Re: [Freesurfer] TRACULA and CVS space
Hi Antonella, We've not released CVS template /Priors for tracula yet. You can only use MNI template for tracula now. We're still testing CVS. Thanks, Priti Hi, I would like to know if for a probabilistic tractrography using TRACULA I can use the CVS space as a common template to register the diffusion data instead of MNI template. How I should change for the CVS space the following: set doregmni = 1 which is the default for the MNI space. If I want to use both MNI template and CVS template for comparison purposeshow this can be done? THANKS. Antonella___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] TRACULA and CVS space
Note that tracula doesn't extract from the atlas the exact spatial location of the tracts. It only extracts which anatomical labels are the neighbors of the tract at each point along its trajectory. So it's not as sensitive to misregistration as a voxel-based analysis would be. Our paper discusses all this: http://www.frontiersin.org/Neuroinformatics/10.3389/fninf.2011.00023/abstract On Thu, 29 Mar 2012, Antonella Kis wrote: Hi, I would like to know if for a probabilistic tractrography using TRACULA I can use the CVS space as a common template to register the diffusion data instead of MNI template. How I should change for the CVS space the following: set doregmni = 1 which is the default for the MNI space. If I want to use bo th MNI template and CVS template for comparison purposes how this can be don e? THANKS. Antonella ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
