Re: [galaxy-dev] Is there any timeout in Galaxy
On Nov 15, 2012, at 12:17 PM, Jennifer Jackson wrote: Hi Akshay, Please post all technical questions directly to the galaxy-dev mailing list. I'm sure we'll be able to help out shortly, Jen Galaxy team http://wiki.galaxyproject.org/Support#Mailing_Lists Hello, My name is Akshay and I am a computer science graduate student at UGA in Dr. Kissinger's Lab. We have created an extension to galaxy which allowed users to add web services as tools into galaxy, these could be either used as stand-alone or in a workflow. I wanted to know if Galaxy employs any time out strategy. Consider a case where I have a workflow with BLASTP now it takes some time to run blast and then get result form it. When I try that experiment as standalone (i.e., running the run method first and then after several mins getting result using job id works) however when I create a workflow in which one tool being run method of blast followed by getresult, galaxy seems to time out. Would appreciate your feedback on the same. Hi Akshay, Galaxy itself doesn't have a timeout, but often the proxy server does. If Galaxy takes too long to respond to a request (some requests block, such as creation of complex workflows), a timeout may be reported to the client. Galaxy typically finishes the request behind the scenes, however. --nate -Akshay Choche ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] Is there any timeout in Galaxy
Hi Akshay, Please post all technical questions directly to the galaxy-dev mailing list. I'm sure we'll be able to help out shortly, Jen Galaxy team http://wiki.galaxyproject.org/Support#Mailing_Lists Hello, My name is Akshay and I am a computer science graduate student at UGA in Dr. Kissinger's Lab. We have created an extension to galaxy which allowed users to add web services as tools into galaxy, these could be either used as stand-alone or in a workflow. I wanted to know if Galaxy employs any time out strategy. Consider a case where I have a workflow with BLASTP now it takes some time to run blast and then get result form it. When I try that experiment as standalone (i.e., running the run method first and then after several mins getting result using job id works) however when I create a workflow in which one tool being run method of blast followed by getresult, galaxy seems to time out. Would appreciate your feedback on the same. -Akshay Choche ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] Is there any timeout in Galaxy
Hi Akshay, I don't know the answer to your question. So: 1) I went to http://galaxyproject.org/search/web/ and searched for timeout and then timeout workflow. There are lots of email threads (and I learned some stuff :-), but I didn't find a direct answer to your question. 2) I'm sending your question to the galaxy-dev list where it will be seen by hundreds of galaxy admins and tool developers. (And this thread will also be found by any future searches.) Thanks, Dave C On Thu, Nov 15, 2012 at 8:33 AM, akshaycho...@gmail.com wrote: Hello, My name is Akshay and I am a computer science graduate student at UGA in Dr. Kissinger's Lab. We have created an extension to galaxy which allowed users to add web services as tools into galaxy, these could be either used as stand-alone or in a workflow. I wanted to know if Galaxy employs any time out strategy. Consider a case where I have a workflow with BLASTP now it takes some time to run blast and then get result form it. When I try that experiment as standalone (i.e., running the run method first and then after several mins getting result using job id works) however when I create a workflow in which one tool being run method of blast followed by getresult, galaxy seems to time out. Would appreciate your feedback on the same. -Akshay Choche Graduate Research Assistant (Kissinger Research Group) Center for Tropical and Emerging Global Diseases The University of Georgia, Athens, GA - 30605 Tele: 256-520-6541 Email: acho...@uga.edu, akshaycho...@gmail.com http://www.cs.uga.edu/~choche -- http://galaxyproject.org/wiki/GCC2012http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http://wiki.galaxyproject.org/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
