[gentoo-commits] repo/gentoo:master commit in: sys-kernel/aufs-sources/

2019-10-20 Thread Justin Lecher
commit: cce79e5976308ffd3117a27b3175f4fba6cf70a9
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Oct 20 18:16:57 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Oct 20 18:17:16 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cce79e59

sys-kernel/aufs-sources: Bump to latest aufs, genpatches and linux release

Package-Manager: Portage-2.3.76, Repoman-2.3.16
Signed-off-by: Justin Lecher  gentoo.org>

 sys-kernel/aufs-sources/Manifest   | 12 
 .../aufs-sources/aufs-sources-4.14.150.ebuild  | 84 ++
 .../aufs-sources/aufs-sources-4.19.80.ebuild   | 84 ++
 sys-kernel/aufs-sources/aufs-sources-5.3.7.ebuild  | 84 ++
 4 files changed, 264 insertions(+)

diff --git a/sys-kernel/aufs-sources/Manifest b/sys-kernel/aufs-sources/Manifest
index f3bd177a87c..2433db95686 100644
--- a/sys-kernel/aufs-sources/Manifest
+++ b/sys-kernel/aufs-sources/Manifest
@@ -1,7 +1,10 @@
 DIST aufs-sources-4.14.73+_p20190909.tar.xz 187192 BLAKE2B 
f448c94cbd99fcfd28883565cf0e8a293fee766f8cb65a2b968d93e43e2b554267a4de49601e2364343df1d5216e5c67f192b67d04489577328d4cfed4e983a7
 SHA512 
5c46310d4788534ce07eb2575d3be9c8b71cbc1ca648c980d5587011985e887e47740c43f4d8d71ba377eef26ee5ef43c24331d4f80733c23c431167b52667ce
+DIST aufs-sources-4.14.73+_p20191021.tar.xz 187192 BLAKE2B 
f448c94cbd99fcfd28883565cf0e8a293fee766f8cb65a2b968d93e43e2b554267a4de49601e2364343df1d5216e5c67f192b67d04489577328d4cfed4e983a7
 SHA512 
5c46310d4788534ce07eb2575d3be9c8b71cbc1ca648c980d5587011985e887e47740c43f4d8d71ba377eef26ee5ef43c24331d4f80733c23c431167b52667ce
 DIST aufs-sources-4.19.63+_p20190909.tar.xz 186872 BLAKE2B 
cf4f7ef619e9263dfd1117dcb94367c2d5cdf967c357abfeebd46bd75d3868b2b70e83de71243c1f696a5edbe1d96a156c170cc5ecb01002e359cf3239076580
 SHA512 
c5295949a95e12da7a1e2bb654fba9272edd9395042a0fa0feffb5668da8a825a2fcc46113c14279ff2fb2057e42dd14677ab4d19f4507b65fa5b7bce4d6c40b
+DIST aufs-sources-4.19.63+_p20191021.tar.xz 186908 BLAKE2B 
090882954d35cdee6ed3c2ac9ac8b33f17330609fe85b4e3c20deaa084e13347252e7b18126b63c12d6abad440e5a4fa2abf2fbb55abebbff1a50478cc3af013
 SHA512 
335a86a566f5cbd6abd61d41452615057272f971c39606b1288c37ae05242e1bfe90ef9fa19880032253160f0621d24287f428f2e40d1e7ecf63288ab5565baf
 DIST aufs-sources-5.2.5+_p20190909.tar.xz 186040 BLAKE2B 
5cf52cb5b4e91bf8df61277a696e729cd4bc89353181a07faffd8a925ed7778733fd72af25793355f3def43dc3e4ab5e82d08d53996bb75ac1885d620d019e54
 SHA512 
d05e9a2ed2cefcc6b53e591c361b1517c2b3bdd11af054058cf7c1121ab5de07cf7aeb9526027d74ac07e67f9323adedf96458136c7dd287d163f6544c313195
 DIST aufs-sources-5.3_p20190909.tar.xz 186056 BLAKE2B 
725c534609ea3e03de01ff0e5fddce68f5a1bdb53c866d7b8d8d5a6bcb529d2968dc0c73cee13506b01e57604fd05b2599f934d1be4786dc70b5be55e20f9b55
 SHA512 
f2a3c564e990196d253ebf00d1eb83a7c47ff4f87e2d160b180c988ab5e55510b8a9bd714b0b83639081e1c8dbad35deb5319383896b16d9cbf68b4ad0581279
+DIST aufs-sources-5.3_p20191021.tar.xz 186136 BLAKE2B 
f7f2d6e9cc04482ed006e2dd261c6fd28468d274de9f709ac71c3e4bab3378fde80edf379bd6b8e98ba27366682e2542e82c5eda92c7ce2dc18ee596216c7fcb
 SHA512 
02a19d48f2032084574a842079784d4ad343916f870e84f75d1a907824921548c2d0086b05ae6933fb59b8bb9a83de1d96129a3105ab1db04d28ad5bb0d0f9f3
 DIST genpatches-4.14-147.base.tar.xz 3141476 BLAKE2B 
4ec8af5006a8e722c5d2bae755a1f040d299f46731293ec04d647474da52c3e7654e686543f0a44eee14a299eb537aba9bca49da60e3adb011d7d2968bfb3a75
 SHA512 
8257b08efc29064122900ed62bee3213e6bba0a8a55300353a8f696339ce7332061bf4fff1ef9e05eec7f6d13ff5a8ec18a759b954441e4d7de516a2f1609863
 DIST genpatches-4.14-147.experimental.tar.xz 5220 BLAKE2B 
7946b31c5633841562a0a393ba478da1e7b06477146ddc368b6665e84412063f2a6376b97e0f0a9c02ad4597e2fc0ff47e18fd52e0b94b1991fa722243bf3342
 SHA512 
81a9bab041e8c19ff658ebbb7c525eae78554cbb2538eb73212829f3fb2787f6196bed7d6fb4a4495e0e207f83efec70e1149a3a6de044f1581f12b8f63d1106
 DIST genpatches-4.14-147.extras.tar.xz 17496 BLAKE2B 
fa2d6d25a3a906cf7962b311776792f20b1c02b11964e60ec31f2c46f7f248ef3de6fa50e04fa395b7797abb11746aa7f081caea9ed81c5b2a50db47a09bde85
 SHA512 
5bd378b9cc763395b42038755b56e09b6a2cbf4882c2b99c08ffb44a69648f77505a0ce0a66b36f0ad6d23a2b7c9e30f1bdcca23380487e5acb862ee5ff85e9e
@@ -26,6 +29,9 @@ DIST genpatches-4.14-157.extras.tar.xz 17500 BLAKE2B 
5e4dfd4e925d3d9eb737ef2f93c
 DIST genpatches-4.14-158.base.tar.xz 3296784 BLAKE2B 
6c643f8518a1f720a874f2c1f81ad60b8eb29396fd05606ca5c089ef609080a0f9ca3f6c2e002526d0727894d6dfd1946675b8825963ec9bb141930a2603c069
 SHA512 
ae8edcbf238f0966afc73e9740b8b467c46813452821622b36418eb951aa23a6dec9ecbb7e85a314a690a5917e4db68ae072ce935c145fe8f71b67924389318d
 DIST genpatches-4.14-158.experimental.tar.xz 5932 BLAKE2B 
0816a80002dcaa792983151fd91d55ea1325f31559a7ee1428c605641cdbb06027c8cc19a0e4d3aa63166fdc55bb841f1d72422a1c1489c5a92e53b13caafe2

[gentoo-commits] repo/gentoo:master commit in: sys-kernel/aufs-sources/

2019-10-12 Thread Justin Lecher
commit: 5e950700c2efdb1b29e45c36888d0f3deb9d194e
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Oct 12 11:17:45 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Oct 12 11:23:47 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=5e950700

sys-kernel/aufs-sources: Bump to latest aufs, genpatches and linux release

Package-Manager: Portage-2.3.69, Repoman-2.3.16
Signed-off-by: Justin Lecher  gentoo.org>

 sys-kernel/aufs-sources/Manifest   | 173 -
 .../aufs-sources/aufs-sources-4.14.131.ebuild  |  84 --
 .../aufs-sources/aufs-sources-4.14.132.ebuild  |  84 --
 .../aufs-sources/aufs-sources-4.14.133.ebuild  |  84 --
 14.130.ebuild => aufs-sources-4.14.138.ebuild} |   4 +-
 14.127.ebuild => aufs-sources-4.14.143.ebuild} |   4 +-
 14.128.ebuild => aufs-sources-4.14.144.ebuild} |   4 +-
 14.129.ebuild => aufs-sources-4.14.145.ebuild} |   4 +-
 14.130.ebuild => aufs-sources-4.14.146.ebuild} |   4 +-
 14.130.ebuild => aufs-sources-4.14.147.ebuild} |   4 +-
 14.130.ebuild => aufs-sources-4.14.148.ebuild} |   4 +-
 14.130.ebuild => aufs-sources-4.14.149.ebuild} |   4 +-
 .../aufs-sources/aufs-sources-4.19.57.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.19.58.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.19.59.ebuild   |  84 --
 ...-4.19.52.ebuild => aufs-sources-4.19.66.ebuild} |   4 +-
 ...-4.19.53.ebuild => aufs-sources-4.19.72.ebuild} |   4 +-
 ...-4.19.55.ebuild => aufs-sources-4.19.73.ebuild} |   4 +-
 ...-4.19.56.ebuild => aufs-sources-4.19.74.ebuild} |   4 +-
 ...-4.19.52.ebuild => aufs-sources-4.19.75.ebuild} |   4 +-
 ...-4.19.52.ebuild => aufs-sources-4.19.76.ebuild} |   4 +-
 ...-4.19.52.ebuild => aufs-sources-4.19.77.ebuild} |   4 +-
 ...-4.19.52.ebuild => aufs-sources-4.19.78.ebuild} |   4 +-
 ...-4.19.52.ebuild => aufs-sources-4.19.79.ebuild} |   4 +-
 ...es-5.1.12.ebuild => aufs-sources-5.2.13.ebuild} |   2 +-
 ...es-5.1.14.ebuild => aufs-sources-5.2.14.ebuild} |   2 +-
 ...es-5.1.15.ebuild => aufs-sources-5.2.15.ebuild} |   2 +-
 ...es-5.1.16.ebuild => aufs-sources-5.2.16.ebuild} |   2 +-
 ...es-5.1.17.ebuild => aufs-sources-5.2.17.ebuild} |   2 +-
 ...es-5.1.18.ebuild => aufs-sources-5.2.18.ebuild} |   2 +-
 ...es-5.1.11.ebuild => aufs-sources-5.2.19.ebuild} |   4 +-
 ...es-5.1.11.ebuild => aufs-sources-5.2.20.ebuild} |   4 +-
 ...rces-5.2.1.ebuild => aufs-sources-5.3.0.ebuild} |   2 +-
 ...rces-5.2.0.ebuild => aufs-sources-5.3.1.ebuild} |   4 +-
 ...rces-5.2.0.ebuild => aufs-sources-5.3.2.ebuild} |   4 +-
 ...rces-5.2.0.ebuild => aufs-sources-5.3.4.ebuild} |   4 +-
 ...rces-5.2.0.ebuild => aufs-sources-5.3.5.ebuild} |   4 +-
 ...s-5.2.0.ebuild => aufs-sources-5.3.6-r1.ebuild} |   4 +-
 38 files changed, 153 insertions(+), 634 deletions(-)

diff --git a/sys-kernel/aufs-sources/Manifest b/sys-kernel/aufs-sources/Manifest
index 1feed814d10..f3bd177a87c 100644
--- a/sys-kernel/aufs-sources/Manifest
+++ b/sys-kernel/aufs-sources/Manifest
@@ -1,78 +1,101 @@
-DIST aufs-sources-4.14.73+_p20190610.tar.xz 187120 BLAKE2B 
473ca0d24b2b77cf9cbaded549006bb03284bc83a051c65f625dad988b9c199de56154d8e5ce67a478fe9317b21f9629c9e7d000d9e28087635b13a8aba427d6
 SHA512 
fc382e36142b7420217f2499f0c91308e31464421f9066b1d86d655731617c51850acbf76980c34c94e3e6775ba0513b97ac691f1a7afafb59c0ee5941410be8
-DIST aufs-sources-4.19.17+_p20190610.tar.xz 186752 BLAKE2B 
9d9f51c260e78349c6a90734ebf05815853c0fe606263b45d55f2e41aeb312af772b0364039f490f2d93d1d9a166c44788555a995cfbfc1e6eb7d67557e59807
 SHA512 
054322b50761151edb79cb1b09b7087c090492ffb0e4b4ffc8aef359ec98c882aa2555646969081fb158d4d87fc5d907f90e1cace1bf6a59cd14448f5015af53
-DIST aufs-sources-5.1_p20190610.tar.xz 185984 BLAKE2B 
251f420dec51342b3bbd0dd8af31f44ae70ae2da88abd5778784f6401327674c6fa919e67495cbabeb2b1701e7e27055863fec42fc0ea75bb6b63fa1f3c745b6
 SHA512 
cc09213dd519b1cbd11d1777afc5461e81341b86e5c4ef6079b33f7f50e30a5d2fb813cbe251ebd79dc8fea68dade969fccc48174612616759b82d56ba109211
-DIST aufs-sources-5.1_p20190715.tar.xz 185984 BLAKE2B 
251f420dec51342b3bbd0dd8af31f44ae70ae2da88abd5778784f6401327674c6fa919e67495cbabeb2b1701e7e27055863fec42fc0ea75bb6b63fa1f3c745b6
 SHA512 
cc09213dd519b1cbd11d1777afc5461e81341b86e5c4ef6079b33f7f50e30a5d2fb813cbe251ebd79dc8fea68dade969fccc48174612616759b82d56ba109211
-DIST aufs-sources-5.2_p20190715.tar.xz 186024 BLAKE2B 
af9c3830a6fe78e48d4c0d7e17c90b2472f234e63537410f7d4ec846be6708c67965c828f6f10a2502668666df6cbd446d0cd89d1d36092ed0871b58686c4b9b
 SHA512 
ab2296e50e046e9ca055333568c1665017300fa42ae6da23a74e4699a03d3dec1ed59f9432ca9c03db6cd7ca8cac0833a7c722d7761cacf6333a173551646881
-DIST genpatches-4.14-135.base.tar.xz 2952192 BLAKE2B 
2d9c29c44d085bcbe720ee921fe5331285

[gentoo-commits] repo/gentoo:master commit in: net-analyzer/netdata/

2019-07-20 Thread Justin Lecher
commit: bd623a55e70a156c04dc2c27afa74c5649b58920
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Jul 21 06:47:52 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Jul 21 06:48:09 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bd623a55

net-analyzer/netdata: Disable automagic linking against json-c

Package-Manager: Portage-2.3.69, Repoman-2.3.16
Signed-off-by: Justin Lecher  gentoo.org>

 net-analyzer/netdata/metadata.xml  | 34 +++---
 net-analyzer/netdata/netdata-1.16.0.ebuild |  1 +
 net-analyzer/netdata/netdata-.ebuild   |  1 +
 3 files changed, 19 insertions(+), 17 deletions(-)

diff --git a/net-analyzer/netdata/metadata.xml 
b/net-analyzer/netdata/metadata.xml
index f12bf742e15..a160e06f365 100644
--- a/net-analyzer/netdata/metadata.xml
+++ b/net-analyzer/netdata/metadata.xml
@@ -1,23 +1,23 @@
 
 http://www.gentoo.org/dtd/metadata.dtd";>
 
-
-candr...@gentoo.org
-Craig Andrews
-
-
-Enable compression via zlib
-Enable the Netdata database engine
-Install sys-apps/ipmitool required for 
monitoring IPMI sensors.
-Enable the nfacct plugin
-Enable use of nodejs (which some plugins 
use)
-Enable monitoring of tor
-Enable monitoring of xen
-
-
-netdata/netdata
-
-
+  
+candr...@gentoo.org
+Craig Andrews
+  
+  
+Enable compression via zlib
+Enable the Netdata database engine
+Install sys-apps/ipmitool required for 
monitoring IPMI sensors.
+Enable the nfacct plugin
+Enable use of nodejs (which some plugins use)
+Enable monitoring of tor
+Enable monitoring of xen
+  
+  
+netdata/netdata
+  
+  
 Linux real time system monitoring web interface
 
 

diff --git a/net-analyzer/netdata/netdata-1.16.0.ebuild 
b/net-analyzer/netdata/netdata-1.16.0.ebuild
index 77427218be1..b12cc034edf 100644
--- a/net-analyzer/netdata/netdata-1.16.0.ebuild
+++ b/net-analyzer/netdata/netdata-1.16.0.ebuild
@@ -96,6 +96,7 @@ src_configure() {
econf \
--localstatedir="${EPREFIX}"/var \
--with-user=${NETDATA_USER} \
+   --disable-jsonc \
$(use_enable cups plugin-cups) \
$(use_enable dbengine) \
$(use_enable nfacct plugin-nfacct) \

diff --git a/net-analyzer/netdata/netdata-.ebuild 
b/net-analyzer/netdata/netdata-.ebuild
index 77427218be1..b12cc034edf 100644
--- a/net-analyzer/netdata/netdata-.ebuild
+++ b/net-analyzer/netdata/netdata-.ebuild
@@ -96,6 +96,7 @@ src_configure() {
econf \
--localstatedir="${EPREFIX}"/var \
--with-user=${NETDATA_USER} \
+   --disable-jsonc \
$(use_enable cups plugin-cups) \
$(use_enable dbengine) \
$(use_enable nfacct plugin-nfacct) \



[gentoo-commits] repo/gentoo:master commit in: sys-kernel/aufs-sources/

2019-07-15 Thread Justin Lecher
commit: 48482fddccbb0b59ca02e3b63b125619aebf1ad2
Author: Justin Lecher  gentoo  org>
AuthorDate: Mon Jul 15 09:23:16 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Mon Jul 15 09:23:31 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=48482fdd

sys-kernel/aufs-sources: Bump to latest aufs, genpatches and linux release

Package-Manager: Portage-2.3.69, Repoman-2.3.16
Signed-off-by: Justin Lecher  gentoo.org>

 sys-kernel/aufs-sources/Manifest   | 54 +-
 .../aufs-sources/aufs-sources-4.14.114.ebuild  | 84 --
 105-r1.ebuild => aufs-sources-4.14.133.ebuild} |  2 +-
 ...19.27-r1.ebuild => aufs-sources-4.19.58.ebuild} |  2 +-
 ...-4.19.37.ebuild => aufs-sources-4.19.59.ebuild} |  2 +-
 ...s-4.19.44.ebuild => aufs-sources-5.1.17.ebuild} | 22 +++---
 ...-4.14.120.ebuild => aufs-sources-5.1.18.ebuild} | 22 +++---
 ...4.19.27-r1.ebuild => aufs-sources-5.2.0.ebuild} | 22 +++---
 ...4.19.27-r1.ebuild => aufs-sources-5.2.1.ebuild} | 22 +++---
 9 files changed, 83 insertions(+), 149 deletions(-)

diff --git a/sys-kernel/aufs-sources/Manifest b/sys-kernel/aufs-sources/Manifest
index 4464abb9f5d..1feed814d10 100644
--- a/sys-kernel/aufs-sources/Manifest
+++ b/sys-kernel/aufs-sources/Manifest
@@ -1,15 +1,8 @@
 DIST aufs-sources-4.14.73+_p20190610.tar.xz 187120 BLAKE2B 
473ca0d24b2b77cf9cbaded549006bb03284bc83a051c65f625dad988b9c199de56154d8e5ce67a478fe9317b21f9629c9e7d000d9e28087635b13a8aba427d6
 SHA512 
fc382e36142b7420217f2499f0c91308e31464421f9066b1d86d655731617c51850acbf76980c34c94e3e6775ba0513b97ac691f1a7afafb59c0ee5941410be8
 DIST aufs-sources-4.19.17+_p20190610.tar.xz 186752 BLAKE2B 
9d9f51c260e78349c6a90734ebf05815853c0fe606263b45d55f2e41aeb312af772b0364039f490f2d93d1d9a166c44788555a995cfbfc1e6eb7d67557e59807
 SHA512 
054322b50761151edb79cb1b09b7087c090492ffb0e4b4ffc8aef359ec98c882aa2555646969081fb158d4d87fc5d907f90e1cace1bf6a59cd14448f5015af53
 DIST aufs-sources-5.1_p20190610.tar.xz 185984 BLAKE2B 
251f420dec51342b3bbd0dd8af31f44ae70ae2da88abd5778784f6401327674c6fa919e67495cbabeb2b1701e7e27055863fec42fc0ea75bb6b63fa1f3c745b6
 SHA512 
cc09213dd519b1cbd11d1777afc5461e81341b86e5c4ef6079b33f7f50e30a5d2fb813cbe251ebd79dc8fea68dade969fccc48174612616759b82d56ba109211
-DIST genpatches-4.14-112.base.tar.xz 2529132 BLAKE2B 
3eb9bf10b1e11d43727b11038a0b19060bc54e5591b0cb8c5ba50f223aadf333e772e5e50c1ea7b2d26a65adee0af7da9919de8e4df20845123c7e3dceae8eef
 SHA512 
650b34baea4910ce144b72df0fa7991f90cf60614e70c34bb5c2d939e5d70d4535a8487407b9a75c615d3629bdbb423f96022f2e8a28261b9bd2b99b7a9bc541
-DIST genpatches-4.14-112.experimental.tar.xz 5220 BLAKE2B 
26bfc7e99e843aab354eb176bb6b2420cb19404608ae20b647e658a4b37938a2aca99fdfe63a02c9d998be5afd899bb6672d9704962548e04d0efa4dbdcd77a2
 SHA512 
c676d9086f67e903ac9fb9af40489460ecf245ad7c4d5636ea2ba06bc1558a3aae35ee76026dc1aa3394080ff8390b38cc764ff663829deacd9b5b0cdb18e38b
-DIST genpatches-4.14-112.extras.tar.xz 17492 BLAKE2B 
cd6ce9e9541db874ddaac70afbd093045cc1c00fd5cc40426779f977facd4d2484659aa5afcc728015884de5a5e63f93ad6fda870e004992cc7cfd1d6ce008fd
 SHA512 
93b828d96414f0bffc1e773d1fbabe5bbf17d58850a3e86d8e02005b6970afc71e6647e341ccf596b1c9f5ae6f38a0f3a187f1b316c4cbd089f691a9209ab5ad
-DIST genpatches-4.14-122.base.tar.xz 2747036 BLAKE2B 
1fb32bffa4f501ed7c348c5ef373b156807d90432a68dc1b042504cc007f19a175167bd53a8d5991a8e9dad1fcf5ef52dba4be8cab9883cbf969f913657723e3
 SHA512 
cfbd539649478f8b14d60bb9988d5dc6e82a93c7ec13a3c590a326185bc40d2622297f944b7060278407752c17b36966d87085b59f1e05056c3bf97247715ead
-DIST genpatches-4.14-122.experimental.tar.xz 5224 BLAKE2B 
d63589b1eedda1bdaad3b7e9ed1bac9c02986cc4c3bf8e2fd1b80be1051eadc5f217c3cf1a76c775ade732a3da17b9256f7450b8c3e7bfce3f871ec79e06324f
 SHA512 
87c94ad73381cf86ba2e687d1023cd16b00dccf45e1d50108bd3157d2942fc2b5cd4f461e4968c8ea8120b25c308d6b29941a75c9988ebad865f7b3f3139a163
-DIST genpatches-4.14-122.extras.tar.xz 17488 BLAKE2B 
d04fec3b9eb350599786270edb09d56d7f75350b48ac08676609c6f2e55e7ffe4fa6a8aa14bff9787edf0abcdd1e62e4479dea27ed3319bc31b20957b3cd5331
 SHA512 
a5d48f6edcd34c5cb26174e9eece2b030a5d9ecbea60dd3c7d5bc43c0d8d3f86153e0bf236e394f1f7fe3beb4010edb650f0a8dd955193f9b9e1681262a9f51d
-DIST genpatches-4.14-128.base.tar.xz 2840048 BLAKE2B 
965e2b5c469fc30fc9f3542f8465a7b492f0215396dfbda37a35e68a1e6536213cf66f23909adfdc31fac0b53fca7ae1ce65c785a12f512925c3443a73707cc5
 SHA512 
b7f77407ed6d60cbcf4b60cf7334d0fef348e9dd68f33ae6920fc44ed171135b5df6b1012c1affd3cb570d92503e429f98ac0794cc697d7bc4b293f966f9edbd
-DIST genpatches-4.14-128.experimental.tar.xz 5228 BLAKE2B 
ba37a6cce365dfb193d3339d759010bec8f18b4ac558b104896b09c329941a09ba82f993103a1d8a18321f8a2495db3bba9639ac6b70d028dea5e32aa30c5443
 SHA512 
4aff0ff4a96ca1bc347a30a2bbc5232fd3d406931b74f62b8b3e57cddc02dec54d90a5d9de67e5e2c74942b68079952a9732dd2622398f290e4627d93db4510a
-DIST genpatches-4.14-1

[gentoo-commits] repo/gentoo:master commit in: sys-kernel/aufs-sources/

2019-07-15 Thread Justin Lecher
commit: e804833b0180a636445f5fa39b3142448562d663
Author: Justin Lecher  gentoo  org>
AuthorDate: Mon Jul 15 08:15:13 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Mon Jul 15 08:15:13 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e804833b

aufs-sources: Fix GENPATCHS_VER

Signed-off-by: Justin Lecher  gentoo.org>

 sys-kernel/aufs-sources/aufs-sources-5.1.12.ebuild | 2 +-
 sys-kernel/aufs-sources/aufs-sources-5.1.14.ebuild | 2 +-
 sys-kernel/aufs-sources/aufs-sources-5.1.15.ebuild | 2 +-
 sys-kernel/aufs-sources/aufs-sources-5.1.16.ebuild | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/sys-kernel/aufs-sources/aufs-sources-5.1.12.ebuild 
b/sys-kernel/aufs-sources/aufs-sources-5.1.12.ebuild
index 1fb619eff7e..96f2d851079 100644
--- a/sys-kernel/aufs-sources/aufs-sources-5.1.12.ebuild
+++ b/sys-kernel/aufs-sources/aufs-sources-5.1.12.ebuild
@@ -5,7 +5,7 @@ EAPI=6
 
 ETYPE="sources"
 K_WANT_GENPATCHES="base extras experimental"
-K_GENPATCHES_VER=12
+K_GENPATCHES_VER=13
 UNIPATCH_STRICTORDER=1
 inherit kernel-2 eutils readme.gentoo-r1
 

diff --git a/sys-kernel/aufs-sources/aufs-sources-5.1.14.ebuild 
b/sys-kernel/aufs-sources/aufs-sources-5.1.14.ebuild
index 1fb619eff7e..498d118a559 100644
--- a/sys-kernel/aufs-sources/aufs-sources-5.1.14.ebuild
+++ b/sys-kernel/aufs-sources/aufs-sources-5.1.14.ebuild
@@ -5,7 +5,7 @@ EAPI=6
 
 ETYPE="sources"
 K_WANT_GENPATCHES="base extras experimental"
-K_GENPATCHES_VER=12
+K_GENPATCHES_VER=14
 UNIPATCH_STRICTORDER=1
 inherit kernel-2 eutils readme.gentoo-r1
 

diff --git a/sys-kernel/aufs-sources/aufs-sources-5.1.15.ebuild 
b/sys-kernel/aufs-sources/aufs-sources-5.1.15.ebuild
index 1fb619eff7e..a27fab84663 100644
--- a/sys-kernel/aufs-sources/aufs-sources-5.1.15.ebuild
+++ b/sys-kernel/aufs-sources/aufs-sources-5.1.15.ebuild
@@ -5,7 +5,7 @@ EAPI=6
 
 ETYPE="sources"
 K_WANT_GENPATCHES="base extras experimental"
-K_GENPATCHES_VER=12
+K_GENPATCHES_VER=15
 UNIPATCH_STRICTORDER=1
 inherit kernel-2 eutils readme.gentoo-r1
 

diff --git a/sys-kernel/aufs-sources/aufs-sources-5.1.16.ebuild 
b/sys-kernel/aufs-sources/aufs-sources-5.1.16.ebuild
index 1fb619eff7e..76761cd8647 100644
--- a/sys-kernel/aufs-sources/aufs-sources-5.1.16.ebuild
+++ b/sys-kernel/aufs-sources/aufs-sources-5.1.16.ebuild
@@ -5,7 +5,7 @@ EAPI=6
 
 ETYPE="sources"
 K_WANT_GENPATCHES="base extras experimental"
-K_GENPATCHES_VER=12
+K_GENPATCHES_VER=16
 UNIPATCH_STRICTORDER=1
 inherit kernel-2 eutils readme.gentoo-r1
 



[gentoo-commits] repo/gentoo:master commit in: sys-cluster/singularity/files/, sys-cluster/singularity/

2019-07-08 Thread Justin Lecher
commit: e5282d8147687f9785ac63d6d050995492cebaad
Author: Justin Lecher  gentoo  org>
AuthorDate: Mon Jul  8 12:23:22 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Mon Jul  8 19:35:26 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e5282d81

sys-cluster/singularity: Version Bump & drop vulnerable version

https://bugs.gentoo.org/657020

Package-Manager: Portage-2.3.68, Repoman-2.3.16
Signed-off-by: Justin Lecher  gentoo.org>

 sys-cluster/singularity/Manifest   |  4 +-
 .../files/singularity-2.3.1-slurm.patch| 54 --
 sys-cluster/singularity/metadata.xml   |  5 --
 sys-cluster/singularity/singularity-2.3.1.ebuild   | 48 ---
 sys-cluster/singularity/singularity-2.4.ebuild | 42 -
 ...arity-2.4.2.ebuild => singularity-2.6.1.ebuild} |  7 ++-
 6 files changed, 4 insertions(+), 156 deletions(-)

diff --git a/sys-cluster/singularity/Manifest b/sys-cluster/singularity/Manifest
index 75ba6269d6f..db1918daa9c 100644
--- a/sys-cluster/singularity/Manifest
+++ b/sys-cluster/singularity/Manifest
@@ -1,3 +1 @@
-DIST singularity-2.3.1.tar.gz 643021 BLAKE2B 
4c5648330005af22515435d5daf4a27e39b79cfa52de36bdc48b63877b703329f36c81f782c1e9d8394b6668e8503961ef682d5bd71f48f665b3691df8f70a93
 SHA512 
36c581e8dba57d133013c2fcfea26886b54a1a9a9165b011d2cebacb2a6249fe0f8e5aa91ed90f7a18855c658300682436c431a226629408f31422cc8a036600
-DIST singularity-2.4.2.tar.gz 691214 BLAKE2B 
c82f48d20d0a0b6e8086e275fa1621b0e3cae5ecd515719543d69f0ba286f3c09d9fc479e8be3b78921ef32014325dcb5482d2ce813e4388db683a408d27e3a7
 SHA512 
2c26af6cd092bc030113cdb2a79430d82d51b7438330a6cd0706e46438296feed4d86b08d57efff0b7df148ca0e08f706b8a214f03439bccd7d196714cd06dbc
-DIST singularity-2.4.tar.gz 689760 BLAKE2B 
03ec88405bb1316ae3098c8ec9620f7e0dac8417b10c7d20cf0411983f0089e8e32e58a4e2ca5c4c40aeebaf044cc3d45261d5635146de6b043f33f92871a227
 SHA512 
b445e73d9794f344ab72ce17d8f802390d0c0c153791b837f416254eadabf19365f1abd29f0b498be5486b600f32cd7fe53e5dc131eee3465ab890c9d6b171f4
+DIST singularity-2.6.1.tar.gz 835029 BLAKE2B 
4a581e1bc5df9d664d68f17e275f01081c850aa53f8a9bfcceaf5eb2b8f16e3a018f88669674c7427c60ab00ec0f21b4ec5e6ecaab261c16f70a998cb54ff855
 SHA512 
063327c67dae2629d1decebc060c474a72e6741f6dc9b6373734e429ccf11d53ee55c1578c28e74e8f8bcda87f3e0b735a3a0e982c9ea894f03a31eaaadf617c

diff --git a/sys-cluster/singularity/files/singularity-2.3.1-slurm.patch 
b/sys-cluster/singularity/files/singularity-2.3.1-slurm.patch
deleted file mode 100644
index 71a8d9972b7..000
--- a/sys-cluster/singularity/files/singularity-2.3.1-slurm.patch
+++ /dev/null
@@ -1,54 +0,0 @@
-From e858cfaf73eadb4cf4076a754c4836816c908d44 Mon Sep 17 00:00:00 2001
-From: Petr Votava 
-Date: Thu, 29 Jun 2017 16:53:48 +
-Subject: [PATCH] A patch for slurm plugin build
-

- src/slurm/Makefile.am   | 2 +-
- src/slurm/singularity.c | 4 ++--
- 2 files changed, 3 insertions(+), 3 deletions(-)
-
-diff --git a/src/slurm/Makefile.am b/src/slurm/Makefile.am
-index 860c7667d..152e41450 100644
 a/src/slurm/Makefile.am
-+++ b/src/slurm/Makefile.am
-@@ -4,7 +4,7 @@ plugindir = $(libdir)/slurm
- if WITH_SLURM
- plugin_LTLIBRARIES = singularity_spank.la
- singularity_spank_la_SOURCES = singularity.c
--singularity_spank_la_LIBADD = ../lib/libsingularity_internal.la
-+singularity_spank_la_LIBADD = ../lib/runtime/libinternal.la
- singularity_spank_la_LDFLAGS = -module -no-undefined -avoid-version 
-export-symbols-regex '^slurm_spank_|^plugin_'
- endif
- 
-diff --git a/src/slurm/singularity.c b/src/slurm/singularity.c
-index acfd1..3509f4d8e 100644
 a/src/slurm/singularity.c
-+++ b/src/slurm/singularity.c
-@@ -22,6 +22,7 @@
- 
- #define _GNU_SOURCE 1
- 
-+#include 
- #include 
- #include 
- #include 
-@@ -29,9 +30,9 @@
- #include 
- 
- #include "config.h"
--#include "lib/singularity.h"
- #include "util/util.h"
- #include "util/file.h"
-+#include "util/registry.h"
- 
- #include "slurm/spank.h"
- 
-@@ -169,7 +170,6 @@ static int setup_container(spank_t spank)
- }
- 
- 
--char *image;
- if ( ( image = singularity_registry_get("IMAGE") ) == NULL ) {
- singularity_message(ERROR, "SINGULARITY_CONTAINER not defined!\n");
- }

diff --git a/sys-cluster/singularity/metadata.xml 
b/sys-cluster/singularity/metadata.xml
index bb97aa8832e..f4750025819 100644
--- a/sys-cluster/singularity/metadata.xml
+++ b/sys-cluster/singularity/metadata.xml
@@ -8,9 +8,4 @@

singularityware/singularity

-   
-   
-   Compile spank plugin for sys-cluster/slurm
-   
-   
 

diff --git a/sys-cluster/singularity/singularity-2.3.1.ebuild 
b/sys-cluster/singularity/singularity-2.3.1.ebuild
deleted file mode 100644
index c072830a2c1..000
--- a/sys-cluster

[gentoo-commits] repo/gentoo:master commit in: sys-cluster/slurm/, sys-cluster/slurm/files/

2019-07-08 Thread Justin Lecher
commit: d21a20c69d563695edb1d5ad687dd72184dcfa2a
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Jul  7 17:49:08 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Mon Jul  8 19:35:26 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d21a20c6

sys-cluster/slurm: Version Bump

Clean mysql deps
Install torque wrapper correctly

Closes: https://bugs.gentoo.org/666102
Closes: https://bugs.gentoo.org/676916
Closes: https://bugs.gentoo.org/666072
Closes: https://bugs.gentoo.org/506706
Package-Manager: Portage-2.3.68, Repoman-2.3.16
Signed-off-by: Justin Lecher  gentoo.org>

 sys-cluster/slurm/Manifest|  4 ++--
 ...sable-sview.patch => slurm-17.11.13.2-disable-sview.patch} |  0
 ...-disable-sview.patch => slurm-18.08.7-disable-sview.patch} |  0
 sys-cluster/slurm/metadata.xml|  1 +
 .../slurm/{slurm-17.11.12.ebuild => slurm-17.11.13.2.ebuild}  | 11 ---
 .../slurm/{slurm-18.08.3-r1.ebuild => slurm-18.08.7.ebuild}   |  9 ++---
 6 files changed, 17 insertions(+), 8 deletions(-)

diff --git a/sys-cluster/slurm/Manifest b/sys-cluster/slurm/Manifest
index 9ef55782fc5..5d692ad2b82 100644
--- a/sys-cluster/slurm/Manifest
+++ b/sys-cluster/slurm/Manifest
@@ -1,2 +1,2 @@
-DIST slurm-17.11.12.tar.bz2 6257065 BLAKE2B 
3427645f9e54e90ce5f61395a1df7f2c1c9f5582e25780daab8a05dbe92bd39841356df8e66334bc3d8ee3d81f6a56b344e81ed142cd354d22fbdb4729c554d1
 SHA512 
bd59d2d9291e00c9ab71479e2190b89a7798f1ba9a4320b003d7c1ad6d62983c1d3debfdbdfc6e0abaf66472be6e3108c4969feb151e30874d3b51f53d213803
-DIST slurm-18.08.3.tar.bz2 6092020 BLAKE2B 
63d5c7682decadc723637293660057a27a20b5ba4f0e0d53708091b86b59ed05c28ad19a70b2cf6d7c1e58df81f12fb2b5e26e44fa06cb5deacde5cd5b7db0f7
 SHA512 
2d1018e5b1520a5d71825d548d91d06d0f0a8df92b33f87d21a2238a5245a1199ca588370aea1df6ad9d09242df9a6af19ea80357dae41a0337812617721c8bf
+DIST slurm-17.11.13-2.tar.bz2 6261416 BLAKE2B 
bca7a06e703799371da11a7427ce009784c7236569f4b24b278078231192bb0e90604fb90a61f8269881ccacd154cbf03174b3e4600410a8c726beccf4aefd18
 SHA512 
d419984bfa1bf1be20d3439672eaf868e3e0c45549b8d696bb6f588a57e1bc1e765dbca8a9a62c54bf27c3dfbbd0f165f573459a22ef87d976bc511c22fde639
+DIST slurm-18.08.7.tar.bz2 6186006 BLAKE2B 
a5458f72cbe93bc1103c2c7f3d428ae14239cb092edad2c683e448dda35f3e108fef0d9a3a86599da6058c9c98a86dafed9a087ffe6e8d7425db9cdb879954b3
 SHA512 
d0047086f1b716877cc5bb39539bf96a8fd08b1851c85fd85112c6432c1ce2a0f29fc9dd8803094c8fa44d063cec5f417e6bed231b6d338934ff4b48424a5a93

diff --git a/sys-cluster/slurm/files/slurm-17.11.12-disable-sview.patch 
b/sys-cluster/slurm/files/slurm-17.11.13.2-disable-sview.patch
similarity index 100%
rename from sys-cluster/slurm/files/slurm-17.11.12-disable-sview.patch
rename to sys-cluster/slurm/files/slurm-17.11.13.2-disable-sview.patch

diff --git a/sys-cluster/slurm/files/slurm-18.08.3-disable-sview.patch 
b/sys-cluster/slurm/files/slurm-18.08.7-disable-sview.patch
similarity index 100%
rename from sys-cluster/slurm/files/slurm-18.08.3-disable-sview.patch
rename to sys-cluster/slurm/files/slurm-18.08.7-disable-sview.patch

diff --git a/sys-cluster/slurm/metadata.xml b/sys-cluster/slurm/metadata.xml
index 433eeb9e04c..ddcebd29a67 100644
--- a/sys-cluster/slurm/metadata.xml
+++ b/sys-cluster/slurm/metadata.xml
@@ -17,6 +17,7 @@
Add support for netloc (amd64 only)
Add NUMA awareness
Add Infiniband support via ofed
+   Install SQL server for slurmdbd
Enable perl scripts that emulates pbs 
(qstat, qsub etc.)

