[galaxy-dev] FTP UPLOAD
Dear all, I've a question about FTP upload of data. The data uploaded via ftp are placed in the directory ftp_upload_dir defined in universe_wgsi.uni After the uploading, when a user select the data to import in its history, galaxy copy the file in the dir file_path (defined in universe_wgsi.uni). In this manner we have two copy of the same file, and with NGS data this not the best solution... I try to set the ftp_upload_dir and the file_path with the same path but galaxy copy the file in a dir called 000. In my ftp_upload_dir / file_path so I have: - us...@mail.com - us...@mail.com - 000 How can I avoid this duplication ? All the Best Alessandro -- ** Alessandro Albiero Bioinformatics Lab CRIBI-Padua University Viale G. Colombo, 3 35121 Padova-Italy http://genomics.cribi.unipd.it http://genomics.cribi.unipd.it/index.php/User:Albiero Phone. +39. 049 827-6165 Fax. +39. 049 827-6159 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Possible to browse local filesystem
Dear all, I have a problem with galaxy and I have already tried to write on ther user list My problem concern the upload on galaxy of new files. We are setting up a galaxy istance on our server (HPC Cluster with torque and PBS) for internal use. Our problem is that we manage only NGS data (SOLiD and Illumina Data) that are already stored on the server. We tried to set up the user directory in the universe_wgsi.ini file to allow to any user tu upload their local files, but adding new file and re-uploading the dir we found duplicated files (it seems that galaxy re-upload every time all the files ignoring if some are already present). This method is OK for us but how can we avoid the file duplications ? In a presentation found on web (blankenberg_pittsburg_2001), we saw that there is the possibility to automatically upload the sequenced reads on Galaxy (and let them available to all our user). Where can we find information for doing this ? Thank in advance All the best Alessandro -- ** Alessandro Albiero Bioinformatics Lab CRIBI-Padua University Viale G. Colombo, 3 35121 Padova-Italy http://genomics.cribi.unipd.it http://genomics.cribi.unipd.it/index.php/User:Albiero Phone. +39. 049 827-6165 Fax. +39. 049 827-6159 ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
