Re: [Freesurfer] Surface-based Interhemispheric Registration : Compare left vs. right patients

2015-08-21 Thread Matthieu Vanhoutte
xhemireg seems to create e.g. left symmetric surface of the right normal
one. Once xhemi/surf/lh.pial has been created and surface data
surf/rh.overlay.mgh copied into xhemi/surf/lh.overlay.mgh, why don't
register surf/lh.overlay.mgh and xhemi/surf/lh.overlay onto fsaverage
lh.pial surface ?

Best regards,

Matthieu
Le 21 août 2015 19:49, Douglas Greve gr...@nmr.mgh.harvard.edu a écrit :


 Sorry, what is the problem? Is sounds like xhemi should be apprpriate for
 your application.  fsaverage is not symmetric and will lead to biased
 results.

 On 8/20/15 9:27 AM, Matthieu Vanhoutte wrote:

 Dear FS experts,

 I have shown in mailing list and xhemi commands as explained here, a
 beginning of a solution to my problem :

 http://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi

 However, I didn't understand all the steps needed in may case. I have
 patients with unilateralized problem on left or right hemisphere. But, I
 would like to statistically compare left vs right hemisphere groups. So, I
 think xhemi should help me to register for example both hemispheres of my
 right lateralized patients onto symmetrical template ?

 I have already registered my surface data of all patients on fsaverage
 template. Couldn't it be possible to apply Xhemi transformation on
 fsaverage surface data of all right lateralized patients ? What are the
 steps to do it ?

 Many thanks in advance for helping !

 Best regards,

 Matthieu


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Re: [Freesurfer] Surface-based Interhemispheric Registration : Compare left vs. right patients

2015-08-21 Thread Douglas Greve



On 8/21/15 3:47 PM, Matthieu Vanhoutte wrote:


xhemireg seems to create e.g. left symmetric surface of the right 
normal one. Once xhemi/surf/lh.pial has been created and surface data 
surf/rh.overlay.mgh copied into xhemi/surf/lh.overlay.mgh,


Yes, both the lh and the rh are registered to the lh symmetric surface. 
Though it has an lh designation, the hemi is meaningless because it 
symmetric. Why does this not work for your data?


why don't register surf/lh.overlay.mgh and xhemi/surf/lh.overlay onto 
fsaverage lh.pial surface ?



because fsaverage is not symmetric.


Best regards,

Matthieu

Le 21 août 2015 19:49, Douglas Greve gr...@nmr.mgh.harvard.edu 
mailto:gr...@nmr.mgh.harvard.edu a écrit :



Sorry, what is the problem? Is sounds like xhemi should be
apprpriate for your application.  fsaverage is not symmetric and
will lead to biased results.

On 8/20/15 9:27 AM, Matthieu Vanhoutte wrote:

Dear FS experts,

I have shown in mailing list and xhemi commands as explained
here, a beginning of a solution to my problem :
http://surfer.nmr.mgh.harvard.edu/fswiki/Xhemi

However, I didn't understand all the steps needed in may case. I
have patients with unilateralized problem on left or right
hemisphere. But, I would like to statistically compare left vs
right hemisphere groups. So, I think xhemi should help me to
register for example both hemispheres of my right lateralized
patients onto symmetrical template ?

I have already registered my surface data of all patients on
fsaverage template. Couldn't it be possible to apply Xhemi
transformation on fsaverage surface data of all right lateralized
patients ? What are the steps to do it ?

Many thanks in advance for helping !

Best regards,

Matthieu


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The information in this e-mail is intended only for the person to
whom it is
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the e-mail
contains patient information, please contact the Partners
Compliance HelpLine at
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but does not contain patient information, please contact the
sender and properly
dispose of the e-mail.



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The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
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dispose of the e-mail.