 

diff --git a/sys-cluster/slurm/slurm-17.11.12.ebuild 
b/sys-cluster/slurm/slurm-17.11.13.2.ebuild
similarity index 97%
rename from sys-cluster/slurm/slurm-17.11.12.ebuild
rename to sys-cluster/slurm/slurm-17.11.13.2.ebuild
index 67111e2fac8..d669350a8a3 100644
--- a/sys-cluster/slurm/slurm-17.11.12.ebuild
+++ b/sys-cluster/slurm/slurm-17.11.13.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -30,14 +30,17 @@ HOMEPAGE="https://www.schedmd.com";
 
 LICENSE="GPL-2"
 SLOT="0"
-IUSE="debug hdf5 html ipmi json lua multiple-slurmd +munge mysql netloc numa 
ofed pam perl ssl static-libs torque X"
+IUSE="debug hdf5 html ipmi json lua multiple-slurmd +munge mysql netloc numa 
ofed pam perl slurmdbd ssl static-libs torque X"
 
 CDEPEND="
!sys-cluster/torque
!net-analyzer/slurm
!net-analyzer/sinfo
|| ( sys-cluster/pmix[-pmi] >=sys-cluster/openmpi-2.0.0 )
-   mysql? ( virtual/mysql )
+   mysql? (
+   || ( dev-db/mariadb-connector-c dev-db/mysql-connector-c )
+   slurmdbd? ( || ( dev-db/mariadb dev-db/mysql ) )
+   )
munge? ( sys-auth/munge )
pam?

[gentoo-commits] repo/gentoo:master commit in: sys-fs/pysize/files/, sys-fs/pysize/

2019-07-08 Thread Justin Lecher
commit: 7b6255ed70d718ed032f9806fb206700477de39b
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Jul  7 08:06:51 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Mon Jul  8 19:34:58 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7b6255ed

sys-fs/pysize: Restrict test and EAPI=7

Closes: https://bugs.gentoo.org/643440
Closes: https://bugs.gentoo.org/650112
Package-Manager: Portage-2.3.68, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-fs/pysize/files/psyco-0.2-automagic.patch|  4 ++--
 sys-fs/pysize/pysize-0.2-r1.ebuild   |  8 +++-
 sys-fs/pysize/{pysize-0.2-r1.ebuild => pysize-0.2-r2.ebuild} | 12 +---
 3 files changed, 18 insertions(+), 6 deletions(-)

diff --git a/sys-fs/pysize/files/psyco-0.2-automagic.patch 
b/sys-fs/pysize/files/psyco-0.2-automagic.patch
index 696f81fa4fe..72129804b88 100644
--- a/sys-fs/pysize/files/psyco-0.2-automagic.patch
+++ b/sys-fs/pysize/files/psyco-0.2-automagic.patch
@@ -1,5 +1,5 @@
 pysize/main.py 2007-03-11 16:09:53.0 +0100
-+++ pysize/main.py.new 2009-01-02 00:08:43.384827054 +0100
+--- a/pysize/main.py   2007-03-11 16:09:53.0 +0100
 b/pysize/main.py.new   2009-01-02 00:08:43.384827054 +0100
 @@ -69,17 +69,8 @@
  stats.print_stats(40)
  os.remove(prof_file)

diff --git a/sys-fs/pysize/pysize-0.2-r1.ebuild 
b/sys-fs/pysize/pysize-0.2-r1.ebuild
index 00d9596d3c9..867db7463b7 100644
--- a/sys-fs/pysize/pysize-0.2-r1.ebuild
+++ b/sys-fs/pysize/pysize-0.2-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
@@ -18,6 +18,8 @@ IUSE="gtk ncurses"
 
 REQUIRED_USE="${PYTHON_REQUIRED_USE}"
 
+RESTRICT="test"
+
 RDEPEND="
gtk? ( dev-python/pygtk:2 )
ncurses? ( sys-libs/ncurses:0= )"
@@ -48,6 +50,10 @@ python_prepare_all() {
rm -rf pysize/ui/curses || die "Failed to remove ncurses 
support"
fi
 
+   sed \
+   -e "s:/tmp:${T}:g" \
+   -i tests/tests/*.py tests/*py || die
+
sed \
-e '/for ui_run in/s:ui_ascii.run:ui_ascii.run, ui_ascii.run:g' 
\
-i pysize/main.py || die

diff --git a/sys-fs/pysize/pysize-0.2-r1.ebuild 
b/sys-fs/pysize/pysize-0.2-r2.ebuild
similarity index 89%
copy from sys-fs/pysize/pysize-0.2-r1.ebuild
copy to sys-fs/pysize/pysize-0.2-r2.ebuild
index 00d9596d3c9..df91d9b7fc8 100644
--- a/sys-fs/pysize/pysize-0.2-r1.ebuild
+++ b/sys-fs/pysize/pysize-0.2-r2.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=7
 
 PYTHON_COMPAT=( python2_7 pypy )
 
@@ -13,11 +13,13 @@ SRC_URI="http://guichaz.free.fr/${PN}/files/${P}.tar.bz2";
 
 LICENSE="GPL-2"
 SLOT="0"
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 IUSE="gtk ncurses"
 
 REQUIRED_USE="${PYTHON_REQUIRED_USE}"
 
+RESTRICT="test"
+
 RDEPEND="
gtk? ( dev-python/pygtk:2 )
ncurses? ( sys-libs/ncurses:0= )"
@@ -48,6 +50,10 @@ python_prepare_all() {
rm -rf pysize/ui/curses || die "Failed to remove ncurses 
support"
fi
 
+   sed \
+   -e "s:/tmp:${T}:g" \
+   -i tests/tests/*.py tests/*py || die
+
sed \
-e '/for ui_run in/s:ui_ascii.run:ui_ascii.run, ui_ascii.run:g' 
\
-i pysize/main.py || die



[gentoo-commits] repo/gentoo:master commit in: sys-fs/aufs-util/

2019-07-07 Thread Justin Lecher
commit: 111e03e33b420130474bc87cb6948b0833a16932
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Jul  6 11:08:47 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Jul  7 06:49:07 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=111e03e3

sys-fs/aufs-util: Version Bump

Package-Manager: Portage-2.3.68, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-fs/aufs-util/Manifest|  1 +
 sys-fs/aufs-util/aufs-util-4.14_p20190603.ebuild | 48 
 2 files changed, 49 insertions(+)

diff --git a/sys-fs/aufs-util/Manifest b/sys-fs/aufs-util/Manifest
index b53c4ac21ed..2023a0d0af0 100644
--- a/sys-fs/aufs-util/Manifest
+++ b/sys-fs/aufs-util/Manifest
@@ -1,2 +1,3 @@
 DIST aufs-util-4.14_p20180709.tar.xz 103724 BLAKE2B 
50df13812b090e5d8aa9a07009822f9a324091471243a76c9432ea22698a6167273e661f5ebf176fb3cc419fbe560e82ff73d6e3b37ed0a85a01e6315b06c8ac
 SHA512 
f6330dfc0ddc36102473d9931c62a7f9a5549a3ad2b78ababedf68d335ef02b155a90327dd0c7d446182530db755b9ff756533f90c540bf8aacca5eb117555df
+DIST aufs-util-4.14_p20190603.tar.xz 104096 BLAKE2B 
901c7405866cc8db490248b86e45e57375ea5d8db11505c0c15fd49f5bd9e7ea5a6c3d272bd8f001ac3db11665a9c3607565c7eb5be8cd5f45acf4b5f994ceb9
 SHA512 
803ce51a77c3e4942d3b8817be638c5e2440821088eeb58742eb0395b9c83f68975ed64a0410b6155b18edf0af47ef9df916be07d912fdb2bd4e94987a037fa7
 DIST aufs-util-4.1_p20170130.tar.xz 100144 BLAKE2B 
d3032feeb787e3864247890c2b77468cb39ac1936cebc7e2044a2a58bd84817401b0cf7ab42413ca2c6307430552b49fb642d45e04c42f2729c0a5f1ccfb1589
 SHA512 
bf47829bdd93472a318e3eb1fd76332a95a42b3ec39b4d3392baac419ca70bd47b7b0c6209592ad70c284ee997a71e3448e79fa0ad6b4a6db16ffa0c47ed11ca

diff --git a/sys-fs/aufs-util/aufs-util-4.14_p20190603.ebuild 
b/sys-fs/aufs-util/aufs-util-4.14_p20190603.ebuild
new file mode 100644
index 000..98b1a6c96ea
--- /dev/null
+++ b/sys-fs/aufs-util/aufs-util-4.14_p20190603.ebuild
@@ -0,0 +1,48 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit eutils flag-o-matic linux-info multilib toolchain-funcs
+
+DESCRIPTION="Utilities are always necessary for aufs"
+HOMEPAGE="http://aufs.sourceforge.net/";
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz";
+# git archive -v --prefix=${P}/ 
--remote=git://git.code.sf.net/p/aufs/aufs-util aufs4.14 -o ${P}.tar
+# xz -ve9 *.tar
+
+SLOT="0"
+LICENSE="GPL-2"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="
+   !sys-fs/aufs2
+   !

[gentoo-commits] repo/gentoo:master commit in: sys-fs/aufs-headers/

2019-07-07 Thread Justin Lecher
commit: d77bd64914d390e56730f86b5301d32f121b9f11
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Jul  6 10:57:49 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Jul  7 06:49:07 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d77bd649

sys-fs/aufs-headers: Version Bump

Package-Manager: Portage-2.3.68, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-fs/aufs-headers/Manifest   |  1 +
 .../aufs-headers-4.14_p20190603.ebuild | 25 ++
 2 files changed, 26 insertions(+)

diff --git a/sys-fs/aufs-headers/Manifest b/sys-fs/aufs-headers/Manifest
index 65a74379bf5..aad43cc826c 100644
--- a/sys-fs/aufs-headers/Manifest
+++ b/sys-fs/aufs-headers/Manifest
@@ -1,2 +1,3 @@
 DIST aufs-headers-4.14_p20180709.tar.xz 3352 BLAKE2B 
31b1573de9305518ef7935d7166d720f055c4b70de48943910d9041f976f483759af1998e6aa1dccff89fad0ff391686c4e18c867e700fcd4bb1211cc0004cc6
 SHA512 
e2c4e90c555edc072ebcb348de50e5ec9ba6e2785758d10f14e43c8a03980dfadd58bc9cd37c811648bfabda37e6ed7d0bf36d7099edd26f40672b0ca0f2f226
+DIST aufs-headers-4.14_p20190603.tar.xz 3352 BLAKE2B 
771597a8812030caaf39f5b1d087fd9e815c6d4b0deda8a8f64c05e9cf21ceefd9001a6491ab87db3a3fedb6d8d7f510db334ddb32a6f1b52230a7ea83242ad1
 SHA512 
4cee3900ff832bbd76fe68868c60fa29b9a5680ea7ef34fdc7f838c50be699616035929734badc89afa06dc429ec795cfbf16a5a76d6928cc8cdc4ec86491a58
 DIST aufs-headers-4.1_p20170130.tar.xz 3136 BLAKE2B 
cda05eed3429c84dae70a5c88600e4369d4997cca5d0b8f21c82dcb3449b0b88ac27b3e3216034272a6f2ff53aa455b3eb9dc23fc7cc77473aa53943340df9c7
 SHA512 
d8099a59784739b76eac74de7113754981b6d2d4155eaf42f9d36ea4b6c84f6f49cd96ce0b9e19b2507674cd9b91667fe8520f1cfb7ff0e1d5c58596e784c6d0

diff --git a/sys-fs/aufs-headers/aufs-headers-4.14_p20190603.ebuild 
b/sys-fs/aufs-headers/aufs-headers-4.14_p20190603.ebuild
new file mode 100644
index 000..4d859f69d22
--- /dev/null
+++ b/sys-fs/aufs-headers/aufs-headers-4.14_p20190603.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+DESCRIPTION="User space headers for aufs3"
+HOMEPAGE="http://aufs.sourceforge.net/";
+# Clone git://aufs.git.sourceforge.net/gitroot/aufs/aufs4-linux.git
+# Check aufs release Branch
+# Create .config
+# make headers_install INSTALL_HDR_PATH=${T}
+# find ${T} -type f \( ! -name "*aufs*" \) -delete
+# find ${T} -type d -empty -delete
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz";
+
+SLOT="0"
+LICENSE="GPL-2"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+S="${WORKDIR}"
+
+src_install() {
+   doheader -r include/*
+}



[gentoo-commits] repo/gentoo:master commit in: sys-kernel/aufs-sources/

2019-07-07 Thread Justin Lecher
commit: c53ad4b0b401d98e976a3232656af23d37672bea
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Jul  7 06:48:46 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Jul  7 06:49:07 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c53ad4b0

sys-kernel/aufs-sources: Bump to latest aufs, genpatches and linux release

Package-Manager: Portage-2.3.68, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-kernel/aufs-sources/Manifest   | 122 ++---
 ...4.95.ebuild => aufs-sources-4.14.105-r1.ebuild} |   4 +-
 ...4.14.96.ebuild => aufs-sources-4.14.114.ebuild} |   4 +-
 ...4.14.93.ebuild => aufs-sources-4.14.120.ebuild} |   4 +-
 ...4.14.95.ebuild => aufs-sources-4.14.127.ebuild} |   4 +-
 ...4.14.95.ebuild => aufs-sources-4.14.128.ebuild} |   4 +-
 ...4.14.95.ebuild => aufs-sources-4.14.129.ebuild} |   4 +-
 ...4.14.95.ebuild => aufs-sources-4.14.130.ebuild} |   4 +-
 ...4.14.95.ebuild => aufs-sources-4.14.131.ebuild} |   4 +-
 ...4.14.95.ebuild => aufs-sources-4.14.132.ebuild} |   4 +-
 .../aufs-sources/aufs-sources-4.14.83.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.14.97.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.19.17.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.19.18.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.19.19.ebuild   |  84 --
 ...19.14.ebuild => aufs-sources-4.19.27-r1.ebuild} |   4 +-
 ...-4.19.15.ebuild => aufs-sources-4.19.37.ebuild} |   4 +-
 ...-4.14.92.ebuild => aufs-sources-4.19.44.ebuild} |   4 +-
 ...-4.19.16.ebuild => aufs-sources-4.19.52.ebuild} |   4 +-
 ...-4.19.14.ebuild => aufs-sources-4.19.53.ebuild} |   4 +-
 ...-4.19.14.ebuild => aufs-sources-4.19.55.ebuild} |   4 +-
 ...-4.19.14.ebuild => aufs-sources-4.19.56.ebuild} |   4 +-
 ...-4.19.14.ebuild => aufs-sources-4.19.57.ebuild} |   4 +-
 sys-kernel/aufs-sources/aufs-sources-4.20.4.ebuild |  84 --
 sys-kernel/aufs-sources/aufs-sources-4.20.5.ebuild |  84 --
 sys-kernel/aufs-sources/aufs-sources-4.20.6.ebuild |  84 --
 sys-kernel/aufs-sources/aufs-sources-4.20.7.ebuild |  84 --
 ...es-4.20.0.ebuild => aufs-sources-5.1.11.ebuild} |  22 ++--
 ...es-4.20.1.ebuild => aufs-sources-5.1.12.ebuild} |  22 ++--
 ...es-4.20.2.ebuild => aufs-sources-5.1.14.ebuild} |  22 ++--
 ...es-4.20.3.ebuild => aufs-sources-5.1.15.ebuild} |  22 ++--
 ...es-4.20.0.ebuild => aufs-sources-5.1.16.ebuild} |  22 ++--
 32 files changed, 147 insertions(+), 909 deletions(-)

diff --git a/sys-kernel/aufs-sources/Manifest b/sys-kernel/aufs-sources/Manifest
index a18aed7b09c..4464abb9f5d 100644
--- a/sys-kernel/aufs-sources/Manifest
+++ b/sys-kernel/aufs-sources/Manifest
@@ -1,66 +1,60 @@
-DIST aufs-sources-4.14.56+_p20181217.tar.xz 185952 BLAKE2B 
287a45908e5659ed8eb7a9fe4b250baaa3d35891b9601e6d02f0ab4b74cb7a80cb71e77e01e53d10364f5545318cad8a870edb51ca3bd24d7aa04ee6112b3d8d
 SHA512 
3b9b52fbee9de5b02121b89b23ee0e8cf7ab7223f6d61715ee01502b33773f34dfe230eb4614819b870bc81b0b986625f9281e7a1ed2ee09c7a82ccd270e9e89
-DIST aufs-sources-4.19_p20181217.tar.xz 185712 BLAKE2B 
e5eca7fe564eae80ac6ce556042864d45c43b3eecf7109c930813eceb7eab11615db8ebe237e7c05773021028577fba6f37131c0afef751490834bbf0658fef1
 SHA512 
55f0788f34dcdfcf01def35e19c98bb020a396d312c0caf650049306d61a4decc4702c48915335c79b0672120efe58bf356985b40d9d110e0c321ff282f75a2b
-DIST aufs-sources-4.20_p20190204.tar.xz 186152 BLAKE2B 
e8b4cd4ffa192135b9b0282f2a40e60ff0a96967791a6ce96c48e735faa7c2b3b4d8a00cfcc2dcc86e3743d1cb704695da04bd36fd6949f79c8d6cb58e7eb14f
 SHA512 
2c527b5ab426d2f64e572b451d400ac5254e556a15e99df353e23c368bc0602c1ce3cc5cda3ee5c8061c69d1185a8a2bf06620748523b7f00e6c8959b00c90ec
-DIST genpatches-4.14-100.base.tar.xz 2365856 BLAKE2B 
c4a5c4d0ec84ae557c6779069bfe7a846cc86c0c6e9cd9149d7071e17a17abce01d86f348cab7399f488832d3b7a4980922484fb1f41bd3f897f1e700b86ff74
 SHA512 
65ca3501b7ec4d3c190f19d79f18770815b7010a8211d7cba51da09c58280bf33314987b0fddbab6d191b0cb681428a28212f527b807fd0a2fc8994e56b6e7af
-DIST genpatches-4.14-100.experimental.tar.xz 5220 BLAKE2B 
8f409ee4127ef0bcade20933fd5bfd4b1bc23135a28cdea676f54bfe7dddfd716142d51984921a9b5cf13422a0a9cb27e616710d12d881e11897a1874f1beb49
 SHA512 
854e2766ff11f067c8a4ca1318824f63240f0193ad74c3731a499cdc1aa672276fc87b2dfaf7ef0480c5a90d27fb4b3970271546fd9de77e65b38704ebf8f97d
-DIST genpatches-4.14-100.extras.tar.xz 17488 BLAKE2B 
ebed8f0992ea03154bfe052cd235389abe6c0f091f8d431695ec4f33b37b3cdf31fe76f4b04ba182ff0f86fb92a68198a5c9145446dda550dd8b85cd1bf7f7e5
 SHA512 
78e5c6492139d83b6b048dc1fdc30581ad143afd2176a625ad417097a76572a0f1ebba930d2eb6d13803ab74d5daf843cce4e0a7de6a187ca55ba907a7d2df6a
-DIST genpatches-4.14-102.base.tar.xz 2384780 BLAKE2B 
e4aacdad6e343937602ea8afc7a8f424e9d8d4d95b6d0a292ecefb6637eaf

[gentoo-commits] repo/gentoo:master commit in: sys-cluster/ucx/

2019-07-07 Thread Justin Lecher
commit: da00598904de34d68c2b62fdb343246cda5a4be5
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Jul  7 06:46:28 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Jul  7 06:49:07 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=da005989

sys-cluster/ucx: Version Bump

Package-Manager: Portage-2.3.68, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-cluster/ucx/Manifest |  1 +
 sys-cluster/ucx/ucx-1.5.2.ebuild | 31 +++
 2 files changed, 32 insertions(+)

diff --git a/sys-cluster/ucx/Manifest b/sys-cluster/ucx/Manifest
index 6382831bd8a..8c6528f4137 100644
--- a/sys-cluster/ucx/Manifest
+++ b/sys-cluster/ucx/Manifest
@@ -1,2 +1,3 @@
 DIST ucx-1.2.2.tar.gz 1513611 BLAKE2B 
488b9b3cecc2c617b1209036e1342e4378459db6a5e93eab1d88dfe80cb0d9c8013c767413206f0fbd0105557ed89994ab510421068d709101336a7b3d2eac5e
 SHA512 
515c382826310b9aa7179ab19ceb76a881a41e6786514219b7f703c6144fa57ca141bceb3b80523ae1b4e2a4b13e9abcb9df063612b376d894c5cd81cdc00571
 DIST ucx-1.3.0.tar.gz 1707317 BLAKE2B 
740ab240663a26fde8abe631416dae6233febf3c587ba6bb7b27a9cb0aa041540ce71e106bb3c5618a719de66d479055961908b67125df61a4c7696999c0affb
 SHA512 
0a2e32985e0225fc4ad15dbb1c422dba1d5552638e7329d67572924502e61e1a481ce30cde5ccc83c663fb4ec643df83efc08aed164dfbce6cf38d66a16b3e42
+DIST ucx-1.5.2.tar.gz 1844416 BLAKE2B 
2e0296e34d8116a79c545fb3371dda1746517a18cc75f94da5d1f9420c7a74752839d5a3a07a61a2e91021baa87a26d02ab24554316351db9ba76721a18a5244
 SHA512 
7f11014eb26df342fc8f0914d323f08f4c19ea21e98e18f0a4ec18b7004299687f91daa8ee654ecee716ece6d4d6de5c9714c548768b1d44551b6be6195e2e9b

diff --git a/sys-cluster/ucx/ucx-1.5.2.ebuild b/sys-cluster/ucx/ucx-1.5.2.ebuild
new file mode 100644
index 000..55ec075ba42
--- /dev/null
+++ b/sys-cluster/ucx/ucx-1.5.2.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+DESCRIPTION="Unified Communication X"
+HOMEPAGE="http://www.openucx.org";
+SRC_URI="https://github.com/openucx/ucx/releases/download/v${PV}/${P}.tar.gz";
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="+numa +openmp"
+
+RDEPEND="
+   sys-libs/binutils-libs:=
+   numa? ( sys-process/numactl )
+"
+DEPEND="${RDEPEND}"
+
+src_configure() {
+   BASE_CFLAGS="" \
+   econf \
+   --disable-compiler-opt \
+   $(use_enable numa) \
+   $(use_enable openmp)
+}
+
+src_compile() {
+   BASE_CFLAGS="" emake
+}



[gentoo-commits] repo/gentoo:master commit in: sys-kernel/aufs-sources/

2019-02-06 Thread Justin Lecher
commit: 4ecf79fc323948d53e9f3053230b51dac10c1a0d
Author: Justin Lecher  gentoo  org>
AuthorDate: Wed Feb  6 18:42:24 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Wed Feb  6 18:43:29 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4ecf79fc

sys-kernel/aufs-sources: Bump to latest aufs, genpatches and linux release

Package-Manager: Portage-2.3.59, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-kernel/aufs-sources/Manifest   | 26 +++
 sys-kernel/aufs-sources/aufs-sources-4.20.0.ebuild | 84 ++
 sys-kernel/aufs-sources/aufs-sources-4.20.1.ebuild | 84 ++
 sys-kernel/aufs-sources/aufs-sources-4.20.2.ebuild | 84 ++
 sys-kernel/aufs-sources/aufs-sources-4.20.3.ebuild | 84 ++
 sys-kernel/aufs-sources/aufs-sources-4.20.4.ebuild | 84 ++
 sys-kernel/aufs-sources/aufs-sources-4.20.5.ebuild | 84 ++
 sys-kernel/aufs-sources/aufs-sources-4.20.6.ebuild | 84 ++
 sys-kernel/aufs-sources/aufs-sources-4.20.7.ebuild | 84 ++
 9 files changed, 698 insertions(+)

diff --git a/sys-kernel/aufs-sources/Manifest b/sys-kernel/aufs-sources/Manifest
index 7d6be2a98bb..a18aed7b09c 100644
--- a/sys-kernel/aufs-sources/Manifest
+++ b/sys-kernel/aufs-sources/Manifest
@@ -1,5 +1,6 @@
 DIST aufs-sources-4.14.56+_p20181217.tar.xz 185952 BLAKE2B 
287a45908e5659ed8eb7a9fe4b250baaa3d35891b9601e6d02f0ab4b74cb7a80cb71e77e01e53d10364f5545318cad8a870edb51ca3bd24d7aa04ee6112b3d8d
 SHA512 
3b9b52fbee9de5b02121b89b23ee0e8cf7ab7223f6d61715ee01502b33773f34dfe230eb4614819b870bc81b0b986625f9281e7a1ed2ee09c7a82ccd270e9e89
 DIST aufs-sources-4.19_p20181217.tar.xz 185712 BLAKE2B 
e5eca7fe564eae80ac6ce556042864d45c43b3eecf7109c930813eceb7eab11615db8ebe237e7c05773021028577fba6f37131c0afef751490834bbf0658fef1
 SHA512 
55f0788f34dcdfcf01def35e19c98bb020a396d312c0caf650049306d61a4decc4702c48915335c79b0672120efe58bf356985b40d9d110e0c321ff282f75a2b
+DIST aufs-sources-4.20_p20190204.tar.xz 186152 BLAKE2B 
e8b4cd4ffa192135b9b0282f2a40e60ff0a96967791a6ce96c48e735faa7c2b3b4d8a00cfcc2dcc86e3743d1cb704695da04bd36fd6949f79c8d6cb58e7eb14f
 SHA512 
2c527b5ab426d2f64e572b451d400ac5254e556a15e99df353e23c368bc0602c1ce3cc5cda3ee5c8061c69d1185a8a2bf06620748523b7f00e6c8959b00c90ec
 DIST genpatches-4.14-100.base.tar.xz 2365856 BLAKE2B 
c4a5c4d0ec84ae557c6779069bfe7a846cc86c0c6e9cd9149d7071e17a17abce01d86f348cab7399f488832d3b7a4980922484fb1f41bd3f897f1e700b86ff74
 SHA512 
65ca3501b7ec4d3c190f19d79f18770815b7010a8211d7cba51da09c58280bf33314987b0fddbab6d191b0cb681428a28212f527b807fd0a2fc8994e56b6e7af
 DIST genpatches-4.14-100.experimental.tar.xz 5220 BLAKE2B 
8f409ee4127ef0bcade20933fd5bfd4b1bc23135a28cdea676f54bfe7dddfd716142d51984921a9b5cf13422a0a9cb27e616710d12d881e11897a1874f1beb49
 SHA512 
854e2766ff11f067c8a4ca1318824f63240f0193ad74c3731a499cdc1aa672276fc87b2dfaf7ef0480c5a90d27fb4b3970271546fd9de77e65b38704ebf8f97d
 DIST genpatches-4.14-100.extras.tar.xz 17488 BLAKE2B 
ebed8f0992ea03154bfe052cd235389abe6c0f091f8d431695ec4f33b37b3cdf31fe76f4b04ba182ff0f86fb92a68198a5c9145446dda550dd8b85cd1bf7f7e5
 SHA512 
78e5c6492139d83b6b048dc1fdc30581ad143afd2176a625ad417097a76572a0f1ebba930d2eb6d13803ab74d5daf843cce4e0a7de6a187ca55ba907a7d2df6a
@@ -36,5 +37,30 @@ DIST genpatches-4.19-19.extras.tar.xz 17484 BLAKE2B 
e3b57dc25077418b254fdc6eb747
 DIST genpatches-4.19-20.base.tar.xz 615520 BLAKE2B 
f4620dfeb70ec0e406652e71ceffdd878b8fa7f3a6235decf8337572dcbaaeb2521b73b351dd59e93c7fe2e1f40d0dd853d30e157a599eb73115b8b339165623
 SHA512 
4fc47bac4ff23e0bc4550f8e6019e9b10f288251bc19d48bcba1ee0db1ced2f3788798eb1ee3c0d1e2127e8c48f8611b01f88ee59acb2135e9c848572421d945
 DIST genpatches-4.19-20.experimental.tar.xz 5216 BLAKE2B 
37f293162cc78f520867a16f0e356a5cb39975d95d5167b06ade5f31a89f3d593c60865abcff54676219fbbf000ca6220b0ea126d758a0a47c9cedd278944742
 SHA512 
a2a46c9c7a1c88411879705235a1316635642a1ef7d0c15e55e375d8caf0decfac4b57d695d2a1f00ff0693b19c209ea91ae650d8c97c07da1dacf98d7f0c725
 DIST genpatches-4.19-20.extras.tar.xz 17484 BLAKE2B 
eae292de6e308aa4c45a6282b0333a320042fe75cd325eca0257f6e38c2b71639cca24757b9fb40b284a5dc05b0900b4bf85fa111740f662a2e4309f8f5cba9e
 SHA512 
d8cf1e87b9814e1db1c2745a6a16fab46303042d621ed0de7c303d5a416f60e0ccea71106988fbb85cc65e6b6978c2dc0cb67704ca29b7c6aab631637c8d7913
+DIST genpatches-4.20-1.base.tar.xz 4008 BLAKE2B 
3d4e9420d01fce23b89d54487abb0dee4082be5df9ae6b1ebdf9b491bcdc73262c08d26e119527d3da1169c24d52236b47fd7b8089eae9bdc0f888e60225a6f3
 SHA512 
a8d75d79bfdff5a31478a147117e0e2630b42dd50ea3a07a8c7b52de4a768cc191a38a36c323a7ca2288eb64d48b74d862a7f827346944a252762ee9b3f566a8
+DIST genpatches-4.20-1.experimental.tar.xz 5220 BLAKE2B 
20417cb43be021ac767c0df7afa1bb4dd421fc08c49e0a5e53b91c431d3b95f0cd100bff92d0f827becf096431661bea2b1648c2465c9e336fa0519e6f3b8ee

