Re: [galaxy-dev] Tool development - Selecting a single item from input dataset.
I have created a Trello card to track this request here https://trello.com/c/qCtBBB8n. Any chance you can share the tool with me? I understand that this instinct is too simplistic - but it seems to me like the option to repeatedly run a tool over many datasets should not be the concern of the tool author - it is a user concern. If we add the option - perhaps we could stipulate that it requests some other parameter to dependent on it (I assume you have a dependent parameter in the repeat?). -John On Thu, Jan 22, 2015 at 5:50 AM, Vimalkumar Velayudhan vi...@biotechcoder.com wrote: Thanks Peter. I see how this feature would be useful, but the program I'm writing a wrapper for has an argument with values corresponding to the input files. I am using a repeat tag to maintain this order. With the multi-run option, files are selected in a random manner and added to the job queue. It is best not to display the multi-run option in this case. I see there is a TODO on this already: https://bitbucket.org/galaxy/galaxy-dist/src/a2308bdc93b897af974766b190abe019ade49e9a/lib/galaxy/tools/parameters/basic.py?at=default#cl-2084 For now, I have set allow=False but I believe this is best set at the param tag level: param type=data multirun=false / Vimal On Wed, Jan 21, 2015 at 2:26 AM, Peter Cock p.j.a.c...@googlemail.com wrote: I think this is the (relatively new) Galaxy ability to automatically run N copies of your tool given N input files, making N outputs and is related to the collections work. (This is possible if your tool takes a single input file) Peter On Tue, Jan 20, 2015 at 6:17 PM, Vimalkumar Velayudhan vi...@biotechcoder.com wrote: Hi all, I am trying to create a select box with the possibility of selecting only a single item from the input dataset (figure 1). This works fine but the option for selecting multiple files is still visible (figure 2). The multiple=false attribute has no effect. Figure: http://i.imgur.com/oJVFCoF.png I have the following in my XML. param format=tabular name=ribo_files type=data label=Select Ribo-Seq alignment file multiple=false /param Any suggestions? galaxy-dist revision 5f4c13d622b8 Regards, Vimalkumar Velayudhan ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Tool development - Selecting a single item from input dataset.
Thanks Peter. I see how this feature would be useful, but the program I'm writing a wrapper for has an argument with values corresponding to the input files. I am using a repeat tag to maintain this order. With the multi-run option, files are selected in a random manner and added to the job queue. It is best not to display the multi-run option in this case. I see there is a TODO on this already: https://bitbucket.org/galaxy/galaxy-dist/src/a2308bdc93b897af974766b190abe019ade49e9a/lib/galaxy/tools/parameters/basic.py?at=default#cl-2084 For now, I have set allow=False but I believe this is best set at the param tag level: param type=data multirun=false / Vimal On Wed, Jan 21, 2015 at 2:26 AM, Peter Cock p.j.a.c...@googlemail.com wrote: I think this is the (relatively new) Galaxy ability to automatically run N copies of your tool given N input files, making N outputs and is related to the collections work. (This is possible if your tool takes a single input file) Peter On Tue, Jan 20, 2015 at 6:17 PM, Vimalkumar Velayudhan vi...@biotechcoder.com wrote: Hi all, I am trying to create a select box with the possibility of selecting only a single item from the input dataset (figure 1). This works fine but the option for selecting multiple files is still visible (figure 2). The multiple=false attribute has no effect. Figure: http://i.imgur.com/oJVFCoF.png I have the following in my XML. param format=tabular name=ribo_files type=data label=Select Ribo-Seq alignment file multiple=false /param Any suggestions? galaxy-dist revision 5f4c13d622b8 Regards, Vimalkumar Velayudhan ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
[galaxy-dev] Tool development - Selecting a single item from input dataset.
Hi all, I am trying to create a select box with the possibility of selecting only a single item from the input dataset (figure 1). This works fine but the option for selecting multiple files is still visible (figure 2). The multiple=false attribute has no effect. Figure: http://i.imgur.com/oJVFCoF.png I have the following in my XML. param format=tabular name=ribo_files type=data label=Select Ribo-Seq alignment file multiple=false /param Any suggestions? galaxy-dist revision 5f4c13d622b8 Regards, Vimalkumar Velayudhan ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
Re: [galaxy-dev] Tool development - Selecting a single item from input dataset.
I think this is the (relatively new) Galaxy ability to automatically run N copies of your tool given N input files, making N outputs and is related to the collections work. (This is possible if your tool takes a single input file) Peter On Tue, Jan 20, 2015 at 6:17 PM, Vimalkumar Velayudhan vi...@biotechcoder.com wrote: Hi all, I am trying to create a select box with the possibility of selecting only a single item from the input dataset (figure 1). This works fine but the option for selecting multiple files is still visible (figure 2). The multiple=false attribute has no effect. Figure: http://i.imgur.com/oJVFCoF.png I have the following in my XML. param format=tabular name=ribo_files type=data label=Select Ribo-Seq alignment file multiple=false /param Any suggestions? galaxy-dist revision 5f4c13d622b8 Regards, Vimalkumar Velayudhan ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/ ___ Please keep all replies on the list by using reply all in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
