subj -conf2hires -all"
>>
>>
>> For the most part, it ran, but I while QCing, it couldn't seem to
>> load the surfs files. Recon-all
>> seemed to have generated files called ?h.white.H and ?h.white.K, but
>> apparently skipped the steps
>> for ?h.white? I don't think I can load the surfs files without it,
>> and I don't know if this is
>> intentional.
>>
>>
>> Victor Zeng
>> Beth Israel Deaconess Medical Center
>> Keshavan Lab
>> --
>>
>>
>>
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