[gentoo-commits] repo/gentoo:master commit in: sys-kernel/aufs-sources/

2019-02-02 Thread Justin Lecher
commit: cc699356249dfd403d1d3300e78c72c7289e5117
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Feb  2 09:46:55 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Feb  2 09:47:07 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=cc699356

sys-kernel/aufs-sources: Bump to latest genpatch and Linux release

Package-Manager: Portage-2.3.56, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-kernel/aufs-sources/Manifest   | 63 
 .../aufs-sources/aufs-sources-4.14.91.ebuild   | 84 --
 ...-4.14.90.ebuild => aufs-sources-4.14.92.ebuild} |  4 +-
 ...-4.14.87.ebuild => aufs-sources-4.14.93.ebuild} |  4 +-
 ...-4.14.88.ebuild => aufs-sources-4.14.95.ebuild} |  4 +-
 ...-4.14.89.ebuild => aufs-sources-4.14.96.ebuild} |  4 +-
 ...-4.14.90.ebuild => aufs-sources-4.14.97.ebuild} |  4 +-
 ...-4.19.10.ebuild => aufs-sources-4.19.14.ebuild} |  4 +-
 ...-4.19.12.ebuild => aufs-sources-4.19.15.ebuild} |  4 +-
 ...-4.19.13.ebuild => aufs-sources-4.19.16.ebuild} |  4 +-
 ...s-4.19.8.ebuild => aufs-sources-4.19.17.ebuild} |  4 +-
 ...-4.19.10.ebuild => aufs-sources-4.19.18.ebuild} |  4 +-
 ...-4.19.10.ebuild => aufs-sources-4.19.19.ebuild} |  4 +-
 sys-kernel/aufs-sources/aufs-sources-4.19.9.ebuild | 84 --
 14 files changed, 55 insertions(+), 220 deletions(-)

diff --git a/sys-kernel/aufs-sources/Manifest b/sys-kernel/aufs-sources/Manifest
index e596a7c3091..7d6be2a98bb 100644
--- a/sys-kernel/aufs-sources/Manifest
+++ b/sys-kernel/aufs-sources/Manifest
@@ -1,37 +1,40 @@
 DIST aufs-sources-4.14.56+_p20181217.tar.xz 185952 BLAKE2B 
287a45908e5659ed8eb7a9fe4b250baaa3d35891b9601e6d02f0ab4b74cb7a80cb71e77e01e53d10364f5545318cad8a870edb51ca3bd24d7aa04ee6112b3d8d
 SHA512 
3b9b52fbee9de5b02121b89b23ee0e8cf7ab7223f6d61715ee01502b33773f34dfe230eb4614819b870bc81b0b986625f9281e7a1ed2ee09c7a82ccd270e9e89
 DIST aufs-sources-4.19_p20181217.tar.xz 185712 BLAKE2B 
e5eca7fe564eae80ac6ce556042864d45c43b3eecf7109c930813eceb7eab11615db8ebe237e7c05773021028577fba6f37131c0afef751490834bbf0658fef1
 SHA512 
55f0788f34dcdfcf01def35e19c98bb020a396d312c0caf650049306d61a4decc4702c48915335c79b0672120efe58bf356985b40d9d110e0c321ff282f75a2b
+DIST genpatches-4.14-100.base.tar.xz 2365856 BLAKE2B 
c4a5c4d0ec84ae557c6779069bfe7a846cc86c0c6e9cd9149d7071e17a17abce01d86f348cab7399f488832d3b7a4980922484fb1f41bd3f897f1e700b86ff74
 SHA512 
65ca3501b7ec4d3c190f19d79f18770815b7010a8211d7cba51da09c58280bf33314987b0fddbab6d191b0cb681428a28212f527b807fd0a2fc8994e56b6e7af
+DIST genpatches-4.14-100.experimental.tar.xz 5220 BLAKE2B 
8f409ee4127ef0bcade20933fd5bfd4b1bc23135a28cdea676f54bfe7dddfd716142d51984921a9b5cf13422a0a9cb27e616710d12d881e11897a1874f1beb49
 SHA512 
854e2766ff11f067c8a4ca1318824f63240f0193ad74c3731a499cdc1aa672276fc87b2dfaf7ef0480c5a90d27fb4b3970271546fd9de77e65b38704ebf8f97d
+DIST genpatches-4.14-100.extras.tar.xz 17488 BLAKE2B 
ebed8f0992ea03154bfe052cd235389abe6c0f091f8d431695ec4f33b37b3cdf31fe76f4b04ba182ff0f86fb92a68198a5c9145446dda550dd8b85cd1bf7f7e5
 SHA512 
78e5c6492139d83b6b048dc1fdc30581ad143afd2176a625ad417097a76572a0f1ebba930d2eb6d13803ab74d5daf843cce4e0a7de6a187ca55ba907a7d2df6a
+DIST genpatches-4.14-102.base.tar.xz 2384780 BLAKE2B 
e4aacdad6e343937602ea8afc7a8f424e9d8d4d95b6d0a292ecefb6637eaf4bcb4a36534028b8a4dc330af99fa9f393def378c52c01a6b9128c8a261acffd413
 SHA512 
bca0461c7f2b9923c7aea9db4a889b5526b2c73bb3c338f2fe88b8e150c61c945d8ff7209007b3e64515f040e4f0f96026bdb6434fc59927a8d5e6654b87f0fe
+DIST genpatches-4.14-102.experimental.tar.xz 5220 BLAKE2B 
afd0d957c2181853b11a924db61f007279ff5df5377e2defbee68e4942cded4762c9d05246f181726f79e455c366c0c852ffa1508f2290ae6b16363b2e765347
 SHA512 
bdd72d25455a4e99654cd241b36e3db993d9b4ad2d4cc9899a2f41da398064b577df6dbbc441251e292be35463fa404658dab267144f4c6f614be471c0973efd
+DIST genpatches-4.14-102.extras.tar.xz 17496 BLAKE2B 
e20235bb1396981a2074905e613f8448d1a01c97070d6d4285d3fa223f2ccc9094fba8154d629b78ac55c5917d5d0a3ed126afc10dd3c0a2ac6ad8d763661d81
 SHA512 
6e734cd3a48d9b9a4c3ef8724e11dda156d2aa6ebd4696058da16b11073f2ff9e547117ae6772400e228b867366dd241f847a6580d0a17548842442ed89c7da9
+DIST genpatches-4.14-103.base.tar.xz 2401436 BLAKE2B 
e67babd06bcdb0768773b58b33c15e4c004a35bb288e0419b010c0951c9424d3a337f56730686a86be0fe8e378dcb12d1608aabc75d9f401f9139db30d88cf6c
 SHA512 
2796b82883b3eb77f49a6b9bf6a82a4db2f89eea7db30fc18c8627bf84ef47891b932cd80cacb9a73db52df88800e20ba76da81ec3d1e3b70c6ff674cfd11830
+DIST genpatches-4.14-103.experimental.tar.xz 5216 BLAKE2B 
d76bae1d0e142232829440d6b4c770b65f6772988ac45111f10ae3ed04ab940af1045ac6357dd74959424834de143a4acfac25d6410201ae5b9c3099900ddf82
 SHA512 
c8e96530f5dbdbc3470623c464b8c6a6e5610d496a58f77ca2f8e8a38af58604137d561c07bd5ec49c372cd9aca04d248c7cd57be848d09ffa9c9a461c9d5dd0
+DIST genpa

[gentoo-commits] repo/gentoo:master commit in: sys-auth/munge/

2019-01-02 Thread Justin Lecher
commit: b743752e1ce67f7d711bef41904dc88ad0ad6f91
Author: Justin Lecher  gentoo  org>
AuthorDate: Wed Jan  2 13:01:59 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Wed Jan  2 13:02:28 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b743752e

sys-auth/munge: add missing slot operator

Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-auth/munge/munge-0.5.13-r1.ebuild | 4 ++--
 sys-auth/munge/munge-0.5.13.ebuild| 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/sys-auth/munge/munge-0.5.13-r1.ebuild 
b/sys-auth/munge/munge-0.5.13-r1.ebuild
index b84cd36bf18..0c918321242 100644
--- a/sys-auth/munge/munge-0.5.13-r1.ebuild
+++ b/sys-auth/munge/munge-0.5.13-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -18,7 +18,7 @@ DEPEND="
app-arch/bzip2
sys-libs/zlib
gcrypt? ( dev-libs/libgcrypt:0 )
-   !gcrypt? ( dev-libs/openssl:0 )"
+   !gcrypt? ( dev-libs/openssl:0= )"
 RDEPEND="${DEPEND}"
 
 pkg_setup() {

diff --git a/sys-auth/munge/munge-0.5.13.ebuild 
b/sys-auth/munge/munge-0.5.13.ebuild
index fff766b94b0..0c918321242 100644
--- a/sys-auth/munge/munge-0.5.13.ebuild
+++ b/sys-auth/munge/munge-0.5.13.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -18,7 +18,7 @@ DEPEND="
app-arch/bzip2
sys-libs/zlib
gcrypt? ( dev-libs/libgcrypt:0 )
-   !gcrypt? ( dev-libs/openssl:0 )"
+   !gcrypt? ( dev-libs/openssl:0= )"
 RDEPEND="${DEPEND}"
 
 pkg_setup() {



[gentoo-commits] repo/gentoo:master commit in: dev-python/scrypt/

2019-01-02 Thread Justin Lecher
commit: db4cb0819203e3246ead256bd1790b2445738d55
Author: Justin Lecher  gentoo  org>
AuthorDate: Wed Jan  2 11:39:05 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Wed Jan  2 11:39:25 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=db4cb081

dev-python/scrypt: Add missing dep on openssl

Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 dev-python/scrypt/scrypt-0.8.0.ebuild | 6 --
 dev-python/scrypt/scrypt-0.8.6.ebuild | 9 ++---
 2 files changed, 10 insertions(+), 5 deletions(-)

diff --git a/dev-python/scrypt/scrypt-0.8.0.ebuild 
b/dev-python/scrypt/scrypt-0.8.0.ebuild
index e8a275ed360..76f189daa36 100644
--- a/dev-python/scrypt/scrypt-0.8.0.ebuild
+++ b/dev-python/scrypt/scrypt-0.8.0.ebuild
@@ -1,7 +1,8 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
+
 PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} pypy )
 
 inherit distutils-r1
@@ -15,6 +16,7 @@ KEYWORDS="amd64 ~arm ~arm64 x86"
 SLOT="0"
 IUSE="test doc"
 
+RDEPEND="dev-libs/openssl:0="
 DEPEND="${RDEPEND}
dev-python/setuptools[${PYTHON_USEDEP}]"
 
@@ -22,5 +24,5 @@ DEPEND="${RDEPEND}
 RESTRICT=test
 
 python_test() {
-   esetup.py test || die "tests failed"
+   esetup.py test
 }

diff --git a/dev-python/scrypt/scrypt-0.8.6.ebuild 
b/dev-python/scrypt/scrypt-0.8.6.ebuild
index aa80ad17031..c886c88b999 100644
--- a/dev-python/scrypt/scrypt-0.8.6.ebuild
+++ b/dev-python/scrypt/scrypt-0.8.6.ebuild
@@ -1,7 +1,8 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
+
 PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6,3_7} pypy )
 
 inherit distutils-r1
@@ -15,8 +16,10 @@ KEYWORDS="~amd64 ~arm ~arm64 ~x86"
 SLOT="0"
 IUSE="test doc"
 
-DEPEND="dev-python/setuptools[${PYTHON_USEDEP}]"
+RDEPEND="dev-libs/openssl:0="
+DEPEND="${RDEPEND}
+   dev-python/setuptools[${PYTHON_USEDEP}]"
 
 python_test() {
-   esetup.py test || die "tests failed"
+   esetup.py test
 }



[gentoo-commits] repo/gentoo:master commit in: www-servers/uwsgi/

2019-01-02 Thread Justin Lecher
commit: b7432a0728bf9fef07cfae4f6b2e53d2e8a4fc79
Author: Justin Lecher  gentoo  org>
AuthorDate: Wed Jan  2 10:50:58 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Wed Jan  2 11:39:24 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b7432a07

www-servers/uwsgi: add missing slot operator

Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 www-servers/uwsgi/uwsgi-2.0.17.1-r1.ebuild | 19 ---
 1 file changed, 12 insertions(+), 7 deletions(-)

diff --git a/www-servers/uwsgi/uwsgi-2.0.17.1-r1.ebuild 
b/www-servers/uwsgi/uwsgi-2.0.17.1-r1.ebuild
index 248929d1ca5..e9923f5a2eb 100644
--- a/www-servers/uwsgi/uwsgi-2.0.17.1-r1.ebuild
+++ b/www-servers/uwsgi/uwsgi-2.0.17.1-r1.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -79,17 +79,22 @@ REQUIRED_USE="|| ( ${LANG_SUPPORT_SIMPLE[@]} 
${LANG_SUPPORT_EXTENDED[@]} )
 # 2. General features
 # 3. Plugins
 # 4. Language/app support
-CDEPEND="sys-libs/zlib
+CDEPEND="
+   sys-libs/zlib
caps? ( sys-libs/libcap )
-   json? ( !yajl? ( dev-libs/jansson )
-   yajl? ( dev-libs/yajl ) )
+   json? (
+   !yajl? ( dev-libs/jansson )
+   yajl? ( dev-libs/yajl )
+   )
pcre? ( dev-libs/libpcre:3 )
ssl? (
-   !libressl? ( dev-libs/openssl:0 )
+   !libressl? ( dev-libs/openssl:0= )
libressl? ( dev-libs/libressl )
)
-   xml? ( !expat? ( dev-libs/libxml2 )
-   expat? ( dev-libs/expat ) )
+   xml? (
+   !expat? ( dev-libs/libxml2 )
+   expat? ( dev-libs/expat )
+   )
yaml? ( dev-libs/libyaml )
zeromq? ( net-libs/zeromq sys-apps/util-linux )
uwsgi_plugins_alarm_curl? ( net-misc/curl )



[gentoo-commits] repo/gentoo:master commit in: net-fs/netatalk/

2019-01-02 Thread Justin Lecher
commit: c5a1976a860651b98330e379fa4ecb9612410303
Author: Justin Lecher  gentoo  org>
AuthorDate: Wed Jan  2 10:56:07 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Wed Jan  2 11:39:24 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c5a1976a

net-fs/netatalk: add missing slot operator

Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 net-fs/netatalk/netatalk-3.1.11.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/net-fs/netatalk/netatalk-3.1.11.ebuild 
b/net-fs/netatalk/netatalk-3.1.11.ebuild
index 761f1c4f004..52f7bcd57e6 100644
--- a/net-fs/netatalk/netatalk-3.1.11.ebuild
+++ b/net-fs/netatalk/netatalk-3.1.11.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
@@ -34,7 +34,7 @@ CDEPEND="
kerberos? ( virtual/krb5 )
ldap? ( net-nds/openldap )
pam? ( virtual/pam )
-   ssl? ( dev-libs/openssl:0 )
+   ssl? ( dev-libs/openssl:0= )
tcpd? ( sys-apps/tcp-wrappers )
tracker? ( app-misc/tracker )
utils? ( ${PYTHON_DEPS} )



[gentoo-commits] repo/gentoo:master commit in: net-fs/netatalk/

2019-01-02 Thread Justin Lecher
commit: a435acc5f2e5d36c7b719168bb4326f152b51e83
Author: Justin Lecher  gentoo  org>
AuthorDate: Wed Jan  2 11:28:28 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Wed Jan  2 11:39:25 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a435acc5

net-fs/netatalk: Drop old

Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 net-fs/netatalk/Manifest   |   2 -
 net-fs/netatalk/netatalk-3.1.11.ebuild | 181 -
 net-fs/netatalk/netatalk-3.1.8.ebuild  | 179 
 3 files changed, 362 deletions(-)

diff --git a/net-fs/netatalk/Manifest b/net-fs/netatalk/Manifest
index 811d0746015..2672236988f 100644
--- a/net-fs/netatalk/Manifest
+++ b/net-fs/netatalk/Manifest
@@ -1,4 +1,2 @@
 DIST netatalk-3.1.10.tar.bz2 1811929 BLAKE2B 
9249b6e32ae8a5c3cefd461e182fa4972c3b65c19cc8f25f3eeaa00b8f2694ee2e03d1adf702e59a7a8da5d3f53d047c18f99a13bbfbc6d4b29b888ee20f1906
 SHA512 
dd1f49307b5298a784e2b487c0da94459632bab8353cf505cd4b104f4c0b55bbb77caf73e8b4c60af64018b345df78337accac3b5ed6cb5620309b163a86d32b
-DIST netatalk-3.1.11.tar.bz2 1812227 BLAKE2B 
a416d8fe96df6869ac63b0d41ede37e21f7a49528f12719a74497813749b5cf523c2f3cba5a5034cb2a978c2c83ea1d516a24b71f28fa584bc5c9261f129274c
 SHA512 
330e584f34b5f5e8714b3eca8e11adb93134cc0afa73e9bc25ddadcf3e9a96779a2979dfc08a64d343b148bc2d4e0e0f25b08d9c46d6b68057611d04ecfd06ea
 DIST netatalk-3.1.12.tar.bz2 1918312 BLAKE2B 
a0672ad769530d96b13a4bf74a1f17d86aa924f05e8185cf6b1bdbfe97fbcf23d36e2f3e5e32a32194a9d3020864e5afa2812f8fb947c68629b15c259a745bf3
 SHA512 
0b22abaf0084d5684ccc049225abb34caa32893ea8fe7eb67901fde94726f054149ce78d2da49cf06fe30360eb18b2edccff20f9ac69d5ab5105f6d2f4178759
-DIST netatalk-3.1.8.tar.bz2 1802404 BLAKE2B 
101285dc9c031b95a6e353a215ba119e6e25a7c3741e4ce40d86c21479fe33c2b268923d5ff060b97f3c35cb10c99d94c4da2fa4a089c8dfcef08a28044ed186
 SHA512 
734745743b2d5fe39f3d6716f377e6255d6a061e3c615a4fe30db388ec6d848f6db063d733dfa24ccf967f1e9042841bce4824f4bed391952c4304ee11e11b0d

diff --git a/net-fs/netatalk/netatalk-3.1.11.ebuild 
b/net-fs/netatalk/netatalk-3.1.11.ebuild
deleted file mode 100644
index 52f7bcd57e6..000
--- a/net-fs/netatalk/netatalk-3.1.11.ebuild
+++ /dev/null
@@ -1,181 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-AUTOTOOLS_AUTORECONF=yes
-
-inherit autotools-utils flag-o-matic multilib pam python-r1 systemd versionator
-
-DESCRIPTION="Open Source AFP server"
-HOMEPAGE="http://netatalk.sourceforge.net/";
-SRC_URI="mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range
 1-3)/${P}.tar.bz2"
-
-LICENSE="GPL-2 BSD"
-SLOT="0/17.0"
-KEYWORDS="~amd64 ~arm ~ppc ~ppc64 ~x86 ~x86-fbsd"
-IUSE="acl cracklib dbus debug kerberos ldap pam pgp quota samba +shadow ssl 
static-libs tracker tcpd +utils zeroconf"
-
-CDEPEND="
-   !app-editors/yudit
-   dev-libs/libevent:0=
-   >=dev-libs/libgcrypt-1.2.3:0
-   sys-apps/coreutils
-   >=sys-libs/db-4.2.52:=
-   sys-libs/tdb
-   acl? (
-   sys-apps/attr
-   sys-apps/acl
-   )
-   cracklib? ( sys-libs/cracklib )
-   dbus? ( sys-apps/dbus dev-libs/dbus-glib )
-   kerberos? ( virtual/krb5 )
-   ldap? ( net-nds/openldap )
-   pam? ( virtual/pam )
-   ssl? ( dev-libs/openssl:0= )
-   tcpd? ( sys-apps/tcp-wrappers )
-   tracker? ( app-misc/tracker )
-   utils? ( ${PYTHON_DEPS} )
-   zeroconf? ( net-dns/avahi[dbus] )
-"
-RDEPEND="${CDEPEND}
-   utils? (
-   dev-lang/perl
-   dev-python/dbus-python[${PYTHON_USEDEP}]
-   )"
-DEPEND="${CDEPEND}
-   virtual/yacc
-   sys-devel/flex"
-
-RESTRICT="test"
-
-REQUIRED_USE="
-   ldap? ( acl )
-   tracker? ( dbus )
-   utils? ( ${PYTHON_REQUIRED_USE} )"
-
-PATCHES=(
-   "${FILESDIR}"/${PN}-3.1.7-gentoo.patch
-   "${FILESDIR}"/${PN}-3.1.8-disable-ld-library-path.patch #564350
-)
-
-src_prepare() {
-   if ! use utils; then
-   sed \
-   -e "s:shell_utils::g" \
-   -i contrib/Makefile.am || die
-   fi
-   autotools-utils_src_prepare
-}
-
-src_configure() {
-   local myeconfargs=()
-
-   append-flags -fno-strict-aliasing
-
-   # Ignore --with-init-style=gentoo, we install the init.d by hand and we 
avoid having
-   # to sed the Makefiles to not do rc-update.
-   # TODO:
-   # systemd : --with-init-style=systemd
-   myeconfargs+=(
-   $(use_enable debug)
-   $(use_enable debug debugging)
-   $(use_enable pgp pgp-uam)
-   $(use_enable kerberos)
-   

[gentoo-commits] repo/gentoo:master commit in: net-misc/mosh/

2019-01-02 Thread Justin Lecher
commit: 48e29155e2ef045740d2a6f7eee4620eefe9307e
Author: Justin Lecher  gentoo  org>
AuthorDate: Wed Jan  2 10:50:16 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Wed Jan  2 11:39:24 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=48e29155

net-misc/mosh: Add missing dep

Closes: https://bugs.gentoo.org/669294
Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 net-misc/mosh/mosh-1.2.6.ebuild | 3 ++-
 net-misc/mosh/mosh-1.3.0.ebuild | 3 ++-
 net-misc/mosh/mosh-1.3.2.ebuild | 3 ++-
 net-misc/mosh/mosh-.ebuild  | 3 ++-
 4 files changed, 8 insertions(+), 4 deletions(-)

diff --git a/net-misc/mosh/mosh-1.2.6.ebuild b/net-misc/mosh/mosh-1.2.6.ebuild
index 0258c62a187..f51c7d11081 100644
--- a/net-misc/mosh/mosh-1.2.6.ebuild
+++ b/net-misc/mosh/mosh-1.2.6.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -19,6 +19,7 @@ REQUIRED_USE="
examples? ( client )"
 
 RDEPEND="
+   dev-libs/openssl:0=
dev-libs/protobuf:0=
sys-libs/ncurses:0=
virtual/ssh

diff --git a/net-misc/mosh/mosh-1.3.0.ebuild b/net-misc/mosh/mosh-1.3.0.ebuild
index 6998cb6bbd2..61fd42fd6e5 100644
--- a/net-misc/mosh/mosh-1.3.0.ebuild
+++ b/net-misc/mosh/mosh-1.3.0.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -19,6 +19,7 @@ REQUIRED_USE="
examples? ( client )"
 
 RDEPEND="
+   dev-libs/openssl:0=
dev-libs/protobuf:0=
sys-libs/ncurses:0=
virtual/ssh

diff --git a/net-misc/mosh/mosh-1.3.2.ebuild b/net-misc/mosh/mosh-1.3.2.ebuild
index 8e0a4705f40..66a90294d78 100644
--- a/net-misc/mosh/mosh-1.3.2.ebuild
+++ b/net-misc/mosh/mosh-1.3.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -19,6 +19,7 @@ REQUIRED_USE="
examples? ( client )"
 
 RDEPEND="
+   dev-libs/openssl:0=
dev-libs/protobuf:0=
sys-libs/ncurses:0=
virtual/ssh

diff --git a/net-misc/mosh/mosh-.ebuild b/net-misc/mosh/mosh-.ebuild
index 96d00779f30..a6ff3df93fa 100644
--- a/net-misc/mosh/mosh-.ebuild
+++ b/net-misc/mosh/mosh-.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -19,6 +19,7 @@ REQUIRED_USE="
examples? ( client )"
 
 RDEPEND="
+   dev-libs/openssl:0=
dev-libs/protobuf:0=
sys-libs/ncurses:0=
virtual/ssh



[gentoo-commits] repo/gentoo:master commit in: sci-libs/cholmod/

2019-01-02 Thread Justin Lecher
commit: 90a43dd12576f5a7c2f2472f3c537956d891ede4
Author: Justin Lecher  gentoo  org>
AuthorDate: Wed Jan  2 10:47:44 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Wed Jan  2 11:39:23 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=90a43dd1

sci-libs/cholmod: fix metis dep

Closes: https://bugs.gentoo.org/672000
Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sci-libs/cholmod/cholmod-2.1.2.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-libs/cholmod/cholmod-2.1.2.ebuild 
b/sci-libs/cholmod/cholmod-2.1.2.ebuild
index 4ac53c86196..2f32156ec94 100644
--- a/sci-libs/cholmod/cholmod-2.1.2.ebuild
+++ b/sci-libs/cholmod/cholmod-2.1.2.ebuild
@@ -22,7 +22,7 @@ RDEPEND="
metis? (
>=sci-libs/camd-2.3
>=sci-libs/ccolamd-2.8
-   || ( 

[gentoo-commits] repo/gentoo:master commit in: net-fs/netatalk/

2019-01-02 Thread Justin Lecher
commit: 702ecfb371c1cdf498527f970283cc77481fef3e
Author: Justin Lecher  gentoo  org>
AuthorDate: Wed Jan  2 11:24:44 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Wed Jan  2 11:39:25 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=702ecfb3

net-fs/netatalk: Version Bump

Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 net-fs/netatalk/Manifest   |   1 +
 net-fs/netatalk/netatalk-3.1.12.ebuild | 182 +
 2 files changed, 183 insertions(+)

diff --git a/net-fs/netatalk/Manifest b/net-fs/netatalk/Manifest
index a4106c8d48a..811d0746015 100644
--- a/net-fs/netatalk/Manifest
+++ b/net-fs/netatalk/Manifest
@@ -1,3 +1,4 @@
 DIST netatalk-3.1.10.tar.bz2 1811929 BLAKE2B 
9249b6e32ae8a5c3cefd461e182fa4972c3b65c19cc8f25f3eeaa00b8f2694ee2e03d1adf702e59a7a8da5d3f53d047c18f99a13bbfbc6d4b29b888ee20f1906
 SHA512 
dd1f49307b5298a784e2b487c0da94459632bab8353cf505cd4b104f4c0b55bbb77caf73e8b4c60af64018b345df78337accac3b5ed6cb5620309b163a86d32b
 DIST netatalk-3.1.11.tar.bz2 1812227 BLAKE2B 
a416d8fe96df6869ac63b0d41ede37e21f7a49528f12719a74497813749b5cf523c2f3cba5a5034cb2a978c2c83ea1d516a24b71f28fa584bc5c9261f129274c
 SHA512 
330e584f34b5f5e8714b3eca8e11adb93134cc0afa73e9bc25ddadcf3e9a96779a2979dfc08a64d343b148bc2d4e0e0f25b08d9c46d6b68057611d04ecfd06ea
+DIST netatalk-3.1.12.tar.bz2 1918312 BLAKE2B 
a0672ad769530d96b13a4bf74a1f17d86aa924f05e8185cf6b1bdbfe97fbcf23d36e2f3e5e32a32194a9d3020864e5afa2812f8fb947c68629b15c259a745bf3
 SHA512 
0b22abaf0084d5684ccc049225abb34caa32893ea8fe7eb67901fde94726f054149ce78d2da49cf06fe30360eb18b2edccff20f9ac69d5ab5105f6d2f4178759
 DIST netatalk-3.1.8.tar.bz2 1802404 BLAKE2B 
101285dc9c031b95a6e353a215ba119e6e25a7c3741e4ce40d86c21479fe33c2b268923d5ff060b97f3c35cb10c99d94c4da2fa4a089c8dfcef08a28044ed186
 SHA512 
734745743b2d5fe39f3d6716f377e6255d6a061e3c615a4fe30db388ec6d848f6db063d733dfa24ccf967f1e9042841bce4824f4bed391952c4304ee11e11b0d

diff --git a/net-fs/netatalk/netatalk-3.1.12.ebuild 
b/net-fs/netatalk/netatalk-3.1.12.ebuild
new file mode 100644
index 000..026d6442f0e
--- /dev/null
+++ b/net-fs/netatalk/netatalk-3.1.12.ebuild
@@ -0,0 +1,182 @@
+# Copyright 1999-2019 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+PYTHON_COMPAT=( python2_7 )
+
+AUTOTOOLS_AUTORECONF=yes
+
+inherit autotools flag-o-matic multilib pam python-r1 systemd
+
+DESCRIPTION="Open Source AFP server"
+HOMEPAGE="http://netatalk.sourceforge.net/";
+SRC_URI="mirror://sourceforge/project/${PN}/${PN}/$(ver_cut 1-3)/${P}.tar.bz2"
+
+LICENSE="GPL-2 BSD"
+SLOT="0/18.0"
+KEYWORDS="~amd64 ~arm ~ppc ~ppc64 ~x86 ~x86-fbsd"
+IUSE="acl cracklib dbus debug kerberos ldap pam pgp quota samba +shadow ssl 
static-libs tracker tcpd +utils zeroconf"
+
+CDEPEND="
+   !app-editors/yudit
+   dev-libs/libevent:0=
+   >=dev-libs/libgcrypt-1.2.3:0
+   sys-apps/coreutils
+   >=sys-libs/db-4.2.52:=
+   sys-libs/tdb
+   acl? (
+   sys-apps/attr
+   sys-apps/acl
+   )
+   cracklib? ( sys-libs/cracklib )
+   dbus? ( sys-apps/dbus dev-libs/dbus-glib )
+   kerberos? ( virtual/krb5 )
+   ldap? ( net-nds/openldap )
+   pam? ( virtual/pam )
+   ssl? ( dev-libs/openssl:0= )
+   tcpd? ( sys-apps/tcp-wrappers )
+   tracker? ( app-misc/tracker )
+   utils? ( ${PYTHON_DEPS} )
+   zeroconf? ( net-dns/avahi[dbus] )
+"
+RDEPEND="${CDEPEND}
+   utils? (
+   dev-lang/perl
+   dev-python/dbus-python[${PYTHON_USEDEP}]
+   )"
+DEPEND="${CDEPEND}
+   virtual/yacc
+   sys-devel/flex"
+
+RESTRICT="test"
+
+REQUIRED_USE="
+   ldap? ( acl )
+   tracker? ( dbus )
+   utils? ( ${PYTHON_REQUIRED_USE} )"
+
+PATCHES=(
+   "${FILESDIR}"/${PN}-3.1.7-gentoo.patch
+   "${FILESDIR}"/${PN}-3.1.8-disable-ld-library-path.patch #564350
+)
+
+src_prepare() {
+   default
+   append-flags -fno-strict-aliasing
+
+   if ! use utils; then
+   sed \
+   -e "s:shell_utils::g" \
+   -i contrib/Makefile.am || die
+   fi
+   eautoreconf
+}
+
+src_configure() {
+   local myeconfargs=()
+
+   # Ignore --with-init-style=gentoo, we install the init.d by hand and we 
avoid having
+   # to sed the Makefiles to not do rc-update.
+   # TODO:
+   # systemd : --with-init-style=systemd
+   myeconfargs+=(
+   $(use_enable debug)
+   $(use_enable debug debugging)
+   $(use_enable pgp pgp-uam)
+   $(use_enable kerberos)
+   $(use_enable kerberos krbV-uam)
+   $(use_enable quota)
+   $(use_enable tcpd tcp-wrappers)
+   

[gentoo-commits] repo/gentoo:master commit in: sci-libs/cholmod/

2019-01-02 Thread Justin Lecher
commit: 9b5bae412263f24a9842f3dc148820eb7e722ef8
Author: Justin Lecher  gentoo  org>
AuthorDate: Wed Jan  2 10:31:21 2019 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Wed Jan  2 10:31:42 2019 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9b5bae41

sci-libs/cholmod: fix metis dep

Closes: https://bugs.gentoo.org/672000
Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sci-libs/cholmod/cholmod-2.1.2.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-libs/cholmod/cholmod-2.1.2.ebuild 
b/sci-libs/cholmod/cholmod-2.1.2.ebuild
index a0460f5c4b6..4ac53c86196 100644
--- a/sci-libs/cholmod/cholmod-2.1.2.ebuild
+++ b/sci-libs/cholmod/cholmod-2.1.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Authors
+# Copyright 1999-2019 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
@@ -22,7 +22,7 @@ RDEPEND="
metis? (
>=sci-libs/camd-2.3
>=sci-libs/ccolamd-2.8
-   || ( sci-libs/metis sci-libs/parmetis ) )"
+   || ( 

[gentoo-commits] repo/gentoo:master commit in: sys-fs/aufs-util/

2018-12-31 Thread Justin Lecher
commit: 02774e05cf36a8d05aa50672e1955ba8e1fe2230
Author: Justin Lecher  gentoo  org>
AuthorDate: Mon Dec 31 15:54:10 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Mon Dec 31 15:54:42 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=02774e05

sys-fs/aufs-util: Don't strip through buildsystem

Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-fs/aufs-util/aufs-util-4.14_p20180709.ebuild | 1 +
 1 file changed, 1 insertion(+)

diff --git a/sys-fs/aufs-util/aufs-util-4.14_p20180709.ebuild 
b/sys-fs/aufs-util/aufs-util-4.14_p20180709.ebuild
index 4820dbcdfc7..d68a80251fa 100644
--- a/sys-fs/aufs-util/aufs-util-4.14_p20180709.ebuild
+++ b/sys-fs/aufs-util/aufs-util-4.14_p20180709.ebuild
@@ -42,5 +42,6 @@ src_prepare() {
 
tc-export CC AR
export HOSTCC=$(tc-getCC)
+   export STRIP=true
default
 }



[gentoo-commits] repo/gentoo:master commit in: sys-fs/aufs-util/

2018-12-31 Thread Justin Lecher
commit: c5f8bcffc3004207fc43c2d8853bccd2b1533252
Author: Justin Lecher  gentoo  org>
AuthorDate: Mon Dec 31 15:48:51 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Mon Dec 31 15:54:41 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c5f8bcff

sys-fs/aufs-util: Bump to latest aufs release

Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-fs/aufs-util/Manifest|  1 +
 sys-fs/aufs-util/aufs-util-4.14_p20180709.ebuild | 46 
 2 files changed, 47 insertions(+)

diff --git a/sys-fs/aufs-util/Manifest b/sys-fs/aufs-util/Manifest
index ff6ad01b7f4..0ec24458eda 100644
--- a/sys-fs/aufs-util/Manifest
+++ b/sys-fs/aufs-util/Manifest
@@ -2,5 +2,6 @@ DIST aufs-util-3.19_p20150323.tar.xz 97980 BLAKE2B 
ac826545100936b670640e0a277fb
 DIST aufs-util-3.19_p20150420.tar.xz 97980 BLAKE2B 
ade3ed060ab0fa0c37aebcfd52dfe7df3e7aa6b4936277952d128b096fc1c36699e0b7129873afcbeedaea019f12ac461812177bff82362a1a7ee6d261178b9f
 SHA512 
fe329e9efdbd7b585664b81c2bcd2d63ce5344d013eb2d76c6247e042c1cbe44a4a3ab6e8317734c06c24c1eeffe438d8f91a8e57d95b34e238b21a8b9389e8a
 DIST aufs-util-4.0_p20150420.tar.xz 97924 BLAKE2B 
e5daaf71e4f107f63b481dc5b8ba949a230b4b412cfac6744eb991589947743d2eaa2dc22c04684042292d472578471be3e71322a3cac15070616b36319dfd29
 SHA512 
9a988dcd3640e4797c731ab921161bccbd125fc23475e39681b3a398a238715cb85ac8fe8dfc64053af7478c8c33fe28b7e8cc3a2f97eb31e3c4049305043085
 DIST aufs-util-4.0_p20151116.tar.xz 98116 BLAKE2B 
fb1216879439d6972892f45e1401708172c94376e57eeb2eabb43512ea4e664c6d71af42c55a0ecff7d43a6c6a5d35b01f2de40dada5cf9f0070858b3826aed9
 SHA512 
35da6ccff82d7c74f1f9d680ddf17fc438811565b010ead274febac79b4352ee461d66e48b36123f0091d75a5d1c15ea078038a849ded11a20fd6859015abadc
+DIST aufs-util-4.14_p20180709.tar.xz 103724 BLAKE2B 
50df13812b090e5d8aa9a07009822f9a324091471243a76c9432ea22698a6167273e661f5ebf176fb3cc419fbe560e82ff73d6e3b37ed0a85a01e6315b06c8ac
 SHA512 
f6330dfc0ddc36102473d9931c62a7f9a5549a3ad2b78ababedf68d335ef02b155a90327dd0c7d446182530db755b9ff756533f90c540bf8aacca5eb117555df
 DIST aufs-util-4.1_p20161010.tar.xz 100124 BLAKE2B 
21055f22fae04097f0ee67375a1f779a912f503c9ce343890e05338f09603c2a188109c5bdd8dee522385fe154e31528528ea76f6b644f4a03246364c231521b
 SHA512 
2b9eacdafe7f81d84c4d0404e62988222365c00f4fe17abc9038ee6330695445fc49b3b5e5d531afbbbcf690d695297379ca15dedeb3729983d145a751714379
 DIST aufs-util-4.1_p20170130.tar.xz 100144 BLAKE2B 
d3032feeb787e3864247890c2b77468cb39ac1936cebc7e2044a2a58bd84817401b0cf7ab42413ca2c6307430552b49fb642d45e04c42f2729c0a5f1ccfb1589
 SHA512 
bf47829bdd93472a318e3eb1fd76332a95a42b3ec39b4d3392baac419ca70bd47b7b0c6209592ad70c284ee997a71e3448e79fa0ad6b4a6db16ffa0c47ed11ca

diff --git a/sys-fs/aufs-util/aufs-util-4.14_p20180709.ebuild 
b/sys-fs/aufs-util/aufs-util-4.14_p20180709.ebuild
new file mode 100644
index 000..4820dbcdfc7
--- /dev/null
+++ b/sys-fs/aufs-util/aufs-util-4.14_p20180709.ebuild
@@ -0,0 +1,46 @@
+# Copyright 1999-2018 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit eutils flag-o-matic linux-info multilib toolchain-funcs
+
+DESCRIPTION="Utilities are always necessary for aufs"
+HOMEPAGE="http://aufs.sourceforge.net/";
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz";
+# git archive -v --prefix=${P}/ 
--remote=git://git.code.sf.net/p/aufs/aufs-util aufs4.14 -o ${P}.tar
+# xz -ve9 *.tar
+
+SLOT="0"
+LICENSE="GPL-2"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+RDEPEND="
+   !sys-fs/aufs2
+   !

