The specification does not mention zip, gzip or bz2 [1] and
I am pretty confident, that it does not in addition compresses
its content with zip etc..
It starts with a header SQLite format 3\000
which is visible in my file with less.
ido
[1]http://www.sqlite.org/fileformat.html
On Dec 7, 2012, at 3:50 PM, John Chilton wrote:
Hi Ido,
Is .sqlite a common compressed file type (i.e. zip, gzip, or bz2) just
with a different extension?
If it is, I think upload.py is always going to try to decompress it.
That that has long been a behavior I would like to be able to disable
on a per file type basis. If this is the problem and the galaxy team
agrees to accept a patch for address the issue, I would be happy to
try to implement the fix.
-John
On Fri, Dec 7, 2012 at 8:39 AM, Ido Tamir ta...@imp.ac.at wrote:
from http://wiki.galaxyproject.org/Admin/Datatypes/Adding%20Datatypes
I thought that adding subclass=True in datatypes_conf.xml would be enough
to register my new
type, but it seems like I stil have to add an entry in binary.py for it to
be recognized. But its still corrupted.
thank you very much,
ido
--
Tool: Upload File
Name: hg19.sqlite
Created:Dec 07, 2012
Filesize: 11.1 MB
Dbkey: hg19
Format: sqlite
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