[galaxy-dev] The issue of privilege splitting for multiple Galaxy administrators.
Our team has multiple administrators to maintain the Galaxy platform in our cluster. And each administrator has their own account. But we met a problem, terms of reference for each administrator is ambiguous. For example, if users report a bug in the platform, two or three administrators will handle it. But sometimes, these administrators can't discuss timely to determine who handles these problems (because they are in different time zones). So usually, they will try to fix the issue immediately when they get reports. But sometimes, their solution may conflict. We try to arrange each administrator to handle one kind of issue to eliminate the conflict. But the reports cover lots of ranges. Our splitting can't work well. So we want to know if the galaxy can help us split the privilege of each admin accounts? Just let each admin account is in charge of developing one component of the galaxy. Such as A is in charge of tools uploading, B is in charge of fixing tools bug... May I ask is the galaxy has the function to provide this kind of privilege splitting for their admin accounts? Thanks! ___ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: %(web_page_url)s To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
[galaxy-dev] Re: Question on RNA STAR Revision: 13:850f3679b9b4
Hi Sarah,
which GTF file are you using? Please make sure every exon line has a
transcript_id.
Cheers,
Bjoern
Am 25.11.19 um 10:53 schrieb Sarah Maman:
?Hello,
Please could you help me to run this wrapper : RNA STAR Gapped-read mapper for
RNA-seq data (Galaxy Version 2.7.2b)
without this error:
terminate called after throwing an instance of 'std::out_of_range'
what(): basic_string::at
/galaxydata/galaxy-prod/my_job_working_directory/000/282/282124/tool_script.sh:
line 9: 48744 Aborted (core dumped) STAR --runThreadN
${GALAXY_SLOTS:-4}...
Even if I increase the number of genome bins for coordinate-sorting, output
files are all empty and I read this stderr above.
Thanks in advance,
Sarah Maman
INRA | SIGENAE | GenPhySE | INRA Occitanie-Toulouse
Tél. : +33(0)5.61.28.57.08
Télétravail lundi / vendredi
___
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___
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[galaxy-dev] Question on RNA STAR Revision: 13:850f3679b9b4
?Hello,
Please could you help me to run this wrapper : RNA STAR Gapped-read mapper for
RNA-seq data (Galaxy Version 2.7.2b)
without this error:
terminate called after throwing an instance of 'std::out_of_range'
what(): basic_string::at
/galaxydata/galaxy-prod/my_job_working_directory/000/282/282124/tool_script.sh:
line 9: 48744 Aborted (core dumped) STAR --runThreadN
${GALAXY_SLOTS:-4}...
Even if I increase the number of genome bins for coordinate-sorting, output
files are all empty and I read this stderr above.
Thanks in advance,
Sarah Maman
INRA | SIGENAE | GenPhySE | INRA Occitanie-Toulouse
Tél. : +33(0)5.61.28.57.08
Télétravail lundi / vendredi
___
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
%(web_page_url)s
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/