[gentoo-commits] repo/gentoo:master commit in: sys-fs/aufs-headers/

2018-12-31 Thread Justin Lecher
commit: 9df727eda44f4d8cab831ac7a0420bbb1f6cd094
Author: Justin Lecher  gentoo  org>
AuthorDate: Mon Dec 31 15:30:19 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Mon Dec 31 15:54:40 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9df727ed

sys-fs/aufs-headers: Bump to latest aufs release

Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-fs/aufs-headers/aufs-headers-4.1_p20170130.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sys-fs/aufs-headers/aufs-headers-4.1_p20170130.ebuild 
b/sys-fs/aufs-headers/aufs-headers-4.1_p20170130.ebuild
index be408d85c1c..90968e9d4ff 100644
--- a/sys-fs/aufs-headers/aufs-headers-4.1_p20170130.ebuild
+++ b/sys-fs/aufs-headers/aufs-headers-4.1_p20170130.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -7,7 +7,7 @@ inherit versionator
 
 DESCRIPTION="User space headers for aufs3"
 HOMEPAGE="http://aufs.sourceforge.net/";
-# Clone git://aufs.git.sourceforge.net/gitroot/aufs/aufs3-linux.git
+# Clone git://aufs.git.sourceforge.net/gitroot/aufs/aufs4-linux.git
 # Check aufs release Branch
 # Create .config
 # make headers_install INSTALL_HDR_PATH=${T}



[gentoo-commits] repo/gentoo:master commit in: sys-fs/aufs-headers/

2018-12-31 Thread Justin Lecher
commit: bd6704edaa84bf49a9416b398f140a769c91a626
Author: Justin Lecher  gentoo  org>
AuthorDate: Mon Dec 31 15:51:20 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Mon Dec 31 15:54:42 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=bd6704ed

sys-fs/aufs-headers: Drop old

Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-fs/aufs-headers/Manifest   |  5 
 .../aufs-headers-3.19_p20150323.ebuild | 27 --
 .../aufs-headers-3.19_p20150420.ebuild | 27 --
 .../aufs-headers/aufs-headers-4.0_p20150420.ebuild | 27 --
 .../aufs-headers/aufs-headers-4.0_p20151116.ebuild | 27 --
 .../aufs-headers/aufs-headers-4.1_p20161010.ebuild | 27 --
 6 files changed, 140 deletions(-)

diff --git a/sys-fs/aufs-headers/Manifest b/sys-fs/aufs-headers/Manifest
index 03c1c3f92b7..65a74379bf5 100644
--- a/sys-fs/aufs-headers/Manifest
+++ b/sys-fs/aufs-headers/Manifest
@@ -1,7 +1,2 @@
-DIST aufs-headers-3.19_p20150323.tar.xz 3136 BLAKE2B 
84c90f1068ceb070bc6ccda22dd423d32f09bb594196c767e65b4131f04565ce6f56861b1b536e5b4158e799cf531347aeb60801e6fddf0f651e3e93e0e6e573
 SHA512 
a137003b8b09ac3b929914dba27a13a9c2d803733ab7e073388b2a34f329f0b1ffcbe9646787738565ef28d3be77ca4a9bc520d759db4ca799cb2aa3643ee06f
-DIST aufs-headers-3.19_p20150420.tar.xz 3140 BLAKE2B 
fa41cffdea53264416a53dc6573f302c332df48b87c1a2c05e1cc85b07415685997f3226bb24af55df2ceb867a22396e75b65d1bb2371b674cb27ef82595d516
 SHA512 
257acbdd2439d7250e1903dbd7098d5a71749110caec6f6eecbc2e93b07859b5a751138a8000204ab735e3082ad15fdf249b132a7bac0ad6fbb0994213ab601d
-DIST aufs-headers-4.0_p20150420.tar.xz 3140 BLAKE2B 
9afbbdfa276fdd361481ee3588ef73e267fede346da7ddbb80ab521c25ee5f8aafbbf67e195d1bcf141daf91a308630dc9ab4fe82d5f7dd2f7629ea31ba32655
 SHA512 
fe1d42c66721cf78125070f29fc40dc3f88d84f8a59a35333a427f1d6e0353207ad595a8bd3e12591fcb73a54b76db122d2f2519c7db4dee0557f38dfdc0fe03
-DIST aufs-headers-4.0_p20151116.tar.xz 3136 BLAKE2B 
c5c08b5d160a717853da63f2cc4d0d3248fa250d6913aae44c14136915005df1882d4bedf41606bb5629922f6bd027d8165a62fd1dbebd59f0d9cdfbd7b4ee3a
 SHA512 
58205696948354f8d31230e6b709a136c720de2125bd00fe5929aaa1a70456bccf9c05cbca34412e0092cfd623aedefc8876ece3a7f6b02741a7b1e608aa0f65
 DIST aufs-headers-4.14_p20180709.tar.xz 3352 BLAKE2B 
31b1573de9305518ef7935d7166d720f055c4b70de48943910d9041f976f483759af1998e6aa1dccff89fad0ff391686c4e18c867e700fcd4bb1211cc0004cc6
 SHA512 
e2c4e90c555edc072ebcb348de50e5ec9ba6e2785758d10f14e43c8a03980dfadd58bc9cd37c811648bfabda37e6ed7d0bf36d7099edd26f40672b0ca0f2f226
-DIST aufs-headers-4.1_p20161010.tar.xz 3140 BLAKE2B 
bff9b39380a29d5a2f6c385dc69b882549190a63870c78643cc160919dbda8079bf8785ae22fde6c522591cb1343367b645712c6ec44f2ac760d0f3dfd653a6d
 SHA512 
d47fe0666c4a1d6d9a78cbd94f790d46fee08bf88a17035ab59b7bb488dc1d8239c612bde06c580edd6227d82993ddbe84a5d576f3daae4d83dd51800fe26b03
 DIST aufs-headers-4.1_p20170130.tar.xz 3136 BLAKE2B 
cda05eed3429c84dae70a5c88600e4369d4997cca5d0b8f21c82dcb3449b0b88ac27b3e3216034272a6f2ff53aa455b3eb9dc23fc7cc77473aa53943340df9c7
 SHA512 
d8099a59784739b76eac74de7113754981b6d2d4155eaf42f9d36ea4b6c84f6f49cd96ce0b9e19b2507674cd9b91667fe8520f1cfb7ff0e1d5c58596e784c6d0

diff --git a/sys-fs/aufs-headers/aufs-headers-3.19_p20150323.ebuild 
b/sys-fs/aufs-headers/aufs-headers-3.19_p20150323.ebuild
deleted file mode 100644
index 96d6c06c1da..000
--- a/sys-fs/aufs-headers/aufs-headers-3.19_p20150323.ebuild
+++ /dev/null
@@ -1,27 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit versionator
-
-DESCRIPTION="User space headers for aufs3"
-HOMEPAGE="http://aufs.sourceforge.net/";
-# Clone git://aufs.git.sourceforge.net/gitroot/aufs/aufs3-linux.git
-# Check aufs release Branch
-# Create .config
-# make headers_install INSTALL_HDR_PATH=${T}
-# find ${T} -type f \( ! -name "*aufs*" \) -delete
-# find ${T} -type d -empty -delete
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz";
-
-SLOT="0"
-LICENSE="GPL-2"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-S="${WORKDIR}"
-
-src_install() {
-   doheader -r include/*
-}

diff --git a/sys-fs/aufs-headers/aufs-headers-3.19_p20150420.ebuild 
b/sys-fs/aufs-headers/aufs-headers-3.19_p20150420.ebuild
deleted file mode 100644
index 96d6c06c1da..000
--- a/sys-fs/aufs-headers/aufs-headers-3.19_p20150420.ebuild
+++ /dev/null
@@ -1,27 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit versionator
-
-DESCRIPTION="User space headers for aufs3"
-HOMEPAGE="http://aufs.sourceforge.net/";
-# Clone git://aufs.git.sourceforge.net/gitroot/aufs/aufs3-linu

[gentoo-commits] repo/gentoo:master commit in: sys-fs/aufs-headers/

2018-12-31 Thread Justin Lecher
commit: aa88081f4ace31d22ac3db9dc1f86ca0884f338b
Author: Justin Lecher  gentoo  org>
AuthorDate: Mon Dec 31 15:45:16 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Mon Dec 31 15:54:41 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=aa88081f

sys-fs/aufs-headers: EAPI bump

Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-fs/aufs-headers/aufs-headers-4.14_p20180709.ebuild | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/sys-fs/aufs-headers/aufs-headers-4.14_p20180709.ebuild 
b/sys-fs/aufs-headers/aufs-headers-4.14_p20180709.ebuild
index 90968e9d4ff..1a3ae3719eb 100644
--- a/sys-fs/aufs-headers/aufs-headers-4.14_p20180709.ebuild
+++ b/sys-fs/aufs-headers/aufs-headers-4.14_p20180709.ebuild
@@ -1,9 +1,7 @@
 # Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=6
-
-inherit versionator
+EAPI=7
 
 DESCRIPTION="User space headers for aufs3"
 HOMEPAGE="http://aufs.sourceforge.net/";



[gentoo-commits] repo/gentoo:master commit in: sys-fs/aufs-util/files/, sys-fs/aufs-util/

2018-12-31 Thread Justin Lecher
commit: 54a4040b0b9c03ccb72eedeff108cc0d91972950
Author: Justin Lecher  gentoo  org>
AuthorDate: Mon Dec 31 15:50:15 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Mon Dec 31 15:54:42 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=54a4040b

sys-fs/aufs-util: Drop old

Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-fs/aufs-util/Manifest  |  5 ---
 sys-fs/aufs-util/aufs-util-3.19_p20150323.ebuild   | 45 -
 sys-fs/aufs-util/aufs-util-3.19_p20150420.ebuild   | 45 -
 sys-fs/aufs-util/aufs-util-4.0_p20150420.ebuild| 46 --
 sys-fs/aufs-util/aufs-util-4.0_p20151116.ebuild| 45 -
 sys-fs/aufs-util/aufs-util-4.1_p20161010.ebuild| 46 --
 .../files/aufs-util-4.0_p20150420-version.patch| 16 
 7 files changed, 248 deletions(-)

diff --git a/sys-fs/aufs-util/Manifest b/sys-fs/aufs-util/Manifest
index 0ec24458eda..b53c4ac21ed 100644
--- a/sys-fs/aufs-util/Manifest
+++ b/sys-fs/aufs-util/Manifest
@@ -1,7 +1,2 @@
-DIST aufs-util-3.19_p20150323.tar.xz 97980 BLAKE2B 
ac826545100936b670640e0a277fb1355329c869f887bffeca400d774fb627c0ce44126e2dcf85b65976302fbcb7b356c8bb734814c44f6259d62437da2ad633
 SHA512 
49f138538ea8997ddb6bedf368815f16a5d42a49b5f72c1548cd9c3718bb00831224e80e9b4dd8c984a6fb40b11223e317757020076d432117541f7d361b892b
-DIST aufs-util-3.19_p20150420.tar.xz 97980 BLAKE2B 
ade3ed060ab0fa0c37aebcfd52dfe7df3e7aa6b4936277952d128b096fc1c36699e0b7129873afcbeedaea019f12ac461812177bff82362a1a7ee6d261178b9f
 SHA512 
fe329e9efdbd7b585664b81c2bcd2d63ce5344d013eb2d76c6247e042c1cbe44a4a3ab6e8317734c06c24c1eeffe438d8f91a8e57d95b34e238b21a8b9389e8a
-DIST aufs-util-4.0_p20150420.tar.xz 97924 BLAKE2B 
e5daaf71e4f107f63b481dc5b8ba949a230b4b412cfac6744eb991589947743d2eaa2dc22c04684042292d472578471be3e71322a3cac15070616b36319dfd29
 SHA512 
9a988dcd3640e4797c731ab921161bccbd125fc23475e39681b3a398a238715cb85ac8fe8dfc64053af7478c8c33fe28b7e8cc3a2f97eb31e3c4049305043085
-DIST aufs-util-4.0_p20151116.tar.xz 98116 BLAKE2B 
fb1216879439d6972892f45e1401708172c94376e57eeb2eabb43512ea4e664c6d71af42c55a0ecff7d43a6c6a5d35b01f2de40dada5cf9f0070858b3826aed9
 SHA512 
35da6ccff82d7c74f1f9d680ddf17fc438811565b010ead274febac79b4352ee461d66e48b36123f0091d75a5d1c15ea078038a849ded11a20fd6859015abadc
 DIST aufs-util-4.14_p20180709.tar.xz 103724 BLAKE2B 
50df13812b090e5d8aa9a07009822f9a324091471243a76c9432ea22698a6167273e661f5ebf176fb3cc419fbe560e82ff73d6e3b37ed0a85a01e6315b06c8ac
 SHA512 
f6330dfc0ddc36102473d9931c62a7f9a5549a3ad2b78ababedf68d335ef02b155a90327dd0c7d446182530db755b9ff756533f90c540bf8aacca5eb117555df
-DIST aufs-util-4.1_p20161010.tar.xz 100124 BLAKE2B 
21055f22fae04097f0ee67375a1f779a912f503c9ce343890e05338f09603c2a188109c5bdd8dee522385fe154e31528528ea76f6b644f4a03246364c231521b
 SHA512 
2b9eacdafe7f81d84c4d0404e62988222365c00f4fe17abc9038ee6330695445fc49b3b5e5d531afbbbcf690d695297379ca15dedeb3729983d145a751714379
 DIST aufs-util-4.1_p20170130.tar.xz 100144 BLAKE2B 
d3032feeb787e3864247890c2b77468cb39ac1936cebc7e2044a2a58bd84817401b0cf7ab42413ca2c6307430552b49fb642d45e04c42f2729c0a5f1ccfb1589
 SHA512 
bf47829bdd93472a318e3eb1fd76332a95a42b3ec39b4d3392baac419ca70bd47b7b0c6209592ad70c284ee997a71e3448e79fa0ad6b4a6db16ffa0c47ed11ca

diff --git a/sys-fs/aufs-util/aufs-util-3.19_p20150323.ebuild 
b/sys-fs/aufs-util/aufs-util-3.19_p20150323.ebuild
deleted file mode 100644
index 00e8f53be18..000
--- a/sys-fs/aufs-util/aufs-util-3.19_p20150323.ebuild
+++ /dev/null
@@ -1,45 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit flag-o-matic linux-info multilib toolchain-funcs
-
-DESCRIPTION="Utilities are always necessary for aufs"
-HOMEPAGE="http://aufs.sourceforge.net/";
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz";
-# git archive -v --prefix=${P}/ 
--remote=git://git.code.sf.net/p/aufs/aufs-util aufs3.14 -o ${P}.tar
-# xz -ve9 *.tar
-
-SLOT="0"
-LICENSE="GPL-2"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-RDEPEND="
-   !sys-fs/aufs2
-   !http://aufs.sourceforge.net/";
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz";
-# git archive -v --prefix=${P}/ 
--remote=git://git.code.sf.net/p/aufs/aufs-util aufs3.14 -o ${P}.tar
-# xz -ve9 *.tar
-
-SLOT="0"
-LICENSE="GPL-2"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-RDEPEND="
-   !sys-fs/aufs2
-   !http://aufs.sourceforge.net/";
-SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz";
-# git archive -v --prefix=${P}/ 
--remote=git://git.code.sf.net/p/aufs/aufs-util aufs4.0 -o ${P}.tar
-# xz -ve9 *.tar
-
-SLOT="0"
-LICENSE="GPL-2"
-KEYWORDS="amd64 x86"
-IUS

[gentoo-commits] repo/gentoo:master commit in: sys-fs/aufs-headers/

2018-12-31 Thread Justin Lecher
commit: 0985de5a9a1a56b955bbe4c68ee3359daa337dea
Author: Justin Lecher  gentoo  org>
AuthorDate: Mon Dec 31 15:38:49 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Mon Dec 31 15:54:40 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0985de5a

sys-fs/aufs-headers: Bump to latest aufs release

Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-fs/aufs-headers/Manifest| 1 +
 ...-headers-4.1_p20170130.ebuild => aufs-headers-4.14_p20180709.ebuild} | 0
 sys-fs/aufs-headers/aufs-headers-4.1_p20170130.ebuild   | 2 +-
 3 files changed, 2 insertions(+), 1 deletion(-)

diff --git a/sys-fs/aufs-headers/Manifest b/sys-fs/aufs-headers/Manifest
index e2580bc8f50..03c1c3f92b7 100644
--- a/sys-fs/aufs-headers/Manifest
+++ b/sys-fs/aufs-headers/Manifest
@@ -2,5 +2,6 @@ DIST aufs-headers-3.19_p20150323.tar.xz 3136 BLAKE2B 
84c90f1068ceb070bc6ccda22dd
 DIST aufs-headers-3.19_p20150420.tar.xz 3140 BLAKE2B 
fa41cffdea53264416a53dc6573f302c332df48b87c1a2c05e1cc85b07415685997f3226bb24af55df2ceb867a22396e75b65d1bb2371b674cb27ef82595d516
 SHA512 
257acbdd2439d7250e1903dbd7098d5a71749110caec6f6eecbc2e93b07859b5a751138a8000204ab735e3082ad15fdf249b132a7bac0ad6fbb0994213ab601d
 DIST aufs-headers-4.0_p20150420.tar.xz 3140 BLAKE2B 
9afbbdfa276fdd361481ee3588ef73e267fede346da7ddbb80ab521c25ee5f8aafbbf67e195d1bcf141daf91a308630dc9ab4fe82d5f7dd2f7629ea31ba32655
 SHA512 
fe1d42c66721cf78125070f29fc40dc3f88d84f8a59a35333a427f1d6e0353207ad595a8bd3e12591fcb73a54b76db122d2f2519c7db4dee0557f38dfdc0fe03
 DIST aufs-headers-4.0_p20151116.tar.xz 3136 BLAKE2B 
c5c08b5d160a717853da63f2cc4d0d3248fa250d6913aae44c14136915005df1882d4bedf41606bb5629922f6bd027d8165a62fd1dbebd59f0d9cdfbd7b4ee3a
 SHA512 
58205696948354f8d31230e6b709a136c720de2125bd00fe5929aaa1a70456bccf9c05cbca34412e0092cfd623aedefc8876ece3a7f6b02741a7b1e608aa0f65
+DIST aufs-headers-4.14_p20180709.tar.xz 3352 BLAKE2B 
31b1573de9305518ef7935d7166d720f055c4b70de48943910d9041f976f483759af1998e6aa1dccff89fad0ff391686c4e18c867e700fcd4bb1211cc0004cc6
 SHA512 
e2c4e90c555edc072ebcb348de50e5ec9ba6e2785758d10f14e43c8a03980dfadd58bc9cd37c811648bfabda37e6ed7d0bf36d7099edd26f40672b0ca0f2f226
 DIST aufs-headers-4.1_p20161010.tar.xz 3140 BLAKE2B 
bff9b39380a29d5a2f6c385dc69b882549190a63870c78643cc160919dbda8079bf8785ae22fde6c522591cb1343367b645712c6ec44f2ac760d0f3dfd653a6d
 SHA512 
d47fe0666c4a1d6d9a78cbd94f790d46fee08bf88a17035ab59b7bb488dc1d8239c612bde06c580edd6227d82993ddbe84a5d576f3daae4d83dd51800fe26b03
 DIST aufs-headers-4.1_p20170130.tar.xz 3136 BLAKE2B 
cda05eed3429c84dae70a5c88600e4369d4997cca5d0b8f21c82dcb3449b0b88ac27b3e3216034272a6f2ff53aa455b3eb9dc23fc7cc77473aa53943340df9c7
 SHA512 
d8099a59784739b76eac74de7113754981b6d2d4155eaf42f9d36ea4b6c84f6f49cd96ce0b9e19b2507674cd9b91667fe8520f1cfb7ff0e1d5c58596e784c6d0

diff --git a/sys-fs/aufs-headers/aufs-headers-4.1_p20170130.ebuild 
b/sys-fs/aufs-headers/aufs-headers-4.14_p20180709.ebuild
similarity index 100%
copy from sys-fs/aufs-headers/aufs-headers-4.1_p20170130.ebuild
copy to sys-fs/aufs-headers/aufs-headers-4.14_p20180709.ebuild

diff --git a/sys-fs/aufs-headers/aufs-headers-4.1_p20170130.ebuild 
b/sys-fs/aufs-headers/aufs-headers-4.1_p20170130.ebuild
index 90968e9d4ff..9cdf2fc061a 100644
--- a/sys-fs/aufs-headers/aufs-headers-4.1_p20170130.ebuild
+++ b/sys-fs/aufs-headers/aufs-headers-4.1_p20170130.ebuild
@@ -7,7 +7,7 @@ inherit versionator
 
 DESCRIPTION="User space headers for aufs3"
 HOMEPAGE="http://aufs.sourceforge.net/";
-# Clone git://aufs.git.sourceforge.net/gitroot/aufs/aufs4-linux.git
+# Clone git://aufs.git.sourceforge.net/gitroot/aufs/aufs3-linux.git
 # Check aufs release Branch
 # Create .config
 # make headers_install INSTALL_HDR_PATH=${T}



[gentoo-commits] repo/gentoo:master commit in: sci-libs/cholmod/

2018-12-31 Thread Justin Lecher
commit: 4aeb0ca94f49f040072b61eb28abc65bca3d1b00
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Dec 30 19:19:39 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Mon Dec 31 09:43:08 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=4aeb0ca9

sci-libs/cholmod: Update HOMPAGE

Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sci-libs/cholmod/cholmod-2.1.2.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-libs/cholmod/cholmod-2.1.2.ebuild 
b/sci-libs/cholmod/cholmod-2.1.2.ebuild
index 32bd49515a4..a0460f5c4b6 100644
--- a/sci-libs/cholmod/cholmod-2.1.2.ebuild
+++ b/sci-libs/cholmod/cholmod-2.1.2.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
@@ -6,7 +6,7 @@ EAPI=5
 inherit autotools-utils multilib toolchain-funcs
 
 DESCRIPTION="Sparse Cholesky factorization and update/downdate library"
-HOMEPAGE="http://www.cise.ufl.edu/research/sparse/cholmod/";
+HOMEPAGE="http://faculty.cse.tamu.edu/davis/suitesparse.html";
 SRC_URI="https://dev.gentoo.org/~bicatali/distfiles/${P}.tar.bz2";
 
 LICENSE="minimal? ( LGPL-2.1 ) !minimal? ( GPL-2 )"



[gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/

2018-12-31 Thread Justin Lecher
commit: 932a89023ff2348ea6db521bc3a4faacc38854b2
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Dec 30 20:05:15 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Mon Dec 31 09:44:05 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=932a8902

sci-biology/rebase: Version Bump

Package-Manager: Portage-2.3.53, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sci-biology/rebase/Manifest   |  1 +
 sci-biology/rebase/rebase-1901.ebuild | 45 +++
 2 files changed, 46 insertions(+)

diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 0d935c9e58c..175ef0c271a 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -5,3 +5,4 @@ DIST rebase-1704.tar.xz 124351900 BLAKE2B 
bdbda714cc07f744b56c83b80a1b0f0a724a99
 DIST rebase-1803.tar.xz 152581448 BLAKE2B 
7907f0aee9e202f062f5ec4b5e4a112cd0fb3900b3d65dc57ffe4832c5aac088f50c2661f1b9c1bb8b57e7b4f6d453bec2899b460383d06b4e679da13e92aad2
 SHA512 
ab718e87c33c975bc6a93d3c6be130c9751612b744dc5451bcfde5c10d3d9d68ed4a4d921fff1f48063bfa2e9f3c8a016d4e5e0afa4eb7e4131511767608534b
 DIST rebase-1806.tar.xz 161844712 BLAKE2B 
901167b502b85e88eaa9a8886c5ccac8bf1ec16a7736694b90f896bd4d87ae3792d09f6b154118a6063e30b94a5633b37a7811aefc1d39467d0043d887aeb64a
 SHA512 
9c9c0ef89c8f8e43516c052a06395d61c423b53a79553ceccd992bf72872ece44696091c11c816213b93532aac54a476fe87475f4f67baaa87bc50f64e847d48
 DIST rebase-1810.tar.xz 173538148 BLAKE2B 
4630d6a2addbb95e70cff73c8f81552545c81be2893dd9f38d19d8bc2fd7ecf4340441498187b654a05012d4dafbd5ad0634e3281f7aed1ee61618308a2325a5
 SHA512 
641ed61b14970e9804e98abab4e982aeaff378638730964ba162dffacea1c5869e4b1202462f422307d039e1bc6053403c801273f1ca9021c38f29e68a7bfae2
+DIST rebase-1901.tar.xz 182532548 BLAKE2B 
5ac8d26ab057bcd21dc9c57abeb226ac70cfabb156b48a51f820789626257be55bb21c9eb2099e6e55b1cfe3691480df0ec9b3f4b18b50ba2712b986c6d057b4
 SHA512 
1e3553e59c3520190754cb40bb0900e466d9ffd206e6460d3262a7d7d2af8aab0e28f3e60187665362824fa3730211c0e2119016ce5fed49095f9de46c7f25d4

diff --git a/sci-biology/rebase/rebase-1901.ebuild 
b/sci-biology/rebase/rebase-1901.ebuild
new file mode 100644
index 000..f85a4b1698b
--- /dev/null
+++ b/sci-biology/rebase/rebase-1901.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2018 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com";
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz";
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris 
~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+   if use emboss; then
+   echo; einfo "Indexing Rebase for usage with EMBOSS."
+   mkdir REBASE || die
+   EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+   -protofile proto.${MY_PV} -equivalences \
+   || die "Indexing Rebase failed."
+   echo
+   fi
+}
+
+src_install() {
+   if ! use minimal; then
+   insinto /usr/share/${PN}
+   doins withrefm.${MY_PV} proto.${MY_PV}
+   fi
+   newdoc REBASE.DOC README
+   if use emboss; then
+   insinto /usr/share/EMBOSS/data/REBASE
+   doins REBASE/embossre.{enz,ref,sup}
+   insinto /usr/share/EMBOSS/data
+   doins REBASE/embossre.equ
+   fi
+}



[gentoo-commits] repo/gentoo:master commit in: sys-kernel/aufs-sources/

2018-12-30 Thread Justin Lecher
commit: 410f924ca4b271b71ed23472a59c3f11438f2436
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Dec 30 11:36:59 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Dec 30 11:37:11 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=410f924c

sys-kernel/aufs-sources: Bump to latest aufs, genpatches and linux release

Closes: https://bugs.gentoo.org/667374
Closes: https://bugs.gentoo.org/667374
Package-Manager: Portage-2.3.51, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-kernel/aufs-sources/Manifest   | 125 ++---
 .../aufs-sources/aufs-sources-4.14.52.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.14.65.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.14.71.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.14.72.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.14.73.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.14.74.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.14.75.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.14.76.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.14.77.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.14.78.ebuild   |  84 --
 ...-4.14.79.ebuild => aufs-sources-4.14.83.ebuild} |   4 +-
 ...-4.18.17.ebuild => aufs-sources-4.14.87.ebuild} |   4 +-
 ...-4.14.80.ebuild => aufs-sources-4.14.88.ebuild} |   4 +-
 ...-4.14.81.ebuild => aufs-sources-4.14.89.ebuild} |   4 +-
 ...-4.14.79.ebuild => aufs-sources-4.14.90.ebuild} |   4 +-
 ...-4.14.79.ebuild => aufs-sources-4.14.91.ebuild} |   4 +-
 .../aufs-sources/aufs-sources-4.18.10.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.18.11.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.18.12.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.18.13.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.18.14.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.18.15.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.18.16.ebuild   |  84 --
 .../aufs-sources/aufs-sources-4.18.18-r1.ebuild|  84 --
 .../aufs-sources/aufs-sources-4.18.19.ebuild   |  84 --
 sys-kernel/aufs-sources/aufs-sources-4.18.9.ebuild |  84 --
 ...s-4.19.1.ebuild => aufs-sources-4.19.10.ebuild} |   4 +-
 ...s-4.19.2.ebuild => aufs-sources-4.19.12.ebuild} |   4 +-
 ...s-4.19.0.ebuild => aufs-sources-4.19.13.ebuild} |   4 +-
 ...es-4.19.0.ebuild => aufs-sources-4.19.8.ebuild} |   4 +-
 ...es-4.19.0.ebuild => aufs-sources-4.19.9.ebuild} |   4 +-
 32 files changed, 57 insertions(+), 1792 deletions(-)

diff --git a/sys-kernel/aufs-sources/Manifest b/sys-kernel/aufs-sources/Manifest
index 22363ae5a16..e596a7c3091 100644
--- a/sys-kernel/aufs-sources/Manifest
+++ b/sys-kernel/aufs-sources/Manifest
@@ -1,92 +1,37 @@
-DIST aufs-sources-4.14.56+_p20181008.tar.xz 184372 BLAKE2B 
145c9aea8918702ad8eb6a0a76e3a107f168c7136198ac01ffe1372adcfb14387558a71445f1f9e7dc9642ef3c58b78f5e2fccf29931cf7f190abd43156d0c54
 SHA512 
f39b202b3b7c2eab26fae58c034d901258a951d3c63dc864bd7f8c866da5767133eab61eb9c56fe2eeac0f0353cb1d965d5d190ac76cc1d334795891b8246e9c
-DIST aufs-sources-4.14.56+_p20181112.tar.xz 184600 BLAKE2B 
d3f95aab0be1077ba00f1a165640627a1500603537d38cb4f920eba27181c24dd63554cb0717074194efe1cd5bf4e0bd20f8c99f7f048c65088c94d6ae38a8d7
 SHA512 
97fa2447859918f5b49d54582ac7d7fe4171048f3a437d40ebc2dc39433949dae01a46e0975ad1eebbeb3fa687e2cd145892a6bd72bb63fda34f27d3597916b6
-DIST aufs-sources-4.14_p20180702.tar.xz 182024 BLAKE2B 
f57a26a6d28b3ca347e2aa96d1b54579c3f195b9020f26ca618f228e061d6d9d2c1d93269a2927753c407b83cae91602cc751a345c20f4f6c08a93928160a1f6
 SHA512 
423e31e290e92dae1cd57e2caabc31ccc2026a027bdaa363d37686b5c0087da5346785ebe0560d5a9cb6def0c019d41734e0ede84a6fe1472ab0581a9d6e3c27
-DIST aufs-sources-4.18.11+_p20181008.tar.xz 184324 BLAKE2B 
e75f1bcb4fd020e2307a82896880a6bec8892d8d145ab740e4b72dbed0d2152a4e9b732a017a44fc9a2de6159ca30bfb709108567048e0ed7f16352ed57609d2
 SHA512 
5c4f3fa430783263f52dcdf71bf1754b8b90c10044a8e3740d9f9bdd3afcf0845039ae6ea61598e2bb8a0766dc7140ab6787d3e923f5987a781954cc3a9b614c
-DIST aufs-sources-4.18.11+_p20181112.tar.xz 184644 BLAKE2B 
2ad62e6b4f8419f0ada04b2856cc82bdc823af8f38321a6ec318ae2b21f7c5deb024183631877d25a2a4712a1fbfee0f82dd4898cd093bae4121fbc854e609fb
 SHA512 
519e48b75580e431398d0d8d797bb8ebcc113390c284684340de646748a4d435ff890dc1653831c88a1373c899caa1f5132a96b3912c0383e261d7c3fa948ea7
-DIST aufs-sources-4.18_p20181008.tar.xz 184396 BLAKE2B 
fb5939732a21a981be75fa337bb1311a3d14d7973dc6fa6ad021997c5f9a7bbf94cdb65865fd276b61c2b8d90bf1e0795cb4073914c0877946705663aca64c5d
 SHA512 
f838272b2673088458f8993c101cd6f89611f217224afc273abdfcac855f2ecebc51460895bf2d19748751ae931f3dfe9

[gentoo-commits] proj/betagarden:master commit in: app-editors/texworks/, app-editors/texworks/files/, ...

