[galaxy-dev] Re: How to resolve the dependency of self-compiled C++ programs when publishing a tool?
Hi Bjoern, Thank you for your reply. Our tool is a Bio-related package. I will follow instructions to put it in bioconda. Thank you. Best regards, Jin On Thu, Jul 11, 2019 at 2:35 AM Björn Grüning wrote: > > Hi Jin, > > if it is a Bio-related package, follow these instructions: > > https://bioconda.github.io/contributor/index.html > > For anything else these once: > > https://conda-forge.org/#contribute > > Cheers, > Bjoern > > Am 11.07.19 um 09:18 schrieb Jin Li: > > Hi Devon, > > > > Thank you for your instant reply. May I ask how could I quickly put a > > C++ program in either conda-forge or bioconda? I am new to these > > package repositories. Thank you. > > > > Best regards, > > Jin > > > > On Thu, Jul 11, 2019 at 2:03 AM Devon Ryan wrote: > >> > >> Put your tool in either conda-forge or bioconda, that will take care > >> of the issue. > >> -- > >> Devon Ryan, Ph.D. > >> Email: dpr...@dpryan.com > >> Data Manager/Bioinformatician > >> Max Planck Institute of Immunobiology and Epigenetics > >> Stübeweg 51 > >> 79108 Freiburg > >> Germany > >> > >> On Thu, Jul 11, 2019 at 8:44 AM Jin Li wrote: > >>> > >>> Hi all, > >>> > >>> I want to publish our own tool to the Galaxy Tool Shed. Our tool is > >>> our own developed C++ program. Our compiled binaries may not > >>> necessarily run in other machines due to different OS platforms. How > >>> could I resolve the tool dependency of our own compiled binaries? > >>> Thank you. > >>> > >>> Best regards, > >>> Jin > >>> ___ > >>> Please keep all replies on the list by using "reply all" > >>> in your mail client. To manage your subscriptions to this > >>> and other Galaxy lists, please use the interface at: > >>>%(web_page_url)s > >>> > >>> To search Galaxy mailing lists use the unified search at: > >>>http://galaxyproject.org/search/ > > ___ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > >%(web_page_url)s > > > > To search Galaxy mailing lists use the unified search at: > >http://galaxyproject.org/search/ > > ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
[galaxy-dev] King Skrupellos hack
Has anyone been hacked through the galaxy port 8080? We have an aberrant link on our install and I cannot find where it is hidden. The message that comes up is attached. Pat Patrick M. Gillevet, Ph.D Director, Microbiome Analysis Center Professor, Department of Biology George Mason University, Science & Technology Campus 10900 University Boulevard, MSN 4D4 Manassas, Virginia 20110 Office 703-993-1057 Room Colgan Hall-426 FAX 703-993-8430 http://mbac.gmu.edu ** ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
[galaxy-dev] Re: How to resolve the dependency of self-compiled C++ programs when publishing a tool?
Hi Jin, if it is a Bio-related package, follow these instructions: https://bioconda.github.io/contributor/index.html For anything else these once: https://conda-forge.org/#contribute Cheers, Bjoern Am 11.07.19 um 09:18 schrieb Jin Li: Hi Devon, Thank you for your instant reply. May I ask how could I quickly put a C++ program in either conda-forge or bioconda? I am new to these package repositories. Thank you. Best regards, Jin On Thu, Jul 11, 2019 at 2:03 AM Devon Ryan wrote: Put your tool in either conda-forge or bioconda, that will take care of the issue. -- Devon Ryan, Ph.D. Email: dpr...@dpryan.com Data Manager/Bioinformatician Max Planck Institute of Immunobiology and Epigenetics Stübeweg 51 79108 Freiburg Germany On Thu, Jul 11, 2019 at 8:44 AM Jin Li wrote: Hi all, I want to publish our own tool to the Galaxy Tool Shed. Our tool is our own developed C++ program. Our compiled binaries may not necessarily run in other machines due to different OS platforms. How could I resolve the tool dependency of our own compiled binaries? Thank you. Best regards, Jin ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
[galaxy-dev] Re: How to resolve the dependency of self-compiled C++ programs when publishing a tool?
Hi Devon, Thank you for your instant reply. May I ask how could I quickly put a C++ program in either conda-forge or bioconda? I am new to these package repositories. Thank you. Best regards, Jin On Thu, Jul 11, 2019 at 2:03 AM Devon Ryan wrote: > > Put your tool in either conda-forge or bioconda, that will take care > of the issue. > -- > Devon Ryan, Ph.D. > Email: dpr...@dpryan.com > Data Manager/Bioinformatician > Max Planck Institute of Immunobiology and Epigenetics > Stübeweg 51 > 79108 Freiburg > Germany > > On Thu, Jul 11, 2019 at 8:44 AM Jin Li wrote: > > > > Hi all, > > > > I want to publish our own tool to the Galaxy Tool Shed. Our tool is > > our own developed C++ program. Our compiled binaries may not > > necessarily run in other machines due to different OS platforms. How > > could I resolve the tool dependency of our own compiled binaries? > > Thank you. > > > > Best regards, > > Jin > > ___ > > Please keep all replies on the list by using "reply all" > > in your mail client. To manage your subscriptions to this > > and other Galaxy lists, please use the interface at: > > %(web_page_url)s > > > > To search Galaxy mailing lists use the unified search at: > > http://galaxyproject.org/search/ ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
