Re: [galaxy-dev] galaxy-cloud display data in browser broken
Isabelle Phan wrote: > Uploaded data from Biomart and the data is displayed correctly in the middle > pane. > I deleted all datasets in the history except the first one (a fastq file), > and it now displays correctly too! > > I upload a fasta file: it does not display. > > Could this be a bug with fasta data? Hi Isabelle, I'm not entirely sure what's up here, but is there a reason you're bypassing the nginx proxy running on port 80 and accessing Galaxy directly? --nate > > Isabelle > > -- > Isabelle Phan, DPhil > Seattle Biomedical Research Institute > +1(206)256 7113 > > > > -Original Message- > > From: Isabelle Phan > > Sent: Wednesday, March 09, 2011 6:21 PM > > To: 'galaxy-dev@lists.bx.psu.edu' > > Cc: Andy Leonard; Gowthaman Ramasamy > > Subject: galaxy-cloud display data in browser broken > > > > Hello, > > > > Running galaxy-cloud latest release on amazon EC2, configuration out of the > > box > > except for: > > host = 0.0.0.0 > > > > I can upload data, run tools, but when I click on the 'eye' icon to view > > the data , > > the middle panel is empty (accessing galaxy cloud from Firefox and Chrome on > > CentOS linux). > > > > I tried creating a simple fasta file. It shows fine on the right panel, but > > won't display > > in the middle panel. > > View parameters displays correctly. Only the actual data is not displayed. > > The log > > shows no error: > > > > 146.129.249.238 - - [10/Mar/2011:02:19:52 +] "GET > > /datasets/5969b1f7201f12ae/display/?preview=True HTTP/1.1" 200 - > > "http://ec2- > > xx.compute-1.amazonaws.com:8080/history?show_deleted=False" > > "Mozilla/5.0 (X11; Linux i686 (x86_64)) AppleWebKit/534.24 (KHTML, like > > Gecko) > > Chrome/11.0.697.0 Safari/534.24" > > > > Our local instance of Galaxy does not have this issue, only the cloud > > instance. > > Since this is a total blocker, any hint is *very* gratefully received, > > > > Isabelle > > > > -- > > Isabelle Phan, DPhil > > Seattle Biomedical Research Institute > > +1(206)256 7113 > > > > > ___ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > > http://lists.bx.psu.edu/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-dev] galaxy-cloud display data in browser broken
Uploaded data from Biomart and the data is displayed correctly in the middle pane. I deleted all datasets in the history except the first one (a fastq file), and it now displays correctly too! I upload a fasta file: it does not display. Could this be a bug with fasta data? Isabelle -- Isabelle Phan, DPhil Seattle Biomedical Research Institute +1(206)256 7113 > -Original Message- > From: Isabelle Phan > Sent: Wednesday, March 09, 2011 6:21 PM > To: 'galaxy-dev@lists.bx.psu.edu' > Cc: Andy Leonard; Gowthaman Ramasamy > Subject: galaxy-cloud display data in browser broken > > Hello, > > Running galaxy-cloud latest release on amazon EC2, configuration out of the > box > except for: > host = 0.0.0.0 > > I can upload data, run tools, but when I click on the 'eye' icon to view the > data , > the middle panel is empty (accessing galaxy cloud from Firefox and Chrome on > CentOS linux). > > I tried creating a simple fasta file. It shows fine on the right panel, but > won't display > in the middle panel. > View parameters displays correctly. Only the actual data is not displayed. > The log > shows no error: > > 146.129.249.238 - - [10/Mar/2011:02:19:52 +] "GET > /datasets/5969b1f7201f12ae/display/?preview=True HTTP/1.1" 200 - "http://ec2- > xx.compute-1.amazonaws.com:8080/history?show_deleted=False" > "Mozilla/5.0 (X11; Linux i686 (x86_64)) AppleWebKit/534.24 (KHTML, like Gecko) > Chrome/11.0.697.0 Safari/534.24" > > Our local instance of Galaxy does not have this issue, only the cloud > instance. > Since this is a total blocker, any hint is *very* gratefully received, > > Isabelle > > -- > Isabelle Phan, DPhil > Seattle Biomedical Research Institute > +1(206)256 7113 > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
[galaxy-dev] galaxy-cloud display data in browser broken
Hello, Running galaxy-cloud latest release on amazon EC2, configuration out of the box except for: host = 0.0.0.0 I can upload data, run tools, but when I click on the 'eye' icon to view the data , the middle panel is empty (accessing galaxy cloud from Firefox and Chrome on CentOS linux). I tried creating a simple fasta file. It shows fine on the right panel, but won't display in the middle panel. View parameters displays correctly. Only the actual data is not displayed. The log shows no error: 146.129.249.238 - - [10/Mar/2011:02:19:52 +] "GET /datasets/5969b1f7201f12ae/display/?preview=True HTTP/1.1" 200 - "http://ec2-xx.compute-1.amazonaws.com:8080/history?show_deleted=False"; "Mozilla/5.0 (X11; Linux i686 (x86_64)) AppleWebKit/534.24 (KHTML, like Gecko) Chrome/11.0.697.0 Safari/534.24" Our local instance of Galaxy does not have this issue, only the cloud instance. Since this is a total blocker, any hint is *very* gratefully received, Isabelle -- Isabelle Phan, DPhil Seattle Biomedical Research Institute +1(206)256 7113 ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