2018-12-30 Thread Justin Lecher
commit: cbe64be02868bde376268aedc17670f16862df74
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Dec 30 11:33:42 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Dec 30 11:33:42 2018 +
URL:https://gitweb.gentoo.org/proj/betagarden.git/commit/?id=cbe64be0

Drop package using removed eclass

Signed-off-by: Justin Lecher  gentoo.org>

 app-editors/texworks/ChangeLog   |   7 ---
 app-editors/texworks/files/icon/texworks.png | Bin 2575 -> 0 bytes
 app-editors/texworks/files/texworks.desktop  |  21 
 app-editors/texworks/metadata.xml|   7 ---
 app-editors/texworks/texworks--r4.ebuild |  28 ---
 5 files changed, 63 deletions(-)

diff --git a/app-editors/texworks/ChangeLog b/app-editors/texworks/ChangeLog
deleted file mode 100644
index 505d4dc..000
--- a/app-editors/texworks/ChangeLog
+++ /dev/null
@@ -1,7 +0,0 @@
-# ChangeLog for app-editors/texworks
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-
-  12 Dec 2013; Justin Lecher  texworks--r4.ebuild,
-  metadata.xml:
-  Bump to EAPI=5 and fix qt dep; use eutils.eclass functions
-

diff --git a/app-editors/texworks/files/icon/texworks.png 
b/app-editors/texworks/files/icon/texworks.png
deleted file mode 100644
index 349b331..000
Binary files a/app-editors/texworks/files/icon/texworks.png and /dev/null differ

diff --git a/app-editors/texworks/files/texworks.desktop 
b/app-editors/texworks/files/texworks.desktop
deleted file mode 100644
index f516483..000
--- a/app-editors/texworks/files/texworks.desktop
+++ /dev/null
@@ -1,21 +0,0 @@
-[Desktop Entry]
-Encoding=UTF-8
-Version=1.0
-Name=TeXworks
-Name[zh_CN]=TeXworks
-Name[zh_HK]=TeXworks
-Name[zh_TW]=TeXworks
-GenericName=TeX Editor
-GenericName[zh_CN]=TeX编辑器
-GenericName[zh_HK]=TeX編輯器
-GenericName[zh_TW]=TeX編輯器
-Comment=Edit TeX documents
-Comment[zh_CN]=编辑TeX文档
-Comment[zh_HK]=編輯TeX文檔
-Comment[zh_TW]=編輯TeX文檔
-Exec=texworks
-Icon=texworks
-Terminal=false
-Type=Application
-MimeType=text/x-tex;
-Categories=Development;TextEditor;

diff --git a/app-editors/texworks/metadata.xml 
b/app-editors/texworks/metadata.xml
deleted file mode 100644
index 2c53357..000
--- a/app-editors/texworks/metadata.xml
+++ /dev/null
@@ -1,7 +0,0 @@
-
-http://www.gentoo.org/dtd/metadata.dtd";>
-
-  
-maintainer-wan...@gentoo.org
-  
-

diff --git a/app-editors/texworks/texworks--r4.ebuild 
b/app-editors/texworks/texworks--r4.ebuild
deleted file mode 100644
index f446e75..000
--- a/app-editors/texworks/texworks--r4.ebuild
+++ /dev/null
@@ -1,28 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit eutils qt4-r2 subversion
-
-DESCRIPTION="Environment for authoring TeX/LaTeX/ConTeXt with focus on 
usability"
-HOMEPAGE="http://code.google.com/p/texworks";
-SRC_URI=""
-ESVN_REPO_URI="http://texworks.googlecode.com/svn/trunk/";
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS=""
-IUSE=""
-
-DEPEND="
-   >=dev-qt/qtcore-4.5:4
-   app-text/poppler[qt4]
-   >=app-text/hunspell-1.2.2"
-RDEPEND="${DEPEND}"
-
-src_install() {
-   domenu "${FILESDIR}"/texworks.desktop
-   doicon "${FILESDIR}"/icon/texworks.png
-   dobin texworks
-}



[gentoo-commits] repo/gentoo:master commit in: sys-kernel/aufs-sources/

2018-11-18 Thread Justin Lecher
commit: 0d5029bd1bd805d882e6f6797d7ce460c0c73069
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Nov 18 13:55:26 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Nov 18 13:55:32 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0d5029bd

sys-kernel/aufs-sources: Bump to latest genpatches and linux release

Package-Manager: Portage-2.3.51, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-kernel/aufs-sources/Manifest   | 18 +
 .../aufs-sources/aufs-sources-4.14.80.ebuild   | 84 ++
 .../aufs-sources/aufs-sources-4.14.81.ebuild   | 84 ++
 .../aufs-sources/aufs-sources-4.18.18-r1.ebuild| 84 ++
 .../aufs-sources/aufs-sources-4.18.19.ebuild   | 84 ++
 sys-kernel/aufs-sources/aufs-sources-4.19.2.ebuild | 84 ++
 6 files changed, 438 insertions(+)

diff --git a/sys-kernel/aufs-sources/Manifest b/sys-kernel/aufs-sources/Manifest
index e264a599478..22363ae5a16 100644
--- a/sys-kernel/aufs-sources/Manifest
+++ b/sys-kernel/aufs-sources/Manifest
@@ -1,8 +1,11 @@
 DIST aufs-sources-4.14.56+_p20181008.tar.xz 184372 BLAKE2B 
145c9aea8918702ad8eb6a0a76e3a107f168c7136198ac01ffe1372adcfb14387558a71445f1f9e7dc9642ef3c58b78f5e2fccf29931cf7f190abd43156d0c54
 SHA512 
f39b202b3b7c2eab26fae58c034d901258a951d3c63dc864bd7f8c866da5767133eab61eb9c56fe2eeac0f0353cb1d965d5d190ac76cc1d334795891b8246e9c
+DIST aufs-sources-4.14.56+_p20181112.tar.xz 184600 BLAKE2B 
d3f95aab0be1077ba00f1a165640627a1500603537d38cb4f920eba27181c24dd63554cb0717074194efe1cd5bf4e0bd20f8c99f7f048c65088c94d6ae38a8d7
 SHA512 
97fa2447859918f5b49d54582ac7d7fe4171048f3a437d40ebc2dc39433949dae01a46e0975ad1eebbeb3fa687e2cd145892a6bd72bb63fda34f27d3597916b6
 DIST aufs-sources-4.14_p20180702.tar.xz 182024 BLAKE2B 
f57a26a6d28b3ca347e2aa96d1b54579c3f195b9020f26ca618f228e061d6d9d2c1d93269a2927753c407b83cae91602cc751a345c20f4f6c08a93928160a1f6
 SHA512 
423e31e290e92dae1cd57e2caabc31ccc2026a027bdaa363d37686b5c0087da5346785ebe0560d5a9cb6def0c019d41734e0ede84a6fe1472ab0581a9d6e3c27
 DIST aufs-sources-4.18.11+_p20181008.tar.xz 184324 BLAKE2B 
e75f1bcb4fd020e2307a82896880a6bec8892d8d145ab740e4b72dbed0d2152a4e9b732a017a44fc9a2de6159ca30bfb709108567048e0ed7f16352ed57609d2
 SHA512 
5c4f3fa430783263f52dcdf71bf1754b8b90c10044a8e3740d9f9bdd3afcf0845039ae6ea61598e2bb8a0766dc7140ab6787d3e923f5987a781954cc3a9b614c
+DIST aufs-sources-4.18.11+_p20181112.tar.xz 184644 BLAKE2B 
2ad62e6b4f8419f0ada04b2856cc82bdc823af8f38321a6ec318ae2b21f7c5deb024183631877d25a2a4712a1fbfee0f82dd4898cd093bae4121fbc854e609fb
 SHA512 
519e48b75580e431398d0d8d797bb8ebcc113390c284684340de646748a4d435ff890dc1653831c88a1373c899caa1f5132a96b3912c0383e261d7c3fa948ea7
 DIST aufs-sources-4.18_p20181008.tar.xz 184396 BLAKE2B 
fb5939732a21a981be75fa337bb1311a3d14d7973dc6fa6ad021997c5f9a7bbf94cdb65865fd276b61c2b8d90bf1e0795cb4073914c0877946705663aca64c5d
 SHA512 
f838272b2673088458f8993c101cd6f89611f217224afc273abdfcac855f2ecebc51460895bf2d19748751ae931f3dfe9db5cc2d3f43a80b4776137cae78da5c
 DIST aufs-sources-4.19_p20181029.tar.xz 184104 BLAKE2B 
fb2016c3066bdfc91b7ecea302a3d699b62d8e5c8ce44e2c8b8f2cb6e603a862d6cd53caea97c788821abc3e944edfd989eee39849c35022418235c14a785568
 SHA512 
168b24c73743509dd355f50389e0196cc377273daa035919696264604d80cfae46402599ae5968b56e652513626373fe5fd6bc675e98ec9fff414b7c6aa90cac
+DIST aufs-sources-4.19_p20181112.tar.xz 184332 BLAKE2B 
0c6c9b434b36b7731efddd25bd15fb631e1ee5498e7d1980b7d917e627c69f8c2919e23a6e61fadb5c6ac6efcf7f0e5968ab3b610264fc0cc1ddeae60037bce1
 SHA512 
cfb0dff3392517da795bed518ffc0e96145b117698ddf9aba0432043d988fa3ed69b6f26bc6c9e870eb6739dcba0c3d78535696256329075d17318f751f77d78
 DIST genpatches-4.14-57.base.tar.xz 1472016 BLAKE2B 
1905e983d34220a97bda5eb7b1fff09d7ac42dc129b722611c079418133231d6d41f871c20df94a3db5440c8b1374d09ae3303be9e2cb8b70f5d92b61382f3ed
 SHA512 
bace21a042f6e45512a8ffe3cb329c70b3f3548142fbaddbd76b2be50f50276db8f4cc410a7d05915c30c443cc82934893203d3025cd4653387ff6fd64f0b4ae
 DIST genpatches-4.14-57.experimental.tar.xz 5216 BLAKE2B 
ac751059eb363f1327b8cc6a9ad6c993cc56e3a57010f6a7d8b30220a401ec2b607b7eda601b39f1d6480fddb45f7a980ba7ffe7cf808ae382a57cc57a785f39
 SHA512 
efb2bf34ea83789437388b6becb4c51564c885355dffdfe0f902ded0cd0a9dbc534a891a8eddde76418a651f0da41d8a7402e672688b2cccaae5897ce0bfb744
 DIST genpatches-4.14-57.extras.tar.xz 17488 BLAKE2B 
6dbe6859eafa2a61d2139572a28046a1278a965aa6a82518b5658c61f18ece4054175116b5907436bc40bd4c32458752fc381cb29806d9e25550a17f81684eab
 SHA512 
49d7a27075e7e113ef39f2da651e9302b51c66d46c4d2960acc648dcd0eb4b608118584dbcbf169d73cf1ed4e105fbae9125f06dda46d346a63f0f35bf23bb4e
@@ -36,6 +39,12 @@ DIST genpatches-4.14-85.extras.tar.xz 17492 BLAKE2B 
220ed00e4813e2b94bc1815e5cdc
 DIST genpatches-4.14-86.base.tar.xz 207954

[gentoo-commits] proj/betagarden:master commit in: dev-util/vng/, dev-util/entomologist/

2018-11-18 Thread Justin Lecher
commit: ecbad4dbdc3b6029dadc7c9e5c6c9c6b7e6c3d5b
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Nov 18 13:40:29 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Nov 18 13:40:29 2018 +
URL:https://gitweb.gentoo.org/proj/betagarden.git/commit/?id=ecbad4db

Drop ebuilds depending on removed eclass

Signed-off-by: Justin Lecher  gentoo.org>

 dev-util/entomologist/ChangeLog |  9 
 dev-util/entomologist/entomologist-0.5.2.ebuild | 27 --
 dev-util/entomologist/entomologist-1.1.ebuild   | 29 
 dev-util/entomologist/metadata.xml  | 10 -
 dev-util/vng/ChangeLog  | 14 
 dev-util/vng/metadata.xml   |  7 --
 dev-util/vng/vng-20081021.ebuild| 30 -
 7 files changed, 126 deletions(-)

diff --git a/dev-util/entomologist/ChangeLog b/dev-util/entomologist/ChangeLog
deleted file mode 100644
index f443144..000
--- a/dev-util/entomologist/ChangeLog
+++ /dev/null
@@ -1,9 +0,0 @@
-# ChangeLog for dev-util/entomologist
-# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-
-  08 Jun 2015; Justin Lecher  metadata.xml:
-  dev-util/entomologist: Updating remote-id in metadata.xml
-
-  13 Oct 2013; Justin Lecher  entomologist-0.5.2.ebuild,
-  entomologist-1.1.ebuild, metadata.xml:
-  QA fixes

diff --git a/dev-util/entomologist/entomologist-0.5.2.ebuild 
b/dev-util/entomologist/entomologist-0.5.2.ebuild
deleted file mode 100644
index 5119c13..000
--- a/dev-util/entomologist/entomologist-0.5.2.ebuild
+++ /dev/null
@@ -1,27 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI="2"
-
-inherit qt4-r2
-
-DESCRIPTION="Bug tracking for the desktop"
-HOMEPAGE="http://entomologist.sourceforge.net/";
-SRC_URI="mirror://sourceforge/project/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2 LGPL-2
-   || ( FDL-1.2 CC-BY-SA-3.0 )
-   CC-BY-3.0"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND="
-   >=dev-qt/qtcore-4.7:4
-   >=dev-qt/qtgui-4.7:4
-   >=dev-qt/qtsql-4.7:4"
-RDEPEND="${DEPEND}"
-
-# TODO: Unbundle
-# - libmaia - https://github.com/wiedi/libmaia
-# - qtsoap - 
http://qt.gitorious.org/qt-solutions/qt-solutions/trees/master/qtsoap

diff --git a/dev-util/entomologist/entomologist-1.1.ebuild 
b/dev-util/entomologist/entomologist-1.1.ebuild
deleted file mode 100644
index 05ddd85..000
--- a/dev-util/entomologist/entomologist-1.1.ebuild
+++ /dev/null
@@ -1,29 +0,0 @@
-# Copyright 1999-2013 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI="2"
-
-inherit qt4-r2
-
-DESCRIPTION="Bug tracking for the desktop"
-HOMEPAGE="http://entomologist.sourceforge.net/";
-SRC_URI="mirror://sourceforge/project/${PN}/${P}.tar.gz"
-
-LICENSE="GPL-2 LGPL-2
-   || ( FDL-1.2 CC-BY-SA-3.0 )
-   CC-BY-3.0"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND="
-   >=dev-qt/qtcore-4.7:4
-   >=dev-qt/qtgui-4.7:4
-   >=dev-qt/qtsql-4.7:4[sqlite]"
-RDEPEND="${DEPEND}"
-
-# TODO: Unbundle
-# - qjson - dev-libs/qjson
-# - libmaia - https://github.com/wiedi/libmaia
-# - qtsoap - 
http://qt.gitorious.org/qt-solutions/qt-solutions/trees/master/qtsoap
-# - qtsingeapplication - 
https://qt.gitorious.org/qt-solutions/qt-solutions/trees/master/qtsingleapplication

diff --git a/dev-util/entomologist/metadata.xml 
b/dev-util/entomologist/metadata.xml
deleted file mode 100644
index 218a163..000
--- a/dev-util/entomologist/metadata.xml
+++ /dev/null
@@ -1,10 +0,0 @@
-
-http://www.gentoo.org/dtd/metadata.dtd";>
-
-  
-maintainer-wan...@gentoo.org
-  
-  
-entomologist
-  
-

diff --git a/dev-util/vng/ChangeLog b/dev-util/vng/ChangeLog
deleted file mode 100644
index 585b02f..000
--- a/dev-util/vng/ChangeLog
+++ /dev/null
@@ -1,14 +0,0 @@
-# ChangeLog for dev-util/vng
-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
-
-  13 Oct 2013; Justin Lecher  vng-20081021.ebuild:
-  QA fixes
-
-  19 Dec 2012; Justin Lecher  vng-20081021.ebuild,
-  +metadata.xml:
-  Use qt4-r2.eclass
-
-  19 Dec 2012; Justin Lecher  vng-20081021.ebuild,
-  +metadata.xml:
-  Use qt4-r2.eclass
-

diff --git a/dev-util/vng/metadata.xml b/dev-util/vng/metadata.xml
deleted file mode 100644
index 2c53357..000
--- a/dev-util/vng/metadata.xml
+++ /dev/null
@@ -1,7 +0,0 @@
-
-http://www.gentoo.org/dtd/metadata.dtd";>
-
-  
-maintainer-wan...@gentoo.org
-  
-

diff --git a/dev-util/vng/vng-20081021.ebuild b/dev-util/vng/vng-20081021.ebuild
deleted file mode 100644
index fd77a63..000
--- a/dev-util/vng/vng-20081021.ebuild
+++ /dev/null

[gentoo-commits] repo/gentoo:master commit in: sys-block/fio/

2018-11-18 Thread Justin Lecher
commit: a257dba8d22cc450b5f1535f19bf733088f8b546
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Nov 18 11:10:04 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Nov 18 11:20:35 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a257dba8

sys-block/fio: Fix shebang before replicating script

Closes: https://bugs.gentoo.org/659556
Package-Manager: Portage-2.3.51, Repoman-2.3.12
Signed-off-by: Justin Lecher  gentoo.org>

 sys-block/fio/fio-3.7.ebuild | 6 +-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/sys-block/fio/fio-3.7.ebuild b/sys-block/fio/fio-3.7.ebuild
index dd2a2649eca..b1d447a9098 100644
--- a/sys-block/fio/fio-3.7.ebuild
+++ b/sys-block/fio/fio-3.7.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -87,6 +87,10 @@ src_install() {
emake install DESTDIR="${D}" prefix="${EPREFIX}/usr" 
mandir="${EPREFIX}/usr/share/man"
 
if use gnuplot ; then
+   sed -i 's:python2.7:python:g' \
+   "${ED}/usr/bin/fio2gnuplot" \
+   "${ED}/usr/bin/fiologparser_hist.py" \
+   "${ED}/usr/bin/fiologparser.py"
python_replicate_script \
"${ED}/usr/bin/fio2gnuplot" \
"${ED}/usr/bin/fiologparser_hist.py" \



[gentoo-commits] repo/gentoo:master commit in: dev-python/statsmodels/

2018-11-11 Thread Justin Lecher
commit: 50eabff14a251b2ddcabe9dd497f388b19d49664
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Nov 11 14:07:18 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Nov 11 14:07:47 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=50eabff1

dev-python/statsmodels: add missing eclass

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 dev-python/statsmodels/metadata.xml | 2 +-
 dev-python/statsmodels/statsmodels-0.6.1.ebuild | 4 ++--
 dev-python/statsmodels/statsmodels-0.8.0.ebuild | 4 ++--
 dev-python/statsmodels/statsmodels-0.9.0.ebuild | 4 ++--
 dev-python/statsmodels/statsmodels-.ebuild  | 4 ++--
 5 files changed, 9 insertions(+), 9 deletions(-)

diff --git a/dev-python/statsmodels/metadata.xml 
b/dev-python/statsmodels/metadata.xml
index 72014447a73..0a394bee4cf 100644
--- a/dev-python/statsmodels/metadata.xml
+++ b/dev-python/statsmodels/metadata.xml
@@ -1,4 +1,4 @@
-
+
 http://www.gentoo.org/dtd/metadata.dtd";>
 
   

diff --git a/dev-python/statsmodels/statsmodels-0.6.1.ebuild 
b/dev-python/statsmodels/statsmodels-0.6.1.ebuild
index a7e42001058..e67e1d03625 100644
--- a/dev-python/statsmodels/statsmodels-0.6.1.ebuild
+++ b/dev-python/statsmodels/statsmodels-0.6.1.ebuild
@@ -1,11 +1,11 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=5
 
 PYTHON_COMPAT=( python2_7 python3_{4,5,6} )
 
-inherit distutils-r1 virtualx
+inherit distutils-r1 eutils virtualx
 
 DESCRIPTION="Statistical computations and models for use with SciPy"
 HOMEPAGE="https://www.statsmodels.org/stable/index.html";

diff --git a/dev-python/statsmodels/statsmodels-0.8.0.ebuild 
b/dev-python/statsmodels/statsmodels-0.8.0.ebuild
index 3aedbad099a..c8250754f8e 100644
--- a/dev-python/statsmodels/statsmodels-0.8.0.ebuild
+++ b/dev-python/statsmodels/statsmodels-0.8.0.ebuild
@@ -1,11 +1,11 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
 
 PYTHON_COMPAT=( python2_7 python3_{4,5,6} )
 
-inherit distutils-r1 virtualx
+inherit distutils-r1 eutils virtualx
 
 DESCRIPTION="Statistical computations and models for use with SciPy"
 HOMEPAGE="https://www.statsmodels.org/stable/index.html";

diff --git a/dev-python/statsmodels/statsmodels-0.9.0.ebuild 
b/dev-python/statsmodels/statsmodels-0.9.0.ebuild
index 95b3326d4d7..c07a8261021 100644
--- a/dev-python/statsmodels/statsmodels-0.9.0.ebuild
+++ b/dev-python/statsmodels/statsmodels-0.9.0.ebuild
@@ -1,11 +1,11 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
 
 PYTHON_COMPAT=( python2_7 python3_{5,6} )
 
-inherit distutils-r1
+inherit distutils-r1 eutils
 
 DESCRIPTION="Statistical computations and models for use with SciPy"
 HOMEPAGE="https://www.statsmodels.org/stable/index.html";

diff --git a/dev-python/statsmodels/statsmodels-.ebuild 
b/dev-python/statsmodels/statsmodels-.ebuild
index 51855998071..888c2bcd17e 100644
--- a/dev-python/statsmodels/statsmodels-.ebuild
+++ b/dev-python/statsmodels/statsmodels-.ebuild
@@ -1,11 +1,11 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
 
 PYTHON_COMPAT=( python2_7 python3_{5,6} )
 
-inherit distutils-r1 git-r3 virtualx
+inherit distutils-r1 eutils git-r3 virtualx
 
 DESCRIPTION="Statistical computations and models for use with SciPy"
 HOMEPAGE="https://www.statsmodels.org/stable/index.html";



[gentoo-commits] repo/gentoo:master commit in: dev-python/pipenv/

2018-11-10 Thread Justin Lecher
commit: 0db0e9e33213ca31679465c0a5237178b96891f4
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Nov 10 14:23:56 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Nov 10 14:25:25 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0db0e9e3

dev-python/pipenv: Add python3.7 support

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 dev-python/pipenv/pipenv-9.0.0-r2.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/dev-python/pipenv/pipenv-9.0.0-r2.ebuild 
b/dev-python/pipenv/pipenv-9.0.0-r2.ebuild
index 73a98b4733a..051af5a9f0c 100644
--- a/dev-python/pipenv/pipenv-9.0.0-r2.ebuild
+++ b/dev-python/pipenv/pipenv-9.0.0-r2.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
 
-PYTHON_COMPAT=( python{2_7,3_{4,5,6}} )
+PYTHON_COMPAT=( python{2_7,3_{4,5,6,7}} )
 
 inherit distutils-r1
 



[gentoo-commits] repo/gentoo:master commit in: dev-python/mccabe/

2018-11-10 Thread Justin Lecher
commit: ca0a6562e739ea6748fb40a30d7d8efd4454a36c
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Nov 10 13:29:53 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Nov 10 14:25:24 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ca0a6562

dev-python/mccabe: Add python3.7 support

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 dev-python/mccabe/mccabe-0.6.1.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/dev-python/mccabe/mccabe-0.6.1.ebuild 
b/dev-python/mccabe/mccabe-0.6.1.ebuild
index 5d0d2f7ff24..b49e728c2ba 100644
--- a/dev-python/mccabe/mccabe-0.6.1.ebuild
+++ b/dev-python/mccabe/mccabe-0.6.1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
 
-PYTHON_COMPAT=( python2_7 python3_{4,5,6} pypy{,3} )
+PYTHON_COMPAT=( python2_7 python3_{4,5,6,7} pypy{,3} )
 
 inherit distutils-r1
 



[gentoo-commits] repo/gentoo:master commit in: dev-python/resumable-urlretrieve/

2018-11-10 Thread Justin Lecher
commit: d02199948e7390daaa3d2e709ceac4dc84e495b1
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Nov 10 13:51:26 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Nov 10 14:25:24 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d0219994

dev-python/resumable-urlretrieve: Add python3.7 support

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 dev-python/resumable-urlretrieve/resumable-urlretrieve-0.1.5.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git 
a/dev-python/resumable-urlretrieve/resumable-urlretrieve-0.1.5.ebuild 
b/dev-python/resumable-urlretrieve/resumable-urlretrieve-0.1.5.ebuild
index 617f40f04bb..e215050553f 100644
--- a/dev-python/resumable-urlretrieve/resumable-urlretrieve-0.1.5.ebuild
+++ b/dev-python/resumable-urlretrieve/resumable-urlretrieve-0.1.5.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
 
-PYTHON_COMPAT=( python3_{4,5,6} )
+PYTHON_COMPAT=( python3_{4,5,6,7} )
 
 inherit distutils-r1
 



[gentoo-commits] repo/gentoo:master commit in: dev-python/pew/

2018-11-10 Thread Justin Lecher
commit: 44bb321f4d62575d8f2585a42c39d143886bd0d3
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Nov 10 14:23:32 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Nov 10 14:25:25 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=44bb321f

dev-python/pew: Add python3.7 support

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 dev-python/pew/pew-1.1.1.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/dev-python/pew/pew-1.1.1.ebuild b/dev-python/pew/pew-1.1.1.ebuild
index 5c0c4ea5583..b1256f212e9 100644
--- a/dev-python/pew/pew-1.1.1.ebuild
+++ b/dev-python/pew/pew-1.1.1.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
 
-PYTHON_COMPAT=( python{2_7,3_{4,5,6}} )
+PYTHON_COMPAT=( python{2_7,3_{4,5,6,7}} )
 
 inherit distutils-r1
 



[gentoo-commits] repo/gentoo:master commit in: dev-python/pythonz-bd/

2018-11-10 Thread Justin Lecher
commit: 54cf85a904f1d3690981dea839e806e899908c7a
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Nov 10 14:01:30 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Nov 10 14:25:24 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=54cf85a9

dev-python/pythonz-bd: Add python3.7 support

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 dev-python/pythonz-bd/pythonz-bd-1.11.4.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/dev-python/pythonz-bd/pythonz-bd-1.11.4.ebuild 
b/dev-python/pythonz-bd/pythonz-bd-1.11.4.ebuild
index 8927d11a101..10f54bba996 100644
--- a/dev-python/pythonz-bd/pythonz-bd-1.11.4.ebuild
+++ b/dev-python/pythonz-bd/pythonz-bd-1.11.4.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
 
-PYTHON_COMPAT=( python{2_7,3_{4,5,6}} pypy pypy3 )
+PYTHON_COMPAT=( python{2_7,3_{4,5,6,7}} pypy pypy3 )
 
 inherit distutils-r1
 



[gentoo-commits] repo/gentoo:master commit in: dev-python/shutilwhich/

2018-11-10 Thread Justin Lecher
commit: dde854c9c53d37e888ca6981780e4b453fddcfd1
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Nov 10 14:08:49 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Nov 10 14:25:25 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=dde854c9

dev-python/shutilwhich: Add python3.7 support

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 dev-python/shutilwhich/shutilwhich-1.1.0.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/dev-python/shutilwhich/shutilwhich-1.1.0.ebuild 
b/dev-python/shutilwhich/shutilwhich-1.1.0.ebuild
index 96649b834e1..cfab56be9c8 100644
--- a/dev-python/shutilwhich/shutilwhich-1.1.0.ebuild
+++ b/dev-python/shutilwhich/shutilwhich-1.1.0.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
 
-PYTHON_COMPAT=( python2_7 python3_{4,5,6} )
+PYTHON_COMPAT=( python2_7 python3_{4,5,6,7} )
 
 inherit distutils-r1
 



[gentoo-commits] repo/gentoo:master commit in: dev-python/flake8/

2018-11-10 Thread Justin Lecher
commit: 6305026604f13802c25890488ae2b822ae2e095d
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Nov 10 13:35:08 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Nov 10 14:25:24 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=63050266

dev-python/flake8: Add python3.7 support

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 dev-python/flake8/flake8-3.6.0.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/dev-python/flake8/flake8-3.6.0.ebuild 
b/dev-python/flake8/flake8-3.6.0.ebuild
index 5e7f69a1d64..7cda3bb3473 100644
--- a/dev-python/flake8/flake8-3.6.0.ebuild
+++ b/dev-python/flake8/flake8-3.6.0.ebuild
@@ -3,7 +3,7 @@
 
 EAPI=6
 
-PYTHON_COMPAT=( python2_7 python3_{4,5,6} pypy{,3} )
+PYTHON_COMPAT=( python2_7 python3_{4,5,6,7} pypy{,3} )
 
 inherit distutils-r1
 



[gentoo-commits] repo/gentoo:master commit in: dev-python/virtualenv-clone/

2018-11-10 Thread Justin Lecher
commit: d13d4981751f1a50f25ad844df348f3fd173f370
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Nov 10 14:15:15 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Nov 10 14:25:25 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d13d4981

dev-python/virtualenv-clone: Add python3.7 support

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 dev-python/virtualenv-clone/virtualenv-clone-0.2.6.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/dev-python/virtualenv-clone/virtualenv-clone-0.2.6.ebuild 
b/dev-python/virtualenv-clone/virtualenv-clone-0.2.6.ebuild
index 21e8667c3e4..0fff093ae30 100644
--- a/dev-python/virtualenv-clone/virtualenv-clone-0.2.6.ebuild
+++ b/dev-python/virtualenv-clone/virtualenv-clone-0.2.6.ebuild
@@ -1,9 +1,9 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
 
-PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} )
+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6,3_7} )
 
 inherit distutils-r1
 



[gentoo-commits] repo/gentoo:master commit in: sys-auth/munge/, sys-auth/munge/files/

2018-11-10 Thread Justin Lecher
commit: 00465fcf6c74c73407d7247a915354fd7c0d8cf6
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Nov 10 12:04:54 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Nov 10 13:25:36 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=00465fcf

sys-auth/munge: Fix munge.key permission problems

Closes: https://bugs.gentoo.org/624962
Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 sys-auth/munge/files/munged.initd |  4 +-
 sys-auth/munge/munge-0.5.13-r1.ebuild | 69 +++
 2 files changed, 71 insertions(+), 2 deletions(-)

diff --git a/sys-auth/munge/files/munged.initd 
b/sys-auth/munge/files/munged.initd
index e028d4ffd16..6bb0a1097f2 100644
--- a/sys-auth/munge/files/munged.initd
+++ b/sys-auth/munge/files/munged.initd
@@ -1,5 +1,5 @@
 #!/sbin/openrc-run
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 depend() {
@@ -25,7 +25,7 @@ start() {
checkpath -d -m 755 -o munge:munge /var/run/munge
checkpath -d -m 711 -o munge:munge /var/lib/munge
checkpath -d -m 700 -o munge:munge /var/log/munge
-   checkpath -f -m 640 -o root:munge "${KEYFILE}"
+   checkpath -f -m 600 -o munge:munge "${KEYFILE}"
start-stop-daemon -S /usr/sbin/munged \
--user munge \
--group munge \

diff --git a/sys-auth/munge/munge-0.5.13-r1.ebuild 
b/sys-auth/munge/munge-0.5.13-r1.ebuild
new file mode 100644
index 000..b84cd36bf18
--- /dev/null
+++ b/sys-auth/munge/munge-0.5.13-r1.ebuild
@@ -0,0 +1,69 @@
+# Copyright 1999-2018 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+inherit autotools user prefix
+
+DESCRIPTION="An authentication service for creating and validating credentials"
+HOMEPAGE="https://github.com/dun/munge";
+SRC_URI="https://github.com/dun/munge/releases/download/munge-${PV}/munge-${PV}.tar.xz";
+
+LICENSE="GPL-3"
+SLOT="0"
+KEYWORDS="~alpha ~amd64 ~hppa ~ia64 ~mips ~ppc ~ppc64 ~sparc ~x86"
+IUSE="debug gcrypt static-libs"
+
+DEPEND="
+   app-arch/bzip2
+   sys-libs/zlib
+   gcrypt? ( dev-libs/libgcrypt:0 )
+   !gcrypt? ( dev-libs/openssl:0 )"
+RDEPEND="${DEPEND}"
+
+pkg_setup() {
+   enewgroup munge
+   enewuser munge -1 -1 /var/lib/munge munge
+}
+
+src_prepare() {
+   default
+
+   hprefixify config/x_ac_path_openssl.m4
+
+   eautoreconf
+}
+
+src_configure() {
+   econf \
+   --localstatedir="${EPREFIX}"/var \
+   --with-crypto-lib=$(usex gcrypt libgcrypt openssl) \
+   $(use_enable debug) \
+   $(use_enable static-libs static)
+}
+
+src_install() {
+   local d
+
+   default
+
+   # 450830
+   if [ -d "${ED}"/var/run ]; then
+   rm -rf "${ED}"/var/run || die
+   fi
+
+   dodir /etc/munge
+
+   for d in "init.d" "default" "sysconfig"; do
+   if [ -d "${ED}"/etc/${d} ]; then
+   rm -r "${ED}"/etc/${d} || die
+   fi
+   done
+
+   newconfd "$(prefixify_ro "${FILESDIR}"/${PN}d.confd)" ${PN}d
+   newinitd "$(prefixify_ro "${FILESDIR}"/${PN}d.initd)" ${PN}d
+
+   if ! use static-libs; then
+   find "${D}" -name '*.la' -delete || die
+   fi
+}



[gentoo-commits] repo/gentoo:master commit in: sys-cluster/slurm/files/, sys-cluster/slurm/

2018-11-10 Thread Justin Lecher
commit: 9aa4f6dd9345daba4b121c66b31548c67bcac400
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Nov 10 13:25:08 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Nov 10 13:25:37 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=9aa4f6dd

sys-cluster/slurm: Fix init stuff

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 sys-cluster/slurm/files/slurmctld.initd| 26 +
 sys-cluster/slurm/files/slurmd.initd   | 22 --
 sys-cluster/slurm/files/slurmdbd.initd | 22 --
 ...lurm-18.08.3.ebuild => slurm-18.08.3-r1.ebuild} | 27 ++
 4 files changed, 59 insertions(+), 38 deletions(-)

diff --git a/sys-cluster/slurm/files/slurmctld.initd 
b/sys-cluster/slurm/files/slurmctld.initd
index e87dfdb83ad..5cb5888fa15 100644
--- a/sys-cluster/slurm/files/slurmctld.initd
+++ b/sys-cluster/slurm/files/slurmctld.initd
@@ -1,5 +1,5 @@
 #!/sbin/openrc-run
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 extra_commands="reload"
@@ -25,7 +25,7 @@ create_folder_and_set_permission() {
 eerror "SLURM: folder == ${folder} == /var/tmp"
 exit
 fi
-checkpath -d -o slurm:slurm ${folder}
+checkpath -d -o slurm:slurm "${folder}"
 }
 
 checkconfig() {
@@ -35,12 +35,20 @@ checkconfig() {
eerror "in slurm doc directory"
return 1
fi
-   
+
# Make sure folders exists
. /etc/slurm/slurm.conf
-   folders=(${SlurmdSpoolDir} `dirname ${SlurmctldLogFile}` `dirname 
${SlurmctldPidFile}` `dirname ${SlurmdLogFile}` `dirname ${SlurmdPidFile}` 
${SlurmdSpoolDir} ${StateSaveLocation})
-   for folder in ${folders[*]}; do
-   create_folder_and_set_permission ${folder}
+   folders=(
+   ${SlurmdSpoolDir}
+   $(dirname ${SlurmctldLogFile})
+   $(dirname ${SlurmctldPidFile})
+   $(dirname ${SlurmdLogFile})
+   $(dirname ${SlurmdPidFile})
+   ${SlurmdSpoolDir}
+   ${StateSaveLocation}
+   )
+   for folder in ${folders[@]}; do
+   create_folder_and_set_permission "${folder}"
done
 }
 
