Re: [Freesurfer] freeview load overlay error...
Hi Gonzalo, I've replaced overlay reading code with a more generous one. You can give it a try tomorrow with the nightly built dev version. Best, Ruopeng On 11/18/2010 02:18 PM, Gonzalo Rojas Costa wrote: > Dear Dr. Wang: > > I got the message: > > "mris_info zstat3_rh.w > nquads=8321536, nvertices=2 > ERROR: MRISread: file 'zstat3_rh.w' has many more faces than vertices! > Probably trying to use a scalar data file as a surface! > > No such file or directory" > > Sincerely, > > > Gonzalo Rojas Costa > Laboratory for Advanced Medical Image Processing > Department of Radiology > Las Condes Clinic > Lo Fontecilla 441, Las Condes, Santiago, Chile. > Tel: 56-2-2105170 > Cel: 56-9-97771785 > www.clc.cl > > > El 18-11-2010 15:57, Gonzalo Rojas escribió: > > Message: 4 > > Date: Mon, 15 Nov 2010 09:36:17 -0500 > > From: Ruopeng Wang > > Subject: Re: [Freesurfer] freeview load overlay error... > > To: freesurfer@nmr.mgh.harvard.edu > > > > What does mris_info show on the overlay file? > > > > On 11/14/10 11:08 PM, Gonzalo Rojas Costa wrote: > >> Hi: > >> > >>I generated a surface with: > >> > >> mri_vol2surf --src zstat3.nii.gz --src_type nifti --srcreg > >> ../registro.dat > >> --hemi lh --projfrac 0.5 --out ./zstat3_lh.w --out_type w > >> > >> then I tried to load zstat3_lh.w using freeview, but I got the error: > >> > >> "MRISreadBinaryCurvature: incompatible vertex number in file > >> > /home/gonzalorojas/Desktop/rendering_broca_wernicke_paper/diestroBL_cov/zstat3_lh.w > > > >> > >> could not read overlay data from > >> > /home/gonzalorojas/Desktop/rendering_broca_wernicke_paper/diestroBL_cov/zstat3_lh.w" > > > >> > >> > >>Why ?... How can I solve the problem ?... > >> > >>Sincerely, > >> > >> > >> Gonzalo ROjas Costa > >> > >> > >> ___ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] freeview load overlay error...
Dear Dr. Wang: I got the message: "mris_info zstat3_rh.w nquads=8321536, nvertices=2 ERROR: MRISread: file 'zstat3_rh.w' has many more faces than vertices! Probably trying to use a scalar data file as a surface! No such file or directory" Sincerely, Gonzalo Rojas Costa Laboratory for Advanced Medical Image Processing Department of Radiology Las Condes Clinic Lo Fontecilla 441, Las Condes, Santiago, Chile. Tel: 56-2-2105170 Cel: 56-9-97771785 www.clc.cl El 18-11-2010 15:57, Gonzalo Rojas escribió: > Message: 4 > Date: Mon, 15 Nov 2010 09:36:17 -0500 > From: Ruopeng Wang > Subject: Re: [Freesurfer] freeview load overlay error... > To: freesurfer@nmr.mgh.harvard.edu > > What does mris_info show on the overlay file? > > On 11/14/10 11:08 PM, Gonzalo Rojas Costa wrote: >> Hi: >> >>I generated a surface with: >> >> mri_vol2surf --src zstat3.nii.gz --src_type nifti --srcreg >> ../registro.dat >> --hemi lh --projfrac 0.5 --out ./zstat3_lh.w --out_type w >> >> then I tried to load zstat3_lh.w using freeview, but I got the error: >> >> "MRISreadBinaryCurvature: incompatible vertex number in file >> /home/gonzalorojas/Desktop/rendering_broca_wernicke_paper/diestroBL_cov/zstat3_lh.w >> >> could not read overlay data from >> /home/gonzalorojas/Desktop/rendering_broca_wernicke_paper/diestroBL_cov/zstat3_lh.w" >> >> >>Why ?... How can I solve the problem ?... >> >>Sincerely, >> >> >> Gonzalo ROjas Costa >> >> >> ___ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Re: [Freesurfer] freeview load overlay error...
What does mris_info show on the overlay file? On 11/14/10 11:08 PM, Gonzalo Rojas Costa wrote: Hi: I generated a surface with: mri_vol2surf --src zstat3.nii.gz --src_type nifti --srcreg ../registro.dat --hemi lh --projfrac 0.5 --out ./zstat3_lh.w --out_type w then I tried to load zstat3_lh.w using freeview, but I got the error: "MRISreadBinaryCurvature: incompatible vertex number in file /home/gonzalorojas/Desktop/rendering_broca_wernicke_paper/diestroBL_cov/zstat3_lh.w could not read overlay data from /home/gonzalorojas/Desktop/rendering_broca_wernicke_paper/diestroBL_cov/zstat3_lh.w" Why ?... How can I solve the problem ?... Sincerely, Gonzalo ROjas Costa ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer ___ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
