That Galaxy version is quite old at this point. There were a couple
fixes for the cleanup_job config handling over the last year that may
have fixed the problem. I run with this option enabled daily and I
have not seen any problems in months. If you can confirm this is still
a problem with latest stable Galaxy instance - I would be definitely
be eager to address any bugs.
-John
On Sun, Nov 30, 2014 at 5:43 PM, Pandori n wrote:
> Hi all.
> Config:
> - galaxy-dist stable (changeset: 11247:a9a0ac9c1afa) [Dec/18/2013]
> - NFS
> - Cluster (torque)
>
> When i start my WF, on step 2, in 'job_working_directory' created temp
> (intermediate) dir (for tool step 3). But when step 2 is completed, temp dir
> (in 'job_working_directory') removed(via galaxy) and step 3 failed. In
> 'universe_wsgi.ini' 'cleanup_job = never'. Why galaxy.jobs deleted temp
> dir?
>
> Any help is appreciated. Thanks.
>
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