@@ -48,7 +56,7 @@ start() {
ebegin "Starting slurm control daemon"
checkconfig
start-stop-daemon --start --quiet --background \
-   --pidfile /var/run/slurm/slurmctld.pid \
+   --pidfile /run/slurm/slurmctld.pid \
--user slurm \
--group slurm \
--exec /usr/sbin/slurmctld -- ${SLURMCTLD_OPTS}
@@ -57,12 +65,12 @@ start() {
 
 stop() {
ebegin "Stopping slurm control daemon"
-   start-stop-daemon --stop --pidfile /var/run/slurm/slurmctld.pid
+   start-stop-daemon --stop --pidfile /run/slurm/slurmctld.pid
eend $?
 }
 
 reload() {
ebegin "Reloading slurm daemon configuration"
-   start-stop-daemon --signal HUP --pidfile /var/run/slurm/slurmctld.pid
+   start-stop-daemon --signal HUP --pidfile /run/slurm/slurmctld.pid
eend $?
 }

diff --git a/sys-cluster/slurm/files/slurmd.initd 
b/sys-cluster/slurm/files/slurmd.initd
index a4a165be87d..dd9797c0c7d 100644
--- a/sys-cluster/slurm/files/slurmd.initd
+++ b/sys-cluster/slurm/files/slurmd.initd
@@ -1,5 +1,5 @@
 #!/sbin/openrc-run
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 extra_commands="reload"
@@ -37,9 +37,17 @@ checkconfig() {
fi
# Make sure folders exists
. /etc/slurm/slurm.conf
-   folders=(${SlurmdSpoolDir} `dirname ${SlurmctldLogFile}` `dirname 
${SlurmctldPidFile}` `dirname ${SlurmdLogFile}` `dirname ${SlurmdPidFile}` 
${SlurmdSpoolDir} ${StateSaveLocation})
-   for folder in ${folders[*]}; do
-   create_folder_and_set_permission ${folder}
+   folders=(
+   ${SlurmdSpoolDir}
+   $(dirname ${SlurmctldLogFile})
+   $(dirname ${SlurmctldPidFile})
+   $(dirname ${SlurmdLogFile})
+   $(dirname ${SlurmdPidFile})
+   ${SlurmdSpoolDir}
+   ${StateSaveLocation}
+   )
+   for folder in ${folders[@]}; do
+   create_folder_and_set_permission "${folder}"
done
 }
 
@@ -51,7 +59,7 @@ start() {
# and https://computing.llnl.gov/linux/slurm/faq.html#rlimit
ulimit -l unlimited
start-stop-daemon --start --quiet --background \
-   --pidfile /var/run/slurm/slurmd.pid \
+   --pidfile /run/slurm/slurmd.pid \
--user root \
--group root \

[gentoo-commits] repo/gentoo:master commit in: sys-auth/munge/files/

2018-11-10 Thread Justin Lecher
commit: e96fb723bfab0c360e657b8d8bdca326cc9fa356
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Nov 10 13:02:43 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Nov 10 13:25:37 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e96fb723

sys-auth/munge: Update init

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 sys-auth/munge/files/munged.initd | 7 ---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/sys-auth/munge/files/munged.initd 
b/sys-auth/munge/files/munged.initd
index 6bb0a1097f2..0cbbe7213a9 100644
--- a/sys-auth/munge/files/munged.initd
+++ b/sys-auth/munge/files/munged.initd
@@ -22,15 +22,16 @@ start() {
eerror "Failed to create munge key"
eend 1 && exit 1
fi
-   checkpath -d -m 755 -o munge:munge /var/run/munge
+   checkpath -d -m 755 -o munge:munge /run/munge
checkpath -d -m 711 -o munge:munge /var/lib/munge
checkpath -d -m 700 -o munge:munge /var/log/munge
checkpath -f -m 600 -o munge:munge "${KEYFILE}"
start-stop-daemon -S /usr/sbin/munged \
--user munge \
--group munge \
-   --pidfile /var/run/munge/munged.pid \
+   --pidfile /run/munge/munged.pid \
-- \
+   --log-file=/var/log/munge/munged.log \
--key-file="${KEYFILE}" \
--group-check-mtime="${GROUP_CHECK_MTIME}" \
--group-update-time="${GROUP_UPDATE_TIME}" \
@@ -41,7 +42,7 @@ start() {
 stop() {
ebegin "Stopping munged"
start-stop-daemon -K /usr/sbin/munged \
-   --pidfile /var/run/munge/munged.pid
+   --pidfile /run/munge/munged.pid
eend ${?}
 }
 



[gentoo-commits] repo/gentoo:master commit in: sys-kernel/aufs-sources/

2018-11-10 Thread Justin Lecher
commit: 2956d61da925db5fb0a65d2a53f670ed72d4689c
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Nov 10 11:44:55 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Nov 10 11:45:06 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=2956d61d

sys-kernel/aufs-sources: Bump to latest genpatches and linux release

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 sys-kernel/aufs-sources/Manifest   |  9 +++
 .../aufs-sources/aufs-sources-4.14.79.ebuild   | 84 ++
 .../aufs-sources/aufs-sources-4.18.17.ebuild   | 84 ++
 sys-kernel/aufs-sources/aufs-sources-4.19.1.ebuild | 84 ++
 4 files changed, 261 insertions(+)

diff --git a/sys-kernel/aufs-sources/Manifest b/sys-kernel/aufs-sources/Manifest
index caa6ff5fba4..e264a599478 100644
--- a/sys-kernel/aufs-sources/Manifest
+++ b/sys-kernel/aufs-sources/Manifest
@@ -33,6 +33,9 @@ DIST genpatches-4.14-84.extras.tar.xz 17484 BLAKE2B 
a85d48a013393e6bb775c93138d4
 DIST genpatches-4.14-85.base.tar.xz 2050508 BLAKE2B 
3d4b9917b538d6f906f8112cce00d06e07d09783fce9478ce7f166c900707d56cc147d30ffe4dcc6f26c1975881aa2771dfb76dd21d3580dc47430c035d6d850
 SHA512 
23b1b30c43e78ebe57c7dc06fb6a6aea035b1160d421c6577eaeb5afe0eb8c72390eb5b33e708990f3c0452fad4678946a74279f3e9ba547ebd385f59bfc6ead
 DIST genpatches-4.14-85.experimental.tar.xz 5224 BLAKE2B 
dcedc912566883c0c57934acc23a8c5d89c95d14bc3e6f52b715562a414a535896774f5e184c1c83f1d601c32231ab3b98579eac848fd6a71ee7f833a044088a
 SHA512 
6beeb2a40e8f668f833da082d79fa33a3901891a7f062fca56f4f6182fe6d6368466ed9eef4ad1daddc62b383ec5aeb8189b09577b33fd39be9b53e1e53c920a
 DIST genpatches-4.14-85.extras.tar.xz 17492 BLAKE2B 
220ed00e4813e2b94bc1815e5cdca40409239864b1447bc7eb261a37a6b132b92935f0cf1a01749d4d2b2522c7e932c2e5fd3eb127fb0d09b7b3615dcb8d531c
 SHA512 
fa0cf06245bb72a36bece9cd98daa55ae49b82e08ad5bdd3474ac6fd875f43278eaaf85e64620c120856700222e4f8b61102cb0349566be3a2f39e561140bd43
+DIST genpatches-4.14-86.base.tar.xz 2079548 BLAKE2B 
222359dcf32e823bca80c453bf3cb1f15b7ae99fbc57e5fd58e26b847c9e2e1c12bd0ac842f0867c0b408c220c015fb0d9b0cb48eecc240097977492b86aa092
 SHA512 
748b21c90c6f9954886c383fb9143ae149bfbe17d311f072f4b4f48bd352d946fd28adffe348f268a7a7c7315a36b7ba560a362d627b282509a3920f7b40032b
+DIST genpatches-4.14-86.experimental.tar.xz 5220 BLAKE2B 
68fb137e87a7be41c9ac64fee33b9fa58510085e7e32784a49728f2f12ab4de134b801b6772571bcdb16f6f1d481b93968a574c1c60b6070c31938982bc5eddb
 SHA512 
e1e7fdc44a02b9f9412430b3430f843239ac1801ee797c1ea55ece4477087b53fb1379342f3e4ef24bbebc59df7e38bc802cdb222db6df0f2d3f1cc04fe163ad
+DIST genpatches-4.14-86.extras.tar.xz 17496 BLAKE2B 
02fcd8d7df697b97635dec9dafc6e4ea48f5b86cb17ffd084417bbca4837fe76751f2b766e4c02440a9aa30776c04c527d1eb95e85256c0a9e64bcc05e74167d
 SHA512 
b01ba58775ba5583624faebbe05f98eb7e8f9db6cee09422c4825a7156f5318980a9fb2c32dc5d6648ccf57912993b699a267c9a1eaeb501de05b9e7f65c9fd5
 DIST genpatches-4.18-12.base.tar.xz 237564 BLAKE2B 
221499b05746862c8d7261959b63791efc1450329ec50b14d487306fa97398c364ee553922bdfb7b4dbf688792fcb778e6a30a57a6df10099f5367f01f1869db
 SHA512 
08efe1e89151e1c7c2e19ca48380fa797297879d83b7a51ea3278a966a39324a2a1e5f66f2e46a64ed88d24c243576b119967d3bbccfdb78c7388525bbdb9472
 DIST genpatches-4.18-12.experimental.tar.xz 5224 BLAKE2B 
8d0b8f1e8a2953e500b9d3e654cd89d40ba0bae53a014b1bee8fb19e6580dbf33687821bb3edbffa2db8daf3fdfb521ce3232f9b4aca0f4d2661be8115220c8c
 SHA512 
a063a5e76f391a0d8011a0a1bb1fa06e6693c7efb211e5d25bfa5f39b6dc216f3c965ec1303a1d865c4b3c1484e03a4b99f3097759a0e15b15ca8b11215a3342
 DIST genpatches-4.18-12.extras.tar.xz 17508 BLAKE2B 
c324b68771942f0372d0f4f34904e3f52b021ef36453002732ab041096714cb9949f03840ab7bc2197c498ff3bfd6d8f4f7000a27e9668b9cc9d3c90e40dc466
 SHA512 
746c0bab36b8a1ca9171882cb21735378a12636ce5e157dcebe3b286abb5392c6a2e099226cce5bca77ad808c233c9f968aeceb2fc4744a94cc9c2372dacfaf9
@@ -57,9 +60,15 @@ DIST genpatches-4.18-18.extras.tar.xz 17504 BLAKE2B 
6b3b9b142b9fd254af235217c168
 DIST genpatches-4.18-19.base.tar.xz 491560 BLAKE2B 
37464af933a0611a40bb0795e2639c0b0e8ecd112a6b7664d3ce19932a25ca4c6a5f36a7eb07005abb7c85c7be3bd8fbcae6e2959031467d871f62c5b89f571e
 SHA512 
7b07af0ece2511fb4cb39ef35c9ba926a6d2e34eb24829f957876e6be6f56ad6bae89d6aa818ae81bcdffb16e26471a4fa9adcc4ac6f48efb3e53151310755c9
 DIST genpatches-4.18-19.experimental.tar.xz 5220 BLAKE2B 
ae3cfe1a10e76bd22905db948770fb51bc3181a4218f1a4f010d656ad41528ada6f6e507de1bc238cd68b6e6f3cd5a87aa7ff6a3516e441b672b902a4402ea76
 SHA512 
937b8db859823aa2612430cc24e2e4441afa20539fa2427c15182d21aaf9bb2d2cf1d520a2a9fb2d04971c9bd75b885205fda940d89ff892c290b92db1cca13f
 DIST genpatches-4.18-19.extras.tar.xz 17512 BLAKE2B 
eb3d70211535ca9fc9a58ef02304d2ff87c48acc5c47804de401599c8618cc1adede45ab2cb9bb59acfde6c7434bf8cdf32f6efd2c2fdf4d34ed619882a04b8

[gentoo-commits] repo/gentoo:master commit in: sys-cluster/slurm/, sys-cluster/slurm/files/

2018-11-10 Thread Justin Lecher
commit: 0ef6070d7a477ec5c971ccd6502b2822f3fc2fd6
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Nov 10 07:58:23 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Nov 10 11:45:05 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=0ef6070d

sys-cluster/slurm: Version Bump

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 sys-cluster/slurm/Manifest| 4 ++--
 ...17.11.7-disable-sview.patch => slurm-17.11.12-disable-sview.patch} | 0
 ...-18.08.0-disable-sview.patch => slurm-18.08.3-disable-sview.patch} | 0
 sys-cluster/slurm/{slurm-17.11.9.ebuild => slurm-17.11.12.ebuild} | 2 +-
 sys-cluster/slurm/{slurm-18.08.0.ebuild => slurm-18.08.3.ebuild}  | 2 +-
 5 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/sys-cluster/slurm/Manifest b/sys-cluster/slurm/Manifest
index 0800d99dd77..9ef55782fc5 100644
--- a/sys-cluster/slurm/Manifest
+++ b/sys-cluster/slurm/Manifest
@@ -1,2 +1,2 @@
-DIST slurm-17.11.9.tar.bz2 6258698 BLAKE2B 
53f724dfdcaec4117eedcb187b0bfced41471fff667ea3f3452b35d80ed039c14c31a75672c304816af538861fccd0dcf37c0decd32521299db2162a30b8bba0
 SHA512 
281bda70695011bbc30f56738049b2b11866d6c266c6aa5590ffcbaaa748a02fc76cd2d03834cd90f0e1f4160ee0fb3c35a7c2e53819f5e21445748d4d437e6b
-DIST slurm-18.08.0.tar.bz2 6100548 BLAKE2B 
108a64c05cf704288b2ed3627b92edb6402c41aec9866b06d7fdf18b9e0e5f5e815a7e7ded5f8d5c4ab7e9ad46368b5bc54ac52902413fc8a9395c665f11e2ed
 SHA512 
e0da38e2b8b96433c244bcad41e7dd0da56e9bf3de8a64eafd5a8d89ffb8400a3aebb2a54ec28f6c2e9804d40945bb8b53b2a9e3ac688a1d8a2a81ee71b4b11d
+DIST slurm-17.11.12.tar.bz2 6257065 BLAKE2B 
3427645f9e54e90ce5f61395a1df7f2c1c9f5582e25780daab8a05dbe92bd39841356df8e66334bc3d8ee3d81f6a56b344e81ed142cd354d22fbdb4729c554d1
 SHA512 
bd59d2d9291e00c9ab71479e2190b89a7798f1ba9a4320b003d7c1ad6d62983c1d3debfdbdfc6e0abaf66472be6e3108c4969feb151e30874d3b51f53d213803
+DIST slurm-18.08.3.tar.bz2 6092020 BLAKE2B 
63d5c7682decadc723637293660057a27a20b5ba4f0e0d53708091b86b59ed05c28ad19a70b2cf6d7c1e58df81f12fb2b5e26e44fa06cb5deacde5cd5b7db0f7
 SHA512 
2d1018e5b1520a5d71825d548d91d06d0f0a8df92b33f87d21a2238a5245a1199ca588370aea1df6ad9d09242df9a6af19ea80357dae41a0337812617721c8bf

diff --git a/sys-cluster/slurm/files/slurm-17.11.7-disable-sview.patch 
b/sys-cluster/slurm/files/slurm-17.11.12-disable-sview.patch
similarity index 100%
rename from sys-cluster/slurm/files/slurm-17.11.7-disable-sview.patch
rename to sys-cluster/slurm/files/slurm-17.11.12-disable-sview.patch

diff --git a/sys-cluster/slurm/files/slurm-18.08.0-disable-sview.patch 
b/sys-cluster/slurm/files/slurm-18.08.3-disable-sview.patch
similarity index 100%
rename from sys-cluster/slurm/files/slurm-18.08.0-disable-sview.patch
rename to sys-cluster/slurm/files/slurm-18.08.3-disable-sview.patch

diff --git a/sys-cluster/slurm/slurm-17.11.9.ebuild 
b/sys-cluster/slurm/slurm-17.11.12.ebuild
similarity index 99%
rename from sys-cluster/slurm/slurm-17.11.9.ebuild
rename to sys-cluster/slurm/slurm-17.11.12.ebuild
index 837a4d32c76..67111e2fac8 100644
--- a/sys-cluster/slurm/slurm-17.11.9.ebuild
+++ b/sys-cluster/slurm/slurm-17.11.12.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6

diff --git a/sys-cluster/slurm/slurm-18.08.0.ebuild 
b/sys-cluster/slurm/slurm-18.08.3.ebuild
similarity index 99%
rename from sys-cluster/slurm/slurm-18.08.0.ebuild
rename to sys-cluster/slurm/slurm-18.08.3.ebuild
index b3b7d52d447..d217effa43a 100644
--- a/sys-cluster/slurm/slurm-18.08.0.ebuild
+++ b/sys-cluster/slurm/slurm-18.08.3.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2018 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6



[gentoo-commits] proj/sci:master commit in: sys-cluster/mpich/files/, sys-cluster/mpich/

2018-11-10 Thread Justin Lecher
commit: f7385f2513b4f2b47adb09adc7073390e7c81172
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Nov 10 11:42:46 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Nov 10 11:42:53 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=f7385f25

sys-cluster/mpich: Version Bump

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 sys-cluster/mpich/files/mpich-3.2.1-hwloc2.patch |  42 +++
 sys-cluster/mpich/mpich-3.2.1.ebuild | 140 +++
 2 files changed, 182 insertions(+)

diff --git a/sys-cluster/mpich/files/mpich-3.2.1-hwloc2.patch 
b/sys-cluster/mpich/files/mpich-3.2.1-hwloc2.patch
new file mode 100644
index 0..415a40932
--- /dev/null
+++ b/sys-cluster/mpich/files/mpich-3.2.1-hwloc2.patch
@@ -0,0 +1,42 @@
+From ab59467c51206ac72546e4b734a1b41bf3d0345d Mon Sep 17 00:00:00 2001
+From: Kavitha Tiptur Madhu 
+Date: Fri, 19 Jan 2018 10:44:56 -0600
+Subject: [PATCH] hydra: remove replicate membind option
+
+The "replicate" option of membind is not well supported on a number of
+operating systems, and has been removed from hwloc (in v2.0) as well.
+This patch gets rid of that option in Hydra, in preparation for an
+upgrade to hwloc-2.0.
+
+Signed-off-by: Pavan Balaji 
+---
+ src/pm/hydra/tools/topo/hwloc/topo_hwloc.c | 3 ---
+ src/pm/hydra/ui/mpich/utils.c  | 1 -
+ 2 files changed, 4 deletions(-)
+
+diff --git a/src/pm/hydra/tools/topo/hwloc/topo_hwloc.c 
b/src/pm/hydra/tools/topo/hwloc/topo_hwloc.c
+index ce15fe7702..74029fad61 100644
+--- a/src/pm/hydra/tools/topo/hwloc/topo_hwloc.c
 b/src/pm/hydra/tools/topo/hwloc/topo_hwloc.c
+@@ -424,9 +424,6 @@ HYD_status HYDT_topo_hwloc_init(const char *binding, const 
char *mapping, const
+ else if (!strncmp(membind, "interleave:", strlen("interleave:"))) {
+ HYDT_topo_hwloc_info.membind = HWLOC_MEMBIND_INTERLEAVE;
+ }
+-else if (!strncmp(membind, "replicate:", strlen("replicate:"))) {
+-HYDT_topo_hwloc_info.membind = HWLOC_MEMBIND_REPLICATE;
+-}
+ else {
+ HYDU_ERR_SETANDJUMP(status, HYD_INTERNAL_ERROR,
+ "unrecognized membind policy \"%s\"\n", membind);
+diff --git a/src/pm/hydra/ui/mpich/utils.c b/src/pm/hydra/ui/mpich/utils.c
+index 9e18a754b5..a9c9dde015 100644
+--- a/src/pm/hydra/ui/mpich/utils.c
 b/src/pm/hydra/ui/mpich/utils.c
+@@ -940,7 +940,6 @@ static void bind_to_help_fn(void)
+ printf("nexttouch -- closest to process that next 
touches memory\n");
+ printf("bind:   -- bind to memory node list\n");
+ printf("interleave: -- interleave among memory node 
list\n");
+-printf("replicate:  -- replicate among memory node 
list\n");
+ }
+ 
+ static HYD_status bind_to_fn(char *arg, char ***argv)

diff --git a/sys-cluster/mpich/mpich-3.2.1.ebuild 
b/sys-cluster/mpich/mpich-3.2.1.ebuild
new file mode 100644
index 0..ae3166474
--- /dev/null
+++ b/sys-cluster/mpich/mpich-3.2.1.ebuild
@@ -0,0 +1,140 @@
+# Copyright 1999-2018 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+FORTRAN_NEEDED=fortran
+FORTRAN_STANDARD="77 90"
+
+inherit fortran-2 multilib-minimal mpi
+
+MY_PV=${PV/_/}
+DESCRIPTION="A high performance and portable MPI implementation"
+HOMEPAGE="http://www.mpich.org/";
+SRC_URI="http://www.mpich.org/static/downloads/${PV}/${P}.tar.gz";
+
+SLOT="0"
+LICENSE="mpich"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="+cxx doc fortran mpi-threads romio threads"
+
+COMMON_DEPEND="
+   >=dev-libs/libaio-0.3.109-r5[${MULTILIB_USEDEP}]
+   >=sys-apps/hwloc-1.10.0-r2[${MULTILIB_USEDEP}]
+   romio? ( net-fs/nfs-utils )
+   $(mpi_imp_deplist)"
+
+DEPEND="${COMMON_DEPEND}
+   dev-lang/perl
+   sys-devel/libtool"
+
+RDEPEND="${COMMON_DEPEND}"
+
+PATCHES=(
+   "${FILESDIR}/${P}-hwloc2.patch"
+)
+
+S="${WORKDIR}"/${PN}-${MY_PV}
+
+MULTILIB_WRAPPED_HEADERS=(
+   /usr/include/mpicxx.h
+   /usr/include/mpi.h
+   /usr/include/opa_config.h
+)
+
+src_prepare() {
+   default
+
+   # Using MPICHLIB_LDFLAGS doesn't seem to fully work.
+   sed -i 's| *@WRAPPER_LDFLAGS@ *||' \
+   src/packaging/pkgconfig/mpich.pc.in \
+   src/env/*.in \
+   || die
+}
+
+multilib_src_configure() {
+   # The configure statements can be somewhat confusing, as they
+   # don't all show up in the top level configure, however, they
+   # are picked up in the children directories.  Hence the separate
+   # local vars.
+
+   local c=
+   if use mpi-threads; then
+  

[gentoo-commits] proj/sci:master commit in: sci-libs/cblas-reference/

2018-11-01 Thread Justin Lecher
commit: b8571e136f0c12b108b260ddc4155b6b1be2609a
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Nov  1 17:58:40 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Nov  1 17:59:05 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=b8571e13

sci-libs/cblas-reference: Call cmake-utils_src_prepare

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 sci-libs/cblas-reference/cblas-reference-20161223-r101.ebuild | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/sci-libs/cblas-reference/cblas-reference-20161223-r101.ebuild 
b/sci-libs/cblas-reference/cblas-reference-20161223-r101.ebuild
index b3f4cfe68..152e56324 100644
--- a/sci-libs/cblas-reference/cblas-reference-20161223-r101.ebuild
+++ b/sci-libs/cblas-reference/cblas-reference-20161223-r101.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -34,8 +34,9 @@ PATCHES=( 
"${FILESDIR}/lapack-reference-${LPV}-fix-build-system.patch" )
 MULTILIB_WRAPPED_HEADERS=(
/usr/include/cblas/cblas.h
 )
+
 src_prepare() {
-   default
+   cmake-utils_src_prepare
 
# rename library to avoid collision with other blas implementations
# ${LIBNAME} and ${PROFNAME} are not defined here, they are in single



[gentoo-commits] repo/gentoo:master commit in: sys-kernel/aufs-sources/

2018-10-28 Thread Justin Lecher
commit: ad6bc38414f5a9bfc9896b075cdcf7ffeefa479c
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Oct 28 19:20:22 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Oct 28 19:20:22 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=ad6bc384

sys-kernel/aufs-sources: Bump to latest aufs, genpatches and linux release

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 sys-kernel/aufs-sources/Manifest   |  5 ++
 sys-kernel/aufs-sources/aufs-sources-4.19.0.ebuild | 84 ++
 2 files changed, 89 insertions(+)

diff --git a/sys-kernel/aufs-sources/Manifest b/sys-kernel/aufs-sources/Manifest
index 21ee02fd747..caa6ff5fba4 100644
--- a/sys-kernel/aufs-sources/Manifest
+++ b/sys-kernel/aufs-sources/Manifest
@@ -2,6 +2,7 @@ DIST aufs-sources-4.14.56+_p20181008.tar.xz 184372 BLAKE2B 
145c9aea8918702ad8eb6
 DIST aufs-sources-4.14_p20180702.tar.xz 182024 BLAKE2B 
f57a26a6d28b3ca347e2aa96d1b54579c3f195b9020f26ca618f228e061d6d9d2c1d93269a2927753c407b83cae91602cc751a345c20f4f6c08a93928160a1f6
 SHA512 
423e31e290e92dae1cd57e2caabc31ccc2026a027bdaa363d37686b5c0087da5346785ebe0560d5a9cb6def0c019d41734e0ede84a6fe1472ab0581a9d6e3c27
 DIST aufs-sources-4.18.11+_p20181008.tar.xz 184324 BLAKE2B 
e75f1bcb4fd020e2307a82896880a6bec8892d8d145ab740e4b72dbed0d2152a4e9b732a017a44fc9a2de6159ca30bfb709108567048e0ed7f16352ed57609d2
 SHA512 
5c4f3fa430783263f52dcdf71bf1754b8b90c10044a8e3740d9f9bdd3afcf0845039ae6ea61598e2bb8a0766dc7140ab6787d3e923f5987a781954cc3a9b614c
 DIST aufs-sources-4.18_p20181008.tar.xz 184396 BLAKE2B 
fb5939732a21a981be75fa337bb1311a3d14d7973dc6fa6ad021997c5f9a7bbf94cdb65865fd276b61c2b8d90bf1e0795cb4073914c0877946705663aca64c5d
 SHA512 
f838272b2673088458f8993c101cd6f89611f217224afc273abdfcac855f2ecebc51460895bf2d19748751ae931f3dfe9db5cc2d3f43a80b4776137cae78da5c
+DIST aufs-sources-4.19_p20181029.tar.xz 184104 BLAKE2B 
fb2016c3066bdfc91b7ecea302a3d699b62d8e5c8ce44e2c8b8f2cb6e603a862d6cd53caea97c788821abc3e944edfd989eee39849c35022418235c14a785568
 SHA512 
168b24c73743509dd355f50389e0196cc377273daa035919696264604d80cfae46402599ae5968b56e652513626373fe5fd6bc675e98ec9fff414b7c6aa90cac
 DIST genpatches-4.14-57.base.tar.xz 1472016 BLAKE2B 
1905e983d34220a97bda5eb7b1fff09d7ac42dc129b722611c079418133231d6d41f871c20df94a3db5440c8b1374d09ae3303be9e2cb8b70f5d92b61382f3ed
 SHA512 
bace21a042f6e45512a8ffe3cb329c70b3f3548142fbaddbd76b2be50f50276db8f4cc410a7d05915c30c443cc82934893203d3025cd4653387ff6fd64f0b4ae
 DIST genpatches-4.14-57.experimental.tar.xz 5216 BLAKE2B 
ac751059eb363f1327b8cc6a9ad6c993cc56e3a57010f6a7d8b30220a401ec2b607b7eda601b39f1d6480fddb45f7a980ba7ffe7cf808ae382a57cc57a785f39
 SHA512 
efb2bf34ea83789437388b6becb4c51564c885355dffdfe0f902ded0cd0a9dbc534a891a8eddde76418a651f0da41d8a7402e672688b2cccaae5897ce0bfb744
 DIST genpatches-4.14-57.extras.tar.xz 17488 BLAKE2B 
6dbe6859eafa2a61d2139572a28046a1278a965aa6a82518b5658c61f18ece4054175116b5907436bc40bd4c32458752fc381cb29806d9e25550a17f81684eab
 SHA512 
49d7a27075e7e113ef39f2da651e9302b51c66d46c4d2960acc648dcd0eb4b608118584dbcbf169d73cf1ed4e105fbae9125f06dda46d346a63f0f35bf23bb4e
@@ -56,5 +57,9 @@ DIST genpatches-4.18-18.extras.tar.xz 17504 BLAKE2B 
6b3b9b142b9fd254af235217c168
 DIST genpatches-4.18-19.base.tar.xz 491560 BLAKE2B 
37464af933a0611a40bb0795e2639c0b0e8ecd112a6b7664d3ce19932a25ca4c6a5f36a7eb07005abb7c85c7be3bd8fbcae6e2959031467d871f62c5b89f571e
 SHA512 
7b07af0ece2511fb4cb39ef35c9ba926a6d2e34eb24829f957876e6be6f56ad6bae89d6aa818ae81bcdffb16e26471a4fa9adcc4ac6f48efb3e53151310755c9
 DIST genpatches-4.18-19.experimental.tar.xz 5220 BLAKE2B 
ae3cfe1a10e76bd22905db948770fb51bc3181a4218f1a4f010d656ad41528ada6f6e507de1bc238cd68b6e6f3cd5a87aa7ff6a3516e441b672b902a4402ea76
 SHA512 
937b8db859823aa2612430cc24e2e4441afa20539fa2427c15182d21aaf9bb2d2cf1d520a2a9fb2d04971c9bd75b885205fda940d89ff892c290b92db1cca13f
 DIST genpatches-4.18-19.extras.tar.xz 17512 BLAKE2B 
eb3d70211535ca9fc9a58ef02304d2ff87c48acc5c47804de401599c8618cc1adede45ab2cb9bb59acfde6c7434bf8cdf32f6efd2c2fdf4d34ed619882a04b89
 SHA512 
35dfcc2122fe3d383bcf9da1ee032f21bc0dc4f36d29c82e829270775c21d8a816eace717a1e65938f4b01eec7b1f584f865d5a9ee997e732292f9840ace9005
+DIST genpatches-4.19-1.base.tar.xz 4088 BLAKE2B 
4cf8b20b0fdacfeb2e4e30442e3022306c5f84db838f155612c84cab2e3c74ead821f33623679f840839da6e71b6133e593c5c2650a6bd50737ab5d83127ee9b
 SHA512 
a5b00977b59030c0240ecf6a0d6d73050ab223c745c34518bff0d8a009ebb624d3fac1a574beb174e9ad48ee191bb9433e798597bfbf5ba6aea214dca6122b11
+DIST genpatches-4.19-1.experimental.tar.xz 5224 BLAKE2B 
dcedc912566883c0c57934acc23a8c5d89c95d14bc3e6f52b715562a414a535896774f5e184c1c83f1d601c32231ab3b98579eac848fd6a71ee7f833a044088a
 SHA512 
6beeb2a40e8f668f833da082d79fa33a3901891a7f062fca56f4f6182fe6d6368466ed9eef4ad1daddc62b383ec5aeb8189b09577b33fd39be9b53e1e53c920a
+DIST genpatches-4.19-1.extras.tar.xz 1748

[gentoo-commits] proj/sci:master commit in: sci-libs/gsl/

2018-10-27 Thread Justin Lecher
commit: 66fede0cb8250476db850b329baa0cfe9df6d3c0
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Oct 28 06:20:35 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Oct 28 06:21:09 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=66fede0c

sci-libs/gsl: Version Bump

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 sci-libs/gsl/gsl-2.5.ebuild | 78 +
 1 file changed, 78 insertions(+)

diff --git a/sci-libs/gsl/gsl-2.5.ebuild b/sci-libs/gsl/gsl-2.5.ebuild
new file mode 100644
index 0..3dda7b878
--- /dev/null
+++ b/sci-libs/gsl/gsl-2.5.ebuild
@@ -0,0 +1,78 @@
+# Copyright 1999-2018 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+inherit alternatives-2 autotools flag-o-matic multilib-build numeric 
toolchain-funcs
+
+DESCRIPTION="GNU Scientific Library"
+HOMEPAGE="https://www.gnu.org/software/gsl/";
+SRC_URI="mirror://gnu/${PN}/${P}.tar.gz"
+
+LICENSE="GPL-3"
+SLOT="0/23"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="cblas-external static-libs"
+
+RDEPEND="cblas-external? ( >=virtual/cblas-2.0-r3[${MULTILIB_USEDEP}] )"
+DEPEND="${RDEPEND}
+   >=virtual/pkgconfig-0-r1[${MULTILIB_USEDEP}]"
+
+PATCHES=(
+   "${FILESDIR}"/${PN}-2.3-cblas-external.patch
+   )
+
+src_prepare() {
+   default
+   eautoreconf
+   multilib_copy_sources
+}
+
+src_configure() {
+   gsl_configure() {
+   if use cblas-external; then
+   export CBLAS_LIBS="$($(tc-getPKG_CONFIG) --libs cblas)"
+   export CBLAS_CFLAGS="$($(tc-getPKG_CONFIG) --cflags 
cblas)"
+   fi
+   econf $(use_with cblas-external)
+   }
+   # fma flags, which can be enabled by -march=native, cause some tests to 
fail.
+   # https://github.com/gentoo/sci/pull/815
+   append-cflags $(test-flags-CC -mno-fma -mno-fma4)
+
+   multilib_foreach_abi run_in_build_dir gsl_configure
+}
+
+src_compile() {
+   multilib_foreach_abi run_in_build_dir default
+}
+
+src_test() {
+   multilib_foreach_abi run_in_build_dir default
+}
+
+src_install() {
+   gsl_install() {
+   local libname=gslcblas
+
+   create_pkgconfig \
+   --name  "${libname}" \
+   --description "${PN} CBLAS implementation" \
+   --libs "-l${libname}" \
+   --libs-private "-lm" \
+   --cflags "-I\${includedir}/${PN}" \
+   --version "${PV}" \
+   --url "${HOMEPAGE}" \
+   "${libname}"
+
+   GSL_ALTERNATIVES+=( /usr/$(get_libdir)/pkgconfig/cblas.pc 
${libname}.pc )
+
+   default
+   }
+   multilib_foreach_abi run_in_build_dir gsl_install
+
+   # Don't add gsl as a cblas alternative if using cblas-external
+   use cblas-external || alternatives_for cblas gsl 0 \
+   ${GSL_ALTERNATIVES[@]} \
+   /usr/include/cblas.h gsl/gsl_cblas.h
+}



[gentoo-commits] proj/sci:master commit in: eclass/

2018-10-27 Thread Justin Lecher
commit: adbf4bda26a7cd07596d98f51d110cb322ede737
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Oct 28 06:20:48 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Oct 28 06:21:10 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=adbf4bda

Enable EAPI=7

Signed-off-by: Justin Lecher  gentoo.org>

 eclass/alternatives-2.eclass   | 2 +-
 eclass/numeric-int64-multibuild.eclass | 2 +-
 eclass/numeric.eclass  | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/eclass/alternatives-2.eclass b/eclass/alternatives-2.eclass
index 4263fef8e..7237f0db3 100644
--- a/eclass/alternatives-2.eclass
+++ b/eclass/alternatives-2.eclass
@@ -23,7 +23,7 @@ case "${EAPI:-0}" in
0|1|2|3|4)
die "Unsupported EAPI=${EAPI:-0} (too old) for ${ECLASS}"
;;
-   5|6)
+   5|6|7)
;;
*)
die "Unsupported EAPI=${EAPI} (unknown) for ${ECLASS}"

diff --git a/eclass/numeric-int64-multibuild.eclass 
b/eclass/numeric-int64-multibuild.eclass
index 6403ee79c..f720356a3 100644
--- a/eclass/numeric-int64-multibuild.eclass
+++ b/eclass/numeric-int64-multibuild.eclass
@@ -19,7 +19,7 @@ if [[ ! ${_NUMERIC_INT64_MULTILIB_ECLASS} ]]; then
 case ${EAPI:-0} in
5)
inherit multilib ;;
-   6) ;;
+   6|7) ;;
*) die "EAPI=${EAPI} is not supported" ;;
 esac
 

diff --git a/eclass/numeric.eclass b/eclass/numeric.eclass
index cb7354542..431b7afec 100644
--- a/eclass/numeric.eclass
+++ b/eclass/numeric.eclass
@@ -14,7 +14,7 @@ if [[ ! ${_NUMERIC_ECLASS} ]]; then
 case ${EAPI:-0} in
0|1|2|3|4|5)
inherit multilib ;;
-   6) ;;
+   6|7) ;;
*) die "EAPI=${EAPI} is not supported" ;;
 esac
 



[gentoo-commits] proj/sci:master commit in: sci-mathematics/gambit/, sci-visualization/v_sim/, sci-libs/scikits_image/, ...

2018-10-27 Thread Justin Lecher
commit: 5cefc888f78905782495d48eef860c64f23bf319
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Oct 27 21:08:01 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Oct 27 21:08:01 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=5cefc888

Drop obsolete packages

Signed-off-by: Justin Lecher  gentoo.org>

 sci-geosciences/qgis/metadata.xml |  19 
 sci-geosciences/qgis/qgis-.ebuild | 109 --
 sci-libs/libgeodecomp/files/cmake.patch   |  17 
 sci-libs/libgeodecomp/libgeodecomp-.ebuild|  75 ---
 sci-libs/libgeodecomp/metadata.xml|  41 
 sci-libs/scikits_image/metadata.xml   |  19 
 sci-libs/scikits_image/scikits_image-.ebuild  |  52 ---
 sci-mathematics/gambit/gambit-0.2010.09.01.ebuild |  32 ---
 sci-mathematics/gambit/metadata.xml   |  20 
 sci-visualization/v_sim/metadata.xml  |  17 
 sci-visualization/v_sim/v_sim-3.6.0.ebuild|  84 -
 11 files changed, 485 deletions(-)

diff --git a/sci-geosciences/qgis/metadata.xml 
b/sci-geosciences/qgis/metadata.xml
deleted file mode 100644
index b2ca3f8c7..0
--- a/sci-geosciences/qgis/metadata.xml
+++ /dev/null
@@ -1,19 +0,0 @@
-
-http://www.gentoo.org/dtd/metadata.dtd";>
-
-   
-   sci-geoscien...@gentoo.org
-   Gentoo Geosciences Project
-   
-   
-Quantum GIS (QGIS) is a user friendly Open Source Geographic
-Information System (GIS). QGIS supports vector, raster, and database
-formats. QGIS lets you browse and create map data on your
-computer. It supports many common spatial data formats (e.g. ESRI
-ShapeFile, geotiff). QGIS supports plugins to do things like display
-tracks from your GPS. 
-
-   
-   Add support for 
sci-geosciences/grass
-   
-

diff --git a/sci-geosciences/qgis/qgis-.ebuild 
b/sci-geosciences/qgis/qgis-.ebuild
deleted file mode 100644
index 53ae4df98..0
--- a/sci-geosciences/qgis/qgis-.ebuild
+++ /dev/null
@@ -1,109 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-PYTHON_REQ_USE="sqlite"
-
-inherit cmake-utils gnome2-utils multilib python-single-r1 subversion eutils
-
-DESCRIPTION="User friendly Geographic Information System"
-HOMEPAGE="http://www.qgis.org/";
-ESVN_REPO_URI="http://svn.osgeo.org/qgis/trunk/qgis";
-SRC_URI="examples? ( 
http://download.osgeo.org/qgis/data/qgis_sample_data.tar.gz )"
-
-LICENSE="GPL-2"
-SLOT="0"
-KEYWORDS=""
-IUSE="examples gps grass gsl postgres python sqlite"
-
-REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )"
-
-RDEPEND="
-   >=sci-libs/gdal-1.6.1[geos,postgres?,python?,sqlite?]
-   dev-qt/qtcore:4[qt3support]
-   dev-qt/qtgui:4
-   dev-qt/qtsvg:4
-   dev-qt/qtsql:4
-   dev-qt/qtwebkit:4
-   sci-libs/geos
-   gps? (
-   dev-libs/expat
-   sci-geosciences/gpsbabel
-   x11-libs/qwt:6=
-   )
-   grass? ( >=sci-geosciences/grass-6.4.0_rc6[postgres?,python?,sqlite?] )
-   gsl? ( sci-libs/gsl )
-   postgres? ( dev-db/postgresql:* )
-   python? (
-   ${PYTHON_DEPS}
-   dev-python/PyQt4[sql,svg,${PYTHON_USEDEP}]
-   dev-python/sip[${PYTHON_USEDEP}] )
-   sqlite? ( dev-db/sqlite:3 )"
-
-DEPEND="${RDEPEND}
-   sys-devel/bison
-   sys-devel/flex"
-
-pkg_setup() {
-   python-single-r1_pkg_setup
-}
-
-src_configure() {
-   local mycmakeargs
-   mycmakeargs+=(
-   "-DQGIS_MANUAL_SUBDIR=/share/man/"
-   "-DBUILD_SHARED_LIBS=ON"
-   "-DBINDINGS_GLOBAL_INSTALL=ON"
-   "-DQGIS_LIB_SUBDIR=$(get_libdir)"
-   "-DQGIS_PLUGIN_SUBDIR=$(get_libdir)/qgis"
-   "-DWITH_INTERNAL_SPATIALITE:BOOL=OFF"
-   $(cmake-utils_use_with postgres POSTGRESQL)
-   $(cmake-utils_use_with grass)
-   $(cmake-utils_use_with gps EXPAT)
-   $(cmake-utils_use_with gps QWT)
-   $(cmake-utils_use_with gsl)
-   $(cmake-utils_use_with python BINDINGS)
-   $(cmake-utils_use python BINDINGS_GLOBAL_INSTALL)
-   $(cmake-utils_use_with spatialite SPATIALITE)
-   $(cmake-utils_use_enable test TESTS)
-   $(usex grass "-DGRASS_PREFIX=/usr/" "")
-   )
-
-   cmake-utils_src_configure
-}
-
-src_install() {
-   cmake-utils_src_install
-   dodoc BUGS ChangeLog CODING README
-
-   newicon -s 128 images/icons/qgis-icon.png qgis.png
-   make_desktop_entry qgis "

[gentoo-commits] proj/sci:master commit in: metadata/

2018-10-27 Thread Justin Lecher
commit: 5dd209d167dce6b94e1d50ad71df191ceae8d9b1
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Oct 27 21:15:30 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Oct 27 21:16:44 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=5dd209d1

Deprecate EAPI=6

Signed-off-by: Justin Lecher  gentoo.org>

 metadata/layout.conf  | 9 ++---
 metadata/science.conf | 1 -
 2 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/metadata/layout.conf b/metadata/layout.conf
index a02126740..91f5b7f8c 100644
--- a/metadata/layout.conf
+++ b/metadata/layout.conf
@@ -14,13 +14,16 @@ manifest-hashes = BLAKE2B SHA512
 # The following hashes are required on all Manifest entries. If any
 # of them are missing, repoman will refetch and rehash old distfiles.
 # Otherwise, old distfiles will keep using their current hash set.
-manifest-required-hashes = SHA512
+manifest-required-hashes = BLAKE2B
 
 # 2013-04-09 gentoo's council says to deprecate EAPIs 1 and 2 (bug #470670).
 # 2014-02-25 council meeting deprecated EAPIs 0 and 3.
+# 2014-03-11 council meeting banned EAPI 1.
 # 2015-10-11 council meeting deprecated EAPI 4.
+# 2016-01-10 council meeting banned EAPI 3.
+# 2018-05-13 council meeting deprecated EAPI 5 for ebuilds.
 eapis-banned = 0 1 2 3 4
-eapis-deprecated = 5
+eapis-deprecated = 5 6
 
 # Bug #337853 - gentoo's council says to enable
 # --echangelog by default for the "gentoo" repo
@@ -35,7 +38,7 @@ update-changelog = false
 cache-formats = md5-dict
 
 # Support for implicit masters is deprecated, so we need to explicitly
-# specify that this repo does not dependent on any masters, in order
+# specify that this repo does not depend on any masters, in order
 # to distinguish it from repos that rely on the deprecated behavior.
 masters = gentoo
 

diff --git a/metadata/science.conf b/metadata/science.conf
index 5c71ac1c4..2a1e51cca 100644
--- a/metadata/science.conf
+++ b/metadata/science.conf
@@ -3,4 +3,3 @@
 location = /var/lib/overlays/science
 sync-type = git
 sync-uri = git://git.gentoo.org/proj/sci.git
-



[gentoo-commits] proj/sci:master commit in: sci-chemistry/coot/

2018-10-27 Thread Justin Lecher
commit: d6daf46fde7240fbd473d8711e8527f981281187
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Oct 27 21:09:18 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Oct 27 21:09:18 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=d6daf46f

sci-chemistry/coot: ADd missing SLOT

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.51, Repoman-2.3.11

 sci-chemistry/coot/coot-.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-chemistry/coot/coot-.ebuild 
b/sci-chemistry/coot/coot-.ebuild
index ca040fa04..f13e9b681 100644
--- a/sci-chemistry/coot/coot-.ebuild
+++ b/sci-chemistry/coot/coot-.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2016 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Authors
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -68,7 +68,7 @@ RDEPEND="
dev-python/pygobject:2[${PYTHON_USEDEP}]
dev-python/pygtk:2[${PYTHON_USEDEP}]
>=net-misc/curl-7.19.6
-   net-dns/libidn
+   net-dns/libidn:0
sys-libs/readline:0=
"
 DEPEND="${RDEPEND}



[gentoo-commits] proj/sci:master commit in: sci-chemistry/ball/files/, sci-astronomy/mosstack/, sci-physics/abinit/files/, ...

2018-10-27 Thread Justin Lecher
commit: b4d1c8facd85152c22f79dccf3bff550afb64ab2
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Oct 27 20:27:08 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Oct 27 20:27:08 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=b4d1c8fa

Drop obsolete packages

Signed-off-by: Justin Lecher  gentoo.org>

 sci-astronomy/mosstack/metadata.xml|  23 --
 sci-astronomy/mosstack/mosstack-0.6.1-r1.ebuild|  33 --
 sci-astronomy/mosstack/mosstack-0.6.1.ebuild   |  33 --
 sci-biology/Gambit/Gambit-0.4.145.ebuild   |  37 --
 sci-biology/Gambit/metadata.xml|  12 -
 sci-biology/atsas/atsas-2.8.3.ebuild   |  75 
 sci-biology/atsas/metadata.xml |   8 -
 sci-chemistry/NMRdyn/NMRdyn-3.2.5.ebuild   |  78 -
 .../NMRdyn/files/NMRdyn-3.2.5-redefinition.patch   |  19 -
 sci-chemistry/NMRdyn/metadata.xml  |  11 -
 sci-chemistry/ball/ball-.ebuild|  75 
 sci-chemistry/ball/files/ball--multilib.patch  |  39 ---
 sci-chemistry/ball/metadata.xml|  35 --
 sci-chemistry/cnsface/cnsface-0.0.12.ebuild|  26 --
 sci-chemistry/cnsface/files/0.0.12-binary.patch|  13 -
 sci-chemistry/cnsface/metadata.xml |  11 -
 sci-chemistry/phenix-bin/metadata.xml  |   8 -
 .../phenix-bin/phenix-bin-1.10.2155.ebuild | 117 ---
 .../kayali/files/kayali-0.2-calcwindow.patch   |  11 -
 sci-mathematics/kayali/kayali-0.3.2.ebuild |  62 
 sci-mathematics/kayali/metadata.xml|  17 -
 sci-mathematics/mathics/mathics-1.0.ebuild |  28 --
 sci-mathematics/mathics/metadata.xml   |  24 --
 sci-physics/abinit/abinit-7.10.4.ebuild| 389 
 sci-physics/abinit/abinit-7.4.2-r1.ebuild  | 352 ---
 sci-physics/abinit/abinit-7.6.4-r1.ebuild  | 390 -
 sci-physics/abinit/files/6.12.1-autoconf.patch |  21 --
 sci-physics/abinit/files/6.12.1-xmalloc.patch  |  48 ---
 sci-physics/abinit/files/6.12.3-gui-makefiles.tbz  | Bin 14600 -> 0 bytes
 .../files/6.2.2-change-default-directories.patch   |  21 --
 sci-physics/abinit/files/7.0.4-test_dirs.patch |  12 -
 .../abinit/files/7.10.4-libabinit_options.patch|  82 -
 sci-physics/abinit/files/7.10.4-syntax.patch   |  12 -
 .../abinit/files/7.4.2-cuda_link_stdc++.patch  |  21 --
 .../abinit/files/7.4.2-levmar_diag_scaling.patch   |  21 --
 sci-physics/abinit/files/7.4.2-syntax.patch|  21 --
 .../abinit/files/7.6.3-libabinit_options.patch |  80 -
 sci-physics/abinit/files/7.6.4-cuda_header.patch   |  11 -
 .../abinit/files/7.6.4-libxc_versions.patch|  40 ---
 sci-physics/abinit/metadata.xml|  60 
 40 files changed, 2376 deletions(-)

diff --git a/sci-astronomy/mosstack/metadata.xml 
b/sci-astronomy/mosstack/metadata.xml
deleted file mode 100644
index 2cc9b1528..0
--- a/sci-astronomy/mosstack/metadata.xml
+++ /dev/null
@@ -1,23 +0,0 @@
-
-http://www.gentoo.org/dtd/metadata.dtd";>
-
-   
-   mikko.la...@gmail.com
-   Mikko Laine
-   
-   
-An open source stacking software for astronomical images taken with a DSLR
-camera. Mosstack can calibrate, debayer, register, align and stack photos
-taken with modern DSLR's from Canon. It has a command line user interface
-inspired by AstroSurf IRIS and a graphical user interface written with PyQt4
-
-   
-   Enables OpenCL support and pulls in 
pyopencl. This makes
-some operations much faster but requires specific hardware and drivers.
-   Pulls in PyQt4. Program works on command line 
interface
-without it but for GUI the library is required.
-   
-   
-   mikko_laine/mosstack
-   
-

diff --git a/sci-astronomy/mosstack/mosstack-0.6.1-r1.ebuild 
b/sci-astronomy/mosstack/mosstack-0.6.1-r1.ebuild
deleted file mode 100644
index 3901240b1..0
--- a/sci-astronomy/mosstack/mosstack-0.6.1-r1.ebuild
+++ /dev/null
@@ -1,33 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python3_4 )
-
-inherit distutils-r1
-
-DESCRIPTION="Stacking software for astronomical images"
-HOMEPAGE="https://sites.google.com/site/mosstack";
-SRC_URI="http://bitbucket.org/mikko_laine/mosstack/downloads/${P}.tar.gz";
-
-LICENSE="GPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-
-IUSE="opencl qt4"
-
-DEPEND=">=dev-python/numpy-1.8.0[${PYTHON_USEDEP}]
-   dev-python/cython[${PYTHON_USEDEP}]"
-
-RDEPEND=">=dev-python/pillow-2.3.0[${PYTHON_USEDEP}]
-   sci-libs/scikits_image[${PYTHON_USEDEP}]
-   >media-gfx/imagemagick-6.8.0.0
-   sci-astronomy/sex

[gentoo-commits] proj/sci:master commit in: sci-libs/openblas/, sci-libs/pfft/

2018-10-27 Thread Justin Lecher
commit: 90fe0788e27f6822a3e9eda70e0dfdc1a59cc04e
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Oct 27 20:23:48 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Oct 27 20:23:48 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=90fe0788

Sort keywords

Signed-off-by: Justin Lecher  gentoo.org>

 sci-libs/openblas/openblas-0.2.19-r1.ebuild | 2 +-
 sci-libs/openblas/openblas-0.2.20.ebuild| 2 +-
 sci-libs/pfft/pfft-1.0.7_alpha.ebuild   | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/sci-libs/openblas/openblas-0.2.19-r1.ebuild 
b/sci-libs/openblas/openblas-0.2.19-r1.ebuild
index 11b5deefb..38378cecd 100644
--- a/sci-libs/openblas/openblas-0.2.19-r1.ebuild
+++ b/sci-libs/openblas/openblas-0.2.19-r1.ebuild
@@ -14,7 +14,7 @@ SRC_URI="https://github.com/xianyi/OpenBLAS/tarball/v${PV} -> 
${P}.tar.gz
 
 LICENSE="BSD"
 SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x64-macos ~x86-linux ~x86-macos"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
 IUSE="dynamic openmp static-libs threads"
 
 RDEPEND=""

diff --git a/sci-libs/openblas/openblas-0.2.20.ebuild 
b/sci-libs/openblas/openblas-0.2.20.ebuild
index f65231aa7..838c334d6 100644
--- a/sci-libs/openblas/openblas-0.2.20.ebuild
+++ b/sci-libs/openblas/openblas-0.2.20.ebuild
@@ -13,7 +13,7 @@ SRC_URI="https://github.com/xianyi/OpenBLAS/tarball/v${PV} -> 
${P}.tar.gz"
 
 LICENSE="BSD"
 SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x64-macos ~x86-linux ~x86-macos"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
 IUSE="dynamic openmp static-libs threads"
 
 RDEPEND=""

diff --git a/sci-libs/pfft/pfft-1.0.7_alpha.ebuild 
b/sci-libs/pfft/pfft-1.0.7_alpha.ebuild
index 2bdccee66..612564e0b 100644
--- a/sci-libs/pfft/pfft-1.0.7_alpha.ebuild
+++ b/sci-libs/pfft/pfft-1.0.7_alpha.ebuild
@@ -15,7 +15,7 @@ if [[ $PV = * ]] ; then
AUTOTOOLS_AUTORECONF=1
 else

SRC_URI="https://www-user.tu-chemnitz.de/~potts/workgroup/pippig/software/${P//_/-}.tar.gz";
-   KEYWORDS="~x86 ~amd64"
+   KEYWORDS="~amd64 ~x86"
S="${WORKDIR}/${P//_/-}"
 fi
 



[gentoo-commits] proj/sci:master commit in: sci-biology/trinityrnaseq/, sci-biology/libBigWig/, sci-biology/graf-bin/, ...

2018-10-27 Thread Justin Lecher
commit: 307a9995cc3b29bd9726ad7ade53132c7c08f7fa
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Oct 27 20:03:05 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Oct 27 20:07:56 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=307a9995

Sort keywords

Signed-off-by: Justin Lecher  gentoo.org>

 sci-biology/MolBioLib/MolBioLib-5.ebuild   | 2 +-
 sci-biology/bwa/bwa-0.7.17.ebuild  | 2 +-
 sci-biology/gatk/gatk-3.8.1.ebuild | 2 +-
 sci-biology/gatk/gatk-.ebuild  | 2 +-
 sci-biology/graf-bin/graf-bin-20171212.ebuild  | 2 +-
 sci-biology/igv/igv-2.3.81.ebuild  | 2 +-
 sci-biology/igv/igv-2.3.88.ebuild  | 2 +-
 sci-biology/igv/igv-2.3.92.ebuild  | 2 +-
 sci-biology/jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild | 2 +-
 sci-biology/jtreeview/jtreeview-1.1.6.4.ebuild | 2 +-
 sci-biology/jtreeview/jtreeview-.ebuild| 2 +-
 sci-biology/libBigWig/libBigWig-0.4.0.ebuild   | 2 +-
 sci-biology/libBigWig/libBigWig-.ebuild| 2 +-
 sci-biology/mira/mira-4.9.5.ebuild | 2 +-
 sci-biology/nxtrim/nxtrim-.ebuild  | 2 +-
 sci-biology/oncotator/oncotator-1.9.2.0.ebuild | 2 +-
 sci-biology/phusion/phusion-2.1c.ebuild| 2 +-
 sci-biology/portrait/portrait-1.1.ebuild   | 3 +--
 sci-biology/pysamstats/pysamstats-0.24.2.ebuild| 2 +-
 sci-biology/trinityrnaseq/trinityrnaseq-2.6.6.ebuild   | 2 +-
 sci-libs/fast5/fast5-0.6.4.ebuild  | 2 +-
 sci-libs/openblas/openblas-0.2.19-r1.ebuild| 2 +-
 sci-libs/openblas/openblas-0.2.20.ebuild   | 2 +-
 23 files changed, 23 insertions(+), 24 deletions(-)

diff --git a/sci-biology/MolBioLib/MolBioLib-5.ebuild 
b/sci-biology/MolBioLib/MolBioLib-5.ebuild
index 2775e2faf..681758724 100644
--- a/sci-biology/MolBioLib/MolBioLib-5.ebuild
+++ b/sci-biology/MolBioLib/MolBioLib-5.ebuild
@@ -9,7 +9,7 @@ 
SRC_URI="https://sourceforge.net/projects/molbiolib/files/MolBioLib_public.versi
 
 LICENSE="GPL-3"
 SLOT="0"
-KEYWORDS=""
+KEYWORDS="" # does not build
 IUSE="doc"
 
 # contains bundled samtools-0.1.18 and bamtools (pezmaster31-bamtools-d553a62) 
which contains jsoncpp

diff --git a/sci-biology/bwa/bwa-0.7.17.ebuild 
b/sci-biology/bwa/bwa-0.7.17.ebuild
index 9d4e13e57..429ba43e6 100644
--- a/sci-biology/bwa/bwa-0.7.17.ebuild
+++ b/sci-biology/bwa/bwa-0.7.17.ebuild
@@ -12,7 +12,7 @@ SRC_URI="mirror://sourceforge/bio-bwa/${P}.tar.bz2"
 LICENSE="GPL-3"
 SLOT="0"
 IUSE=""
-KEYWORDS="~amd64 ~x64-macos ~x86"
+KEYWORDS="~amd64 ~x86 ~x64-macos"
 
 RDEPEND="dev-lang/perl"
 

diff --git a/sci-biology/gatk/gatk-3.8.1.ebuild 
b/sci-biology/gatk/gatk-3.8.1.ebuild
index c5e44747a..f46c1d322 100644
--- a/sci-biology/gatk/gatk-3.8.1.ebuild
+++ b/sci-biology/gatk/gatk-3.8.1.ebuild
@@ -18,7 +18,7 @@ EGIT_COMMIT="41147a655594c2aae6e2cad8462bd1648570b32b"
 LICENSE="MIT"
 SLOT="0"
 IUSE=""
-KEYWORDS=""${W} # 134MB 608.21 MiB and download git ~amd64""
+KEYWORDS="~amd64" # 608.21 MiB git download and 134MB "${W}"/.m2 download
 
 COMMON_DEPS=""
 DEPEND="

diff --git a/sci-biology/gatk/gatk-.ebuild 
b/sci-biology/gatk/gatk-.ebuild
index 83149fb0f..fc9db8986 100644
--- a/sci-biology/gatk/gatk-.ebuild
+++ b/sci-biology/gatk/gatk-.ebuild
@@ -21,7 +21,7 @@ EGIT_CLONE_TYPE="mirror"
 LICENSE="BSD-3" # since gatk-4
 SLOT="0"
 IUSE=""
-KEYWORDS=""${W} # 134MB 148.19 MB and download git"
+KEYWORDS="" # 148.19 MB git download and 134MB "${W}"/.m2 download
 
 COMMON_DEPS=""
 # gatk-4 needs java-1.8

diff --git a/sci-biology/graf-bin/graf-bin-20171212.ebuild 
b/sci-biology/graf-bin/graf-bin-20171212.ebuild
index 710eb5595..93d554892 100644
--- a/sci-biology/graf-bin/graf-bin-20171212.ebuild
+++ b/sci-biology/graf-bin/graf-bin-20171212.ebuild
@@ -12,7 +12,7 @@ 
SRC_URI="http://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/GetZip.cgi?zip_name=GR
 
 LICENSE="public-domain"
 SLOT="0"
-KEYWORDS="~amd64"
+KEYWORDS="~amd64" # 64bit exe only
 IUSE=""
 
 DEPEND=""

diff --git a/sci-biology/igv/igv-2.3.81.ebuild 
b/sci-biology/igv/igv-2.3.81.ebuild
index b870b0e98..5fabefeb3 100644
--- a/sci-biology/igv/igv-2.3.81.ebuild
+++ b/sci-biology/igv/igv-2.3.81.ebuild
@@ -26,7 +26,7 @@ HOMEPAGE="http://www.broadinstitute.org/igv/";
 LICENSE="LGPL-2.1"
 SLOT="0"
 IUSE=""
-KEYWORDS=""
+KEYWORDS="" # 
igv-2.3.81/src/com/iontorrent/views/FlowSignalDistributionP

[gentoo-commits] proj/sci:master commit in: dev-java/jrosetta/, sci-mathematics/slepc/, sci-biology/pysamstats/, ...

2018-10-27 Thread Justin Lecher
commit: aef6b7cc29677f3720adb39bebdc124ab6f64aa7
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Oct 27 19:45:04 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Oct 27 19:45:04 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=aef6b7cc

Sort keywords

Signed-off-by: Justin Lecher  gentoo.org>

 dev-java/flexdock/flexdock-1.1.1.ebuild   | 2 +-
 dev-java/flexdock/flexdock-1.2.4.ebuild   | 2 +-
 dev-java/htsjdk/htsjdk-2.5.1.ebuild   | 2 +-
 dev-java/htsjdk/htsjdk-.ebuild| 2 +-
 dev-java/jrosetta/jrosetta-1.0.4.ebuild   | 2 +-
 dev-python/ffnet/ffnet-0.7.1.ebuild   | 2 +-
 dev-python/ffnet/ffnet-0.8.3.ebuild   | 2 +-
 dev-python/ffnetui/ffnetui-0.8.3.2.ebuild | 2 +-
 dev-python/python-vxi11/python-vxi11-0.8.ebuild   | 2 +-
 dev-util/f90cache/f90cache-0.99.ebuild| 2 +-
 media-libs/avbin-bin/avbin-bin-8.1.ebuild | 2 +-
 sci-biology/MolBioLib/MolBioLib-5.ebuild  | 2 +-
 sci-biology/bwa/bwa-0.7.17.ebuild | 2 +-
 sci-biology/clover/clover-2011.10.24.ebuild   | 2 +-
 sci-biology/estscan/estscan-3.0.3.ebuild  | 2 +-
 sci-biology/gatk/gatk-3.8.1.ebuild| 2 +-
 sci-biology/gatk/gatk-.ebuild | 2 +-
 sci-biology/graf-bin/graf-bin-20171212.ebuild | 2 +-
 sci-biology/igv/igv-2.3.81.ebuild | 2 +-
 sci-biology/igv/igv-2.3.88.ebuild | 2 +-
 sci-biology/igv/igv-2.3.92.ebuild | 2 +-
 sci-biology/jtreeview-bin/jtreeview-bin-1.1.6.4.ebuild| 2 +-
 sci-biology/jtreeview/jtreeview-1.1.6.4.ebuild| 2 +-
 sci-biology/jtreeview/jtreeview-.ebuild   | 2 +-
 sci-biology/libBigWig/libBigWig-0.4.0.ebuild  | 2 +-
 sci-biology/libBigWig/libBigWig-.ebuild   | 2 +-
 sci-biology/mira/mira-4.9.5.ebuild| 2 +-
 sci-biology/mne-python/mne-python-0.7.ebuild  | 2 +-
 sci-biology/nxtrim/nxtrim-.ebuild | 2 +-
 sci-biology/oncotator/oncotator-1.9.2.0.ebuild| 2 +-
 sci-biology/phusion/phusion-2.1c.ebuild   | 2 +-
 sci-biology/portrait/portrait-1.1.ebuild  | 3 ++-
 sci-biology/pysamstats/pysamstats-0.24.2.ebuild   | 2 +-
 sci-biology/trans-abyss/trans-abyss-1.4.8.ebuild  | 2 +-
 sci-biology/trinityrnaseq/trinityrnaseq-2.6.6.ebuild  | 2 +-
 sci-biology/wcd/wcd-0.6.3.ebuild  | 2 +-
 sci-chemistry/nwchem/nwchem-6.3_p2-r1.ebuild  | 2 +-
 sci-chemistry/nwchem/nwchem-6.5_p26243-r7.ebuild  | 2 +-
 sci-chemistry/nwchem/nwchem-6.6_p27746-r2.ebuild  | 2 +-
 sci-libs/fast5/fast5-0.6.4.ebuild | 2 +-
 sci-libs/libfac/libfac-3.1.1.ebuild   | 2 +-
 sci-libs/libmatheval/libmatheval-1.1.10.ebuild| 2 +-
 sci-libs/modglue/modglue-1.19.ebuild  | 2 +-
 sci-libs/openblas/openblas-0.2.19-r1.ebuild   | 2 +-
 sci-libs/openblas/openblas-0.2.20.ebuild  | 2 +-
 sci-mathematics/cipi/cipi-1.0.ebuild  | 2 +-
 sci-mathematics/giac/giac-1.1.0.ebuild| 2 +-
 sci-mathematics/kash-bin/kash-bin-3.ebuild| 2 +-
 sci-mathematics/lattE-macchiato/lattE-macchiato-0.9.3.ebuild  | 2 +-
 sci-mathematics/lie/lie-2.2.2.ebuild  | 2 +-
 sci-mathematics/mathics/mathics-1.0.ebuild| 2 +-
 sci-mathematics/petsc/petsc-3.10.0.ebuild | 2 +-
 sci-mathematics/petsc/petsc-3.8.4.ebuild  | 2 +-
 sci-mathematics/petsc/petsc-3.9.4.ebuild  | 2 +-
 sci-mathematics/slepc/slepc-3.10.0.ebuild | 2 +-
 sci-mathematics/slepc/slepc-3.8.2.ebuild  | 2 +-
 sci-mathematics/slepc/slepc-3.9.0.ebuild  | 2 +-
 sci-physics/fullprof-bin/fullprof-bin-20313.04.ebuild | 2 +-
 sys-cluster/hpl/hpl-2.0-r1.ebuild | 2 +-
 sys-cluster/hpl/hpl-2.1.ebuild| 2 +-
 sys-cluster/modules/modules-3.2.9c-r1.ebuild  | 2 +-
 sys-cluster/mvapich2/mvapich2-1.6-r1.ebuild   | 2 +-
 virtual/perl-encoding-warnings/perl-encoding-warn

[gentoo-commits] proj/sci:master commit in: dev-util/nvidia-cuda-gdk/

2018-10-27 Thread Justin Lecher
commit: 2b7f42ff32126bdf7f210bf6f4e66d54e401360a
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Oct 27 16:05:06 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Oct 27 16:05:06 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=2b7f42ff

dev-util/nvidia-cuda-gdk: Drop bad dependency

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 dev-util/nvidia-cuda-gdk/nvidia-cuda-gdk-352.79.ebuild | 7 ++-
 1 file changed, 2 insertions(+), 5 deletions(-)

diff --git a/dev-util/nvidia-cuda-gdk/nvidia-cuda-gdk-352.79.ebuild 
b/dev-util/nvidia-cuda-gdk/nvidia-cuda-gdk-352.79.ebuild
index e629e556d..6a815da47 100644
--- a/dev-util/nvidia-cuda-gdk/nvidia-cuda-gdk-352.79.ebuild
+++ b/dev-util/nvidia-cuda-gdk/nvidia-cuda-gdk-352.79.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -23,10 +23,7 @@ RDEPEND="
>=dev-util/nvidia-cuda-toolkit-7.5
media-libs/freeglut
examples? ( >=x11-drivers/nvidia-drivers-352.79[uvm] )
-   nvvs? (
-   >=x11-drivers/nvidia-drivers-352.79[uvm]
-   =x11-drivers/nvidia-drivers-352.79[uvm] )
"
 DEPEND="${RDEPEND}"
 



[gentoo-commits] proj/sci:master commit in: dev-python/pythonqt/files/, dev-python/pythonqt/

2018-10-27 Thread Justin Lecher
commit: 11487357685b9d0c29c03870ca8a69668e9589de
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Oct 27 12:45:11 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Oct 27 12:45:11 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=11487357

Drop obsolete packages

Signed-off-by: Justin Lecher  gentoo.org>

 .../pythonqt/files/pythonqt-2.1-lib_location.patch | 22 -
 .../files/pythonqt--lib_location.patch | 20 
 dev-python/pythonqt/metadata.xml   | 11 ---
 dev-python/pythonqt/pythonqt-2.1.ebuild| 32 ---
 dev-python/pythonqt/pythonqt-.ebuild   | 36 --
 5 files changed, 121 deletions(-)

diff --git a/dev-python/pythonqt/files/pythonqt-2.1-lib_location.patch 
b/dev-python/pythonqt/files/pythonqt-2.1-lib_location.patch
deleted file mode 100644
index f86772ad1..0
--- a/dev-python/pythonqt/files/pythonqt-2.1-lib_location.patch
+++ /dev/null
@@ -1,22 +0,0 @@
 PythonQt2.1_Qt4.8/CMakeLists.txt.auto-diff-temp2012-11-30 
16:38:06.374358937 +0100
-+++ PythonQt2.1_Qt4.8/CMakeLists.txt   2012-11-30 16:39:37.421438916 +0100
-@@ -215,7 +215,7 @@
- # See http://blog.onesadcookie.com/2008/01/installname-magic.html
- #
- set_target_properties(PythonQt  PROPERTIES
--  INSTALL_NAME_DIR "${CMAKE_INSTALL_PREFIX}/lib"
-+  INSTALL_NAME_DIR "${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX}"
-   )
- 
- target_link_libraries(PythonQt
-@@ -228,8 +228,8 @@
- 
- install(TARGETS PythonQt
- RUNTIME DESTINATION bin
--LIBRARY DESTINATION lib
--ARCHIVE DESTINATION lib)
-+LIBRARY DESTINATION lib${LIB_SUFFIX}
-+ARCHIVE DESTINATION lib${LIB_SUFFIX})
- install(FILES ${headers} DESTINATION include/PythonQt)
- 
- MESSAGE(STATUS "<<< Gentoo configuration >>>

diff --git a/dev-python/pythonqt/files/pythonqt--lib_location.patch 
b/dev-python/pythonqt/files/pythonqt--lib_location.patch
deleted file mode 100644
index f8d5322ae..0
--- a/dev-python/pythonqt/files/pythonqt--lib_location.patch
+++ /dev/null
@@ -1,20 +0,0 @@
 pythonqt-/CMakeLists.txt.auto-diff-temp2012-11-30 
17:02:28.754418411 +0100
-+++ pythonqt-/CMakeLists.txt   2012-11-30 17:02:58.158429034 +0100
-@@ -215,7 +215,7 @@
- # See http://blog.onesadcookie.com/2008/01/installname-magic.html
- #
- set_target_properties(PythonQt  PROPERTIES
--  INSTALL_NAME_DIR "${CMAKE_INSTALL_PREFIX}/lib"
-+  INSTALL_NAME_DIR "${CMAKE_INSTALL_PREFIX}/lib${LIB_SUFFIX}"
-   )
- 
- target_link_libraries(PythonQt
-@@ -228,6 +228,6 @@
- 
- install(TARGETS PythonQt
- RUNTIME DESTINATION bin
--LIBRARY DESTINATION lib
--ARCHIVE DESTINATION lib)
-+LIBRARY DESTINATION lib${LIB_SUFFIX}
-+ARCHIVE DESTINATION lib${LIB_SUFFIX})
- install(FILES ${headers} DESTINATION include/PythonQt)

diff --git a/dev-python/pythonqt/metadata.xml b/dev-python/pythonqt/metadata.xml
deleted file mode 100644
index 59cf1334d..0
--- a/dev-python/pythonqt/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-
-http://www.gentoo.org/dtd/metadata.dtd";>
-
-   
-   s...@gentoo.org
-   Gentoo Science Project
-   
-   
-   pythonqt
-   
-

diff --git a/dev-python/pythonqt/pythonqt-2.1.ebuild 
b/dev-python/pythonqt/pythonqt-2.1.ebuild
deleted file mode 100644
index 05fef80f9..0
--- a/dev-python/pythonqt/pythonqt-2.1.ebuild
+++ /dev/null
@@ -1,32 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit cmake-utils python-single-r1
-
-MY_PN="PythonQt"
-MY_P="${MY_PN}${PV}"
-
-DESCRIPTION="A dynamic Python binding for the Qt framework"
-HOMEPAGE="http://pythonqt.sourceforge.net/";
-SRC_URI="mirror://sourceforge/pythonqt/pythonqt/${MY_PN}-${PV}/${MY_P}_Qt4.8.zip"
-
-LICENSE="LGPL-2.1"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE=""
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-DEPEND="${PYTHON_DEPS}
-   dev-qt/qtcore:4
-   dev-qt/qtgui:4"
-RDEPEND="${DEPEND}"
-
-S="${WORKDIR}/${MY_P}_Qt4.8"
-
-PATCHES=( "${FILESDIR}"/${P}-lib_location.patch )
-EPATCH_OPTS="--binary"

diff --git a/dev-python/pythonqt/pythonqt-.ebuild 
b/dev-python/pythonqt/pythonqt-.ebuild
deleted file mode 100644
index 8858869f8..0
--- a/dev-python/pythonqt/pythonqt-.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit cmake-utils python-single-r1 subversion
-
-MY_PN="PythonQt"
-MY_P="${MY_PN}${PV}"
-
-DESCRIPTION=&qu

[gentoo-commits] proj/sci:master commit in: sci-biology/gbench/

2018-10-27 Thread Justin Lecher
commit: e13c803fe9c9c8917720bf5d2e499bc2086c07b3
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Oct 27 12:32:32 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Oct 27 12:32:32 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=e13c803f

Drop broken package

Signed-off-by: Justin Lecher  gentoo.org>

 sci-biology/gbench/gbench-2.11.7.ebuild | 89 -
 sci-biology/gbench/metadata.xml |  8 ---
 2 files changed, 97 deletions(-)

diff --git a/sci-biology/gbench/gbench-2.11.7.ebuild 
b/sci-biology/gbench/gbench-2.11.7.ebuild
deleted file mode 100644
index 58631ce43..0
--- a/sci-biology/gbench/gbench-2.11.7.ebuild
+++ /dev/null
@@ -1,89 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-inherit python-single-r1 wxwidgets
-
-DESCRIPTION="View and analyze genome sequences"
-HOMEPAGE="http://www.ncbi.nlm.nih.gov/projects/gbench/";
-SRC_URI="ftp://ftp.ncbi.nlm.nih.gov/toolbox/gbench/ver-"${PV}"/gbench-src-"${PV}".tgz";
-
-LICENSE="public-domain"
-SLOT="0"
-KEYWORDS=""
-#KEYWORDS="~amd64 ~x86"
-IUSE="xml ssl sybase-ct zlib lzo pcre gnutls freetds mysql berkdb python 
opengl glut icu expat sqlite hdf5 jpeg png tiff gif xpm sybase threads fltk cgi"
-
-REQUIRED_USE="${PYTHON_REQUIRED_USE}"
-
-RDEPEND="${PYTHON_DEPS}
-   app-arch/bzip2
-   app-text/sablotron
-   dev-cpp/muParser
-   dev-libs/boost:=
-   dev-libs/expat
-   dev-libs/icu
-   dev-libs/libxslt
-   lzo? ( dev-libs/lzo )
-   dev-libs/xalan-c
-   dev-libs/xerces-c
-   dev-util/cppunit
-   media-libs/freetype
-   media-libs/giflib
-   media-libs/tiff:0=
-   || ( sci-biology/ncbi-tools++ sci-biology/sra_sdk )
-   gnutls? ( net-libs/gnutls )
-   hdf5? ( sci-libs/hdf5 )
-   sys-fs/fuse:=
-   berkdb? ( >=sys-libs/db-4.3:* )
-   glut? ( virtual/glu )
-   opengl? ( virtual/opengl
-   media-libs/ftgl
-   media-libs/glew:= )
-   x11-libs/fltk
-   >=x11-libs/gtk+-2:*
-   x11-libs/wxGTK:*
-   mysql? ( virtual/mysql )
-   pcre? ( dev-libs/libpcre )
-   sqlite? ( dev-db/sqlite:3= )
-   ssl? ( dev-libs/openssl:0= )
-   sybase-ct? ( dev-db/freetds )
-   xml? ( dev-libs/libxml2:2= )
-   xpm? (
-   x11-libs/libXpm
-   virtual/jpeg:0=
-   media-libs/libpng:0=
-   sys-libs/zlib
-   )
-"
-DEPEND="${RDEPEND}"
-
-# recycle ebuild logic from ncbi-tools++
-
-S="${WORKDIR}"/gbench-src-"${PV}"
-
-src_configure(){
-   # configure: error: --mandir=/usr/share/man:  unknown option;  use 
--help to show usage
-   # configure: error: --infodir=/usr/share/info:  unknown option;  use 
--help to show usage
-   # configure: error: --datadir=/usr/share:  unknown option;  use --help 
to show usage
-   # configure: error: --sysconfdir=/etc:  unknown option;  use --help to 
show usage
-   # configure: error: --localstatedir=/var/lib:  unknown option;  use 
--help to show usage
-   ./configure --prefix="${DESTDIR}"/"${EPREFIX}/usr" 
--libdir="${EPREFIX}/usr/$(get_libdir)" \
-   --without-downloaded-vdb \
-   CC="$(tc-getCC)" CFLAGS="${CFLAGS}" CXXFLAGS="${CXXFLAGS}" 
LDFLAGS="${LDFLAGS}" || die
-}
-
-# Doh, it runs git during configure phase if it could not find NCBI SRA VDB
-# by executing ./scripts/common/add_vdb.sh which points to 
https://github.com/ncbi/ncbi-vdb
-# But, we already have sci-biology/sra_sdk which blocks 
sci-biology/ncbi-tools++
-# as some files overlap. Seems ncbi-vdb is yet another smaller subset of either
-# of the two?
-#
-# Same come checking out ncbi-vdb should be in ncbi-tools++-18.0.0 .
-#
-#   That behavior is entirely optional; you can suppress it by
-#   configuring the Toolkit --without-downloaded-vdb, --with-vdb=PATH (e.g.,
-#   --with-vdb=/usr), or --without-vdb altogether.

diff --git a/sci-biology/gbench/metadata.xml b/sci-biology/gbench/metadata.xml
deleted file mode 100644
index 8417d1580..0
--- a/sci-biology/gbench/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-
-http://www.gentoo.org/dtd/metadata.dtd";>
-
-   
-   sci-biol...@gentoo.org
-   Gentoo Biology Project
-   
-



[gentoo-commits] proj/sci:master commit in: /

2018-10-27 Thread Justin Lecher
commit: 5c948ce2a88e62b745e6d0345e5c45e9dfbf5817
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Oct 27 12:18:51 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Oct 27 12:19:20 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=5c948ce2

Bump portage for travis

Signed-off-by: Justin Lecher  gentoo.org>

 .travis.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.travis.yml b/.travis.yml
index 3d53c8b53..241a06e33 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -7,7 +7,7 @@ cache: pip
 python:
 - pypy
 env:
-- PORTAGE_VER="2.3.40"
+- PORTAGE_VER="2.3.51"
 before_install:
 - sudo apt-get -qq update
 install:



[gentoo-commits] proj/sci:master commit in: media-libs/avbin-bin/

2018-10-27 Thread Justin Lecher
commit: 6f13a8e6110bc0b55c726d71819b1fc4aea5a996
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 20:48:56 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Oct 27 12:19:19 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=6f13a8e6

media-libs/avbin-bin: Clean old

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 media-libs/avbin-bin/avbin-bin-7.ebuild | 27 ---
 1 file changed, 27 deletions(-)

diff --git a/media-libs/avbin-bin/avbin-bin-7.ebuild 
b/media-libs/avbin-bin/avbin-bin-7.ebuild
deleted file mode 100644
index 180439259..0
--- a/media-libs/avbin-bin/avbin-bin-7.ebuild
+++ /dev/null
@@ -1,27 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-DESCRIPTION="A thin wrapper around FFmpeg"
-HOMEPAGE="http://avbin.github.io/";
-SRC_URI="
-   amd64? ( mirror://github/AVbin/AVbin/avbin-linux-x86-64-${PV}.tar.gz )
-   x86? ( mirror://github/AVbin/AVbin/avbin-linux-x86-32-${PV}.tar.gz )"
-
-LICENSE="GPL-3 LGPL-3"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 -*"
-IUSE=""
-
-pkg_setup(){
-   if use amd64; then
-   S="${WORKDIR}"/avbin-linux-x86-64-${PV}
-   elif use x86; then
-   S="${WORKDIR}"/avbin-linux-x86-32-${PV}
-   fi
-}
-src_install() {
-   ln -s libavbin.so.${PV} libavbin.so || die
-   dolib libavbin.so*
-}



[gentoo-commits] repo/gentoo:master commit in: sys-cluster/slurm/

2018-10-27 Thread Justin Lecher
commit: c4c3069edbfb9bb37bc73cde4e9df278d84f59ae
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Oct 27 12:15:08 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Oct 27 12:15:29 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c4c3069e

sys-cluster/slurm: Don't install non-existing files

Closes: https://bugs.gentoo.org/665514
Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sys-cluster/slurm/slurm-18.08.0.ebuild | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/sys-cluster/slurm/slurm-18.08.0.ebuild 
b/sys-cluster/slurm/slurm-18.08.0.ebuild
index 837a4d32c76..b3b7d52d447 100644
--- a/sys-cluster/slurm/slurm-18.08.0.ebuild
+++ b/sys-cluster/slurm/slurm-18.08.0.ebuild
@@ -191,12 +191,9 @@ src_install() {
doins \
etc/bluegene.conf.example \
etc/cgroup.conf.example \
-   etc/cgroup_allowed_devices_file.conf.example \
etc/slurm.conf.example \
etc/slurmdbd.conf.example
exeinto /etc/slurm
-   doexe \
-   etc/slurm.epilog.clean
keepdir /etc/slurm/layouts.d
insinto /etc/slurm/layouts.d
newins etc/layouts.d.power.conf.example power.conf.example



[gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/

2018-10-21 Thread Justin Lecher
commit: 100610a395b7ab2f37725af000cb424d1ebac67a
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Oct 21 11:54:58 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Oct 21 11:55:08 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=100610a3

sci-biology/rebase: Version Bump

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sci-biology/rebase/Manifest   |  1 +
 sci-biology/rebase/rebase-1810.ebuild | 45 +++
 2 files changed, 46 insertions(+)

diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index 8eb06d8cba3..0d935c9e58c 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -4,3 +4,4 @@ DIST rebase-1703.tar.xz 122252304 BLAKE2B 
26afca990e300a5c471f55b1a168b1930212a3
 DIST rebase-1704.tar.xz 124351900 BLAKE2B 
bdbda714cc07f744b56c83b80a1b0f0a724a990b200c615458852910f282761aaf37a312a388ec7fee94a62ead47e01ddca8b205f2ad05d780a299e7547206f7
 SHA512 
0e4019d41ccbae86b8cb1f6dfa4c34d3fccbe084a330f04f2fdb774186e35c761655e1619d9a90d444ea3bab0910df1b60cf9a249ee31d66a254d28dd6b32cc7
 DIST rebase-1803.tar.xz 152581448 BLAKE2B 
7907f0aee9e202f062f5ec4b5e4a112cd0fb3900b3d65dc57ffe4832c5aac088f50c2661f1b9c1bb8b57e7b4f6d453bec2899b460383d06b4e679da13e92aad2
 SHA512 
ab718e87c33c975bc6a93d3c6be130c9751612b744dc5451bcfde5c10d3d9d68ed4a4d921fff1f48063bfa2e9f3c8a016d4e5e0afa4eb7e4131511767608534b
 DIST rebase-1806.tar.xz 161844712 BLAKE2B 
901167b502b85e88eaa9a8886c5ccac8bf1ec16a7736694b90f896bd4d87ae3792d09f6b154118a6063e30b94a5633b37a7811aefc1d39467d0043d887aeb64a
 SHA512 
9c9c0ef89c8f8e43516c052a06395d61c423b53a79553ceccd992bf72872ece44696091c11c816213b93532aac54a476fe87475f4f67baaa87bc50f64e847d48
+DIST rebase-1810.tar.xz 173538148 BLAKE2B 
4630d6a2addbb95e70cff73c8f81552545c81be2893dd9f38d19d8bc2fd7ecf4340441498187b654a05012d4dafbd5ad0634e3281f7aed1ee61618308a2325a5
 SHA512 
641ed61b14970e9804e98abab4e982aeaff378638730964ba162dffacea1c5869e4b1202462f422307d039e1bc6053403c801273f1ca9021c38f29e68a7bfae2

diff --git a/sci-biology/rebase/rebase-1810.ebuild 
b/sci-biology/rebase/rebase-1810.ebuild
new file mode 100644
index 000..e9944bde30f
--- /dev/null
+++ b/sci-biology/rebase/rebase-1810.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com";
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz";
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris 
~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+   if use emboss; then
+   echo; einfo "Indexing Rebase for usage with EMBOSS."
+   mkdir REBASE || die
+   EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+   -protofile proto.${MY_PV} -equivalences \
+   || die "Indexing Rebase failed."
+   echo
+   fi
+}
+
+src_install() {
+   if ! use minimal; then
+   insinto /usr/share/${PN}
+   doins withrefm.${MY_PV} proto.${MY_PV}
+   fi
+   newdoc REBASE.DOC README
+   if use emboss; then
+   insinto /usr/share/EMBOSS/data/REBASE
+   doins REBASE/embossre.{enz,ref,sup}
+   insinto /usr/share/EMBOSS/data
+   doins REBASE/embossre.equ
+   fi
+}



[gentoo-commits] repo/gentoo:master commit in: sys-kernel/aufs-sources/

2018-10-21 Thread Justin Lecher
commit: c959af8524c9fbf7bddead2bb5d354de0af3c377
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Oct 21 07:19:16 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Oct 21 07:19:16 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c959af85

sys-kernel/aufs-sources: Bump to latest aufs, genpatches and linux release

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sys-kernel/aufs-sources/Manifest   | 167 +++--
 .../aufs-sources/aufs-sources-4.14.50.ebuild   |  84 ---
 .../aufs-sources/aufs-sources-4.14.51.ebuild   |  84 ---
 .../aufs-sources/aufs-sources-4.14.53.ebuild   |  84 ---
 ...-4.14.44.ebuild => aufs-sources-4.14.65.ebuild} |   4 +-
 ...-4.14.47.ebuild => aufs-sources-4.14.71.ebuild} |   4 +-
 ...-4.14.48.ebuild => aufs-sources-4.14.72.ebuild} |   4 +-
 9.76-r1.ebuild => aufs-sources-4.14.73.ebuild} |   2 +-
 ...-4.14.49.ebuild => aufs-sources-4.14.74.ebuild} |   4 +-
 ...-4.14.49.ebuild => aufs-sources-4.14.75.ebuild} |   4 +-
 ...-4.14.49.ebuild => aufs-sources-4.14.76.ebuild} |   4 +-
 ...-4.14.49.ebuild => aufs-sources-4.14.77.ebuild} |   4 +-
 ...-4.14.49.ebuild => aufs-sources-4.14.78.ebuild} |   4 +-
 sys-kernel/aufs-sources/aufs-sources-4.17.0.ebuild |  84 ---
 sys-kernel/aufs-sources/aufs-sources-4.17.1.ebuild |  84 ---
 sys-kernel/aufs-sources/aufs-sources-4.17.2.ebuild |  84 ---
 sys-kernel/aufs-sources/aufs-sources-4.17.3.ebuild |  84 ---
 sys-kernel/aufs-sources/aufs-sources-4.17.4.ebuild |  84 ---
 ...-4.14.49.ebuild => aufs-sources-4.18.10.ebuild} |   4 +-
 ...-4.14.49.ebuild => aufs-sources-4.18.11.ebuild} |   4 +-
 ...-4.14.49.ebuild => aufs-sources-4.18.12.ebuild} |   4 +-
 ...-4.14.49.ebuild => aufs-sources-4.18.13.ebuild} |   4 +-
 ...-4.14.49.ebuild => aufs-sources-4.18.14.ebuild} |   4 +-
 ...-4.14.49.ebuild => aufs-sources-4.18.15.ebuild} |   4 +-
 ...-4.16.18.ebuild => aufs-sources-4.18.16.ebuild} |   2 +-
 ...s-4.14.49.ebuild => aufs-sources-4.18.9.ebuild} |   4 +-
 .../aufs-sources/aufs-sources-4.4.111-r1.ebuild|  84 ---
 .../aufs-sources/aufs-sources-4.4.128.ebuild   |  84 ---
 .../aufs-sources/aufs-sources-4.4.136.ebuild   |  84 ---
 .../aufs-sources/aufs-sources-4.4.137.ebuild   |  84 ---
 .../aufs-sources/aufs-sources-4.4.138.ebuild   |  84 ---
 .../aufs-sources/aufs-sources-4.4.87-r1.ebuild |  84 ---
 .../aufs-sources/aufs-sources-4.9.105.ebuild   |  84 ---
 .../aufs-sources/aufs-sources-4.9.106.ebuild   |  84 ---
 .../aufs-sources/aufs-sources-4.9.107.ebuild   |  84 ---
 .../aufs-sources/aufs-sources-4.9.108.ebuild   |  84 ---
 .../aufs-sources/aufs-sources-4.9.109.ebuild   |  84 ---
 .../aufs-sources/aufs-sources-4.9.110.ebuild   |  84 ---
 .../aufs-sources/aufs-sources-4.9.111.ebuild   |  84 ---
 .../aufs-sources/aufs-sources-4.9.49-r1.ebuild |  84 ---
 sys-kernel/aufs-sources/aufs-sources-4.9.72.ebuild |  84 ---
 sys-kernel/aufs-sources/aufs-sources-4.9.85.ebuild |  84 ---
 sys-kernel/aufs-sources/aufs-sources-4.9.95.ebuild |  84 ---
 43 files changed, 87 insertions(+), 2244 deletions(-)

diff --git a/sys-kernel/aufs-sources/Manifest b/sys-kernel/aufs-sources/Manifest
index 7b385e37b7e..21ee02fd747 100644
--- a/sys-kernel/aufs-sources/Manifest
+++ b/sys-kernel/aufs-sources/Manifest
@@ -1,117 +1,60 @@
-DIST aufs-sources-4.14_p20180409.tar.xz 181264 BLAKE2B 
580de640580fcc15c6d7e1de0e480b803aca878d087aee63455674f0a74156849882331805cf70c8df439c8b6ce67b7883930c0f388c8e7ed1f643028ce98140
 SHA512 
b7bbb239d5681479ad822c9bcc28c78bc8e713cd5577192c630bf2363e9dbc1009c05d11fe01668735651f602d111ee59fe0b1c259f56e8485f9cc25b0865b38
-DIST aufs-sources-4.14_p20180611.tar.xz 181208 BLAKE2B 
c915c145092df4608e2ba5a8346328114912c10974561e3c5fa1135a8eb53b04d222d0f0948e7fb15ee376c5d61a098747ca37dfba494061261f32dbdc621a83
 SHA512 
f350cc8d67aa8b99ca7a44f3c665d9f4b5a345dc330ac4e8bf26e4355a033e21d6c04953bffa78e9f8c093131b84a82432b18db020e4b55b0e609692f0dcc217
+DIST aufs-sources-4.14.56+_p20181008.tar.xz 184372 BLAKE2B 
145c9aea8918702ad8eb6a0a76e3a107f168c7136198ac01ffe1372adcfb14387558a71445f1f9e7dc9642ef3c58b78f5e2fccf29931cf7f190abd43156d0c54
 SHA512 
f39b202b3b7c2eab26fae58c034d901258a951d3c63dc864bd7f8c866da5767133eab61eb9c56fe2eeac0f0353cb1d965d5d190ac76cc1d334795891b8246e9c
 DIST aufs-sources-4.14_p20180702.tar.xz 182024 BLAKE2B 
f57a26a6d28b3ca347e2aa96d1b54579c3f195b9020f26ca618f228e061d6d9d2c1d93269a2927753c407b83cae91602cc751a345c20f4f6c08a93928160a1f6
 SHA512 
423e31e290e92dae1cd57e2caabc31ccc2026a027bdaa363d37686b5c0087da5346785ebe0560d5a9cb6def0c019d41734e0ede84a6fe1472ab0581a9d6e

[gentoo-commits] repo/gentoo:master commit in: sys-kernel/aufs-sources/

2018-07-03 Thread Justin Lecher
commit: c03e59939ec55dea10e37f44c79b3c451a278b44
Author: Justin Lecher  gentoo  org>
AuthorDate: Tue Jul  3 20:40:56 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Tue Jul  3 20:40:56 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c03e5993

sys-kernel/aufs-sources: Bump to latest aufs, genpatches and linux release

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sys-kernel/aufs-sources/Manifest   | 48 +++--
 ...-4.16.14.ebuild => aufs-sources-4.14.52.ebuild} |  4 +-
 ...-4.16.11.ebuild => aufs-sources-4.14.53.ebuild} |  4 +-
 .../aufs-sources/aufs-sources-4.16.15.ebuild   | 84 --
 .../aufs-sources/aufs-sources-4.16.16.ebuild   | 84 --
 .../aufs-sources/aufs-sources-4.16.17.ebuild   | 84 --
 ...-4.16.12.ebuild => aufs-sources-4.16.18.ebuild} |  4 +-
 ...s-4.16.13.ebuild => aufs-sources-4.17.3.ebuild} |  4 +-
 ...s-4.16.14.ebuild => aufs-sources-4.17.4.ebuild} |  4 +-
 ...-4.16.14.ebuild => aufs-sources-4.9.110.ebuild} |  4 +-
 ...-4.16.14.ebuild => aufs-sources-4.9.111.ebuild} |  4 +-
 11 files changed, 39 insertions(+), 289 deletions(-)

diff --git a/sys-kernel/aufs-sources/Manifest b/sys-kernel/aufs-sources/Manifest
index 88e12ff0c8a..7b385e37b7e 100644
--- a/sys-kernel/aufs-sources/Manifest
+++ b/sys-kernel/aufs-sources/Manifest
@@ -1,8 +1,9 @@
 DIST aufs-sources-4.14_p20180409.tar.xz 181264 BLAKE2B 
580de640580fcc15c6d7e1de0e480b803aca878d087aee63455674f0a74156849882331805cf70c8df439c8b6ce67b7883930c0f388c8e7ed1f643028ce98140
 SHA512 
b7bbb239d5681479ad822c9bcc28c78bc8e713cd5577192c630bf2363e9dbc1009c05d11fe01668735651f602d111ee59fe0b1c259f56e8485f9cc25b0865b38
 DIST aufs-sources-4.14_p20180611.tar.xz 181208 BLAKE2B 
c915c145092df4608e2ba5a8346328114912c10974561e3c5fa1135a8eb53b04d222d0f0948e7fb15ee376c5d61a098747ca37dfba494061261f32dbdc621a83
 SHA512 
f350cc8d67aa8b99ca7a44f3c665d9f4b5a345dc330ac4e8bf26e4355a033e21d6c04953bffa78e9f8c093131b84a82432b18db020e4b55b0e609692f0dcc217
-DIST aufs-sources-4.16_p20180409.tar.xz 181240 BLAKE2B 
9ffa894a0db452a25d4c538a5b4dae8eb57a54262d13c29c4af499ec6949a0422fe834af24d70740ae08e363757e306d3b499f1f903f8a95667df53009c899e4
 SHA512 
d8422b44c21ab981485e585690bf5fdb7978b13e37ff85fc8314cf0373b1340756b63a84a0884a7d52001c2cbfd94fb6506e798b46284b8a8f6f9209df816c75
-DIST aufs-sources-4.16_p20180611.tar.xz 181220 BLAKE2B 
c38d2aad867bec768bbc433e04adc6a5dcf62887ee953ff62933179703b601822bdcf123f526f81aee4b0e3779c3bc4ea865ede133ffe75b52b508087e728ee5
 SHA512 
cbc0fdf7fdf22392e55bc4b3f97f3dce34eeff55a1d3105e75a2f0066c11e90897cf64e6115d3ecc0e6f43a222fcbc0f963e59e492eb64632650a62ac0a9ff2a
+DIST aufs-sources-4.14_p20180702.tar.xz 182024 BLAKE2B 
f57a26a6d28b3ca347e2aa96d1b54579c3f195b9020f26ca618f228e061d6d9d2c1d93269a2927753c407b83cae91602cc751a345c20f4f6c08a93928160a1f6
 SHA512 
423e31e290e92dae1cd57e2caabc31ccc2026a027bdaa363d37686b5c0087da5346785ebe0560d5a9cb6def0c019d41734e0ede84a6fe1472ab0581a9d6e3c27
+DIST aufs-sources-4.16_p20180702.tar.xz 182028 BLAKE2B 
e6ef948079c59a96a13c3d56ee6a84c30e97a4e30e3d3440e6122bdeedcbe2afd3ebda8e9a10fea1c0ecde8584282f6fbcc961e21c96993bda465e1bd2d79425
 SHA512 
2302d55d63de82fe4926140f049fd427f37b550b24e82558a72adc87eb96f22ec88c459667118898e4b28c6a466e5038fe835fc6ab3a6c83b2fb86499bc3b2dd
 DIST aufs-sources-4.17_p20180611.tar.xz 181272 BLAKE2B 
3e1cd5f0d9ab42dd8fb06f62a68503c6b486724e4bc0df165ab43765ce43957d3df7771e95d6320af7e6957c8a0a61f334f65bc4b830fb88339226d4180fb4c2
 SHA512 
cafddc580e9b73b39efe9197a75d8325d0c52118409684f66b9f0f2a13e3436a75d1f63118132ddf3db58849bb01be1e11412cbebfb28e99fbf37d6e0741f28a
+DIST aufs-sources-4.17_p20180702.tar.xz 181992 BLAKE2B 
9d0193e1db4fa97959b1a2308474c250fad6173ac76c31a70f3b980f44b2ef1da6093da955acfce62876cb19e15d2f1e56f0fa5fa543173b03613ed57577a42b
 SHA512 
805c21bf49c857d66a8b42c889e623d9c779ee466bf06e7cf4719e80e1a2e3a85793aae8ce3266fdaebcc8c962be073c0dfd6581a786924bb8bc225e708176a9
 DIST aufs-sources-4.4_p20170925.tar.xz 171260 BLAKE2B 
c7a49fe6bfe4d2a83143872c32e987633db5c698d0ee3bf5018ac7091e1a421df7974fa129cb093dee52fdb6640827a784be5b5fe55a5b63fcc2815fc1228c8c
 SHA512 
97aed8053f003156bac862af5037844554e65948abc13ab10371eb4e37ace25b22f5787f9bb3d444e60cb598aaa416c2b12198d8842072407aa5f97bb3a8
 DIST aufs-sources-4.4_p20171127.tar.xz 171260 BLAKE2B 
c7a49fe6bfe4d2a83143872c32e987633db5c698d0ee3bf5018ac7091e1a421df7974fa129cb093dee52fdb6640827a784be5b5fe55a5b63fcc2815fc1228c8c
 SHA512 
97aed8053f003156bac862af5037844554e65948abc13ab10371eb4e37ace25b22f5787f9bb3d444e60cb598aaa416c2b12198d8842072407aa5f97bb3a8
 DIST aufs-sources-4.4_p20180409.tar.xz 171260 BLAKE2B 
c7a49fe6bfe4d2a83143872c32e987633db5c698d0ee3bf5018ac7091e1a421df7974fa129cb093dee52fdb6640827a784be5b5fe5

[gentoo-commits] repo/gentoo:master commit in: sys-cluster/ucx/

2018-06-23 Thread Justin Lecher
commit: 3abbba9a1777bc050e67c510c1327f8a378c6e6e
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Jun 23 18:36:09 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Jun 23 18:36:56 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=3abbba9a

sys-cluster/ucx: Version Bump

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sys-cluster/ucx/Manifest |  1 +
 sys-cluster/ucx/ucx-1.3.0.ebuild | 25 +
 2 files changed, 26 insertions(+)

diff --git a/sys-cluster/ucx/Manifest b/sys-cluster/ucx/Manifest
index e0076771f8a..6382831bd8a 100644
--- a/sys-cluster/ucx/Manifest
+++ b/sys-cluster/ucx/Manifest
@@ -1 +1,2 @@
 DIST ucx-1.2.2.tar.gz 1513611 BLAKE2B 
488b9b3cecc2c617b1209036e1342e4378459db6a5e93eab1d88dfe80cb0d9c8013c767413206f0fbd0105557ed89994ab510421068d709101336a7b3d2eac5e
 SHA512 
515c382826310b9aa7179ab19ceb76a881a41e6786514219b7f703c6144fa57ca141bceb3b80523ae1b4e2a4b13e9abcb9df063612b376d894c5cd81cdc00571
+DIST ucx-1.3.0.tar.gz 1707317 BLAKE2B 
740ab240663a26fde8abe631416dae6233febf3c587ba6bb7b27a9cb0aa041540ce71e106bb3c5618a719de66d479055961908b67125df61a4c7696999c0affb
 SHA512 
0a2e32985e0225fc4ad15dbb1c422dba1d5552638e7329d67572924502e61e1a481ce30cde5ccc83c663fb4ec643df83efc08aed164dfbce6cf38d66a16b3e42

diff --git a/sys-cluster/ucx/ucx-1.3.0.ebuild b/sys-cluster/ucx/ucx-1.3.0.ebuild
new file mode 100644
index 000..eb6c279f645
--- /dev/null
+++ b/sys-cluster/ucx/ucx-1.3.0.ebuild
@@ -0,0 +1,25 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+DESCRIPTION="Unified Communication X"
+HOMEPAGE="http://www.openucx.org";
+SRC_URI="https://github.com/openucx/ucx/releases/download/v${PV}/${P}.tar.gz";
+
+SLOT="0"
+LICENSE="BSD"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="+numa +openmp"
+
+RDEPEND="
+   numa? ( sys-process/numactl )
+"
+
+src_configure() {
+   BASE_CFLAGS="" \
+   econf \
+   --disable-compiler-opt \
+   $(use_enable numa) \
+   $(use_enable openmp)
+}



[gentoo-commits] repo/gentoo:master commit in: sys-cluster/ucx/

2018-06-23 Thread Justin Lecher
commit: b55ebbeeeff8e43fe6be587c990d3c662c603128
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Jun 23 17:48:49 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Jun 23 18:36:56 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b55ebbee

sys-cluster/ucx: Fix numa support

Closes: https://bugs.gentoo.org/654432
Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sys-cluster/ucx/metadata.xml  |  3 +++
 sys-cluster/ucx/{ucx-1.2.2.ebuild => ucx-1.2.2-r1.ebuild} | 12 +---
 2 files changed, 12 insertions(+), 3 deletions(-)

diff --git a/sys-cluster/ucx/metadata.xml b/sys-cluster/ucx/metadata.xml
index d11a30befa7..6af00b86c7f 100644
--- a/sys-cluster/ucx/metadata.xml
+++ b/sys-cluster/ucx/metadata.xml
@@ -9,4 +9,7 @@
clus...@gentoo.org
Gentoo Cluster Project

+   
+   Add support for numa memory allocation
+   
 

diff --git a/sys-cluster/ucx/ucx-1.2.2.ebuild 
b/sys-cluster/ucx/ucx-1.2.2-r1.ebuild
similarity index 73%
rename from sys-cluster/ucx/ucx-1.2.2.ebuild
rename to sys-cluster/ucx/ucx-1.2.2-r1.ebuild
index 0b581f7bf56..c3bf36aa735 100644
--- a/sys-cluster/ucx/ucx-1.2.2.ebuild
+++ b/sys-cluster/ucx/ucx-1.2.2-r1.ebuild
@@ -12,12 +12,16 @@ 
SRC_URI="https://github.com/openucx/ucx/releases/download/v${PV}/${P}.tar.gz";
 SLOT="0"
 LICENSE="BSD"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
+IUSE="+numa +openmp"
+
+RDEPEND="
+   numa? ( sys-process/numactl )
+"
 
 src_prepare() {
default
sed \
-   -e '/^BASE_CFLAGS/s:=.*:=:g' \
+   -e '/BASE_CFLAGS=/s:=".*":=:g' \
-i config/m4/compiler.m4 || die
eautoreconf
 }
@@ -25,5 +29,7 @@ src_prepare() {
 src_configure() {
BASE_CFLAGS="" \
econf \
-   --disable-compiler-opt
+   --disable-compiler-opt \
+   $(use_enable numa) \
+   $(use_enable openmp)
 }



[gentoo-commits] proj/sci:master commit in: /

2018-06-21 Thread Justin Lecher
commit: dc0b005bd8af47b278adc1dd8271c6bf3c669f64
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 20:21:29 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 20:21:29 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=dc0b005b

Fix travis deps

Signed-off-by: Justin Lecher  gentoo.org>

 .travis.yml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/.travis.yml b/.travis.yml
index 3841edb5d..3d53c8b53 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -11,7 +11,7 @@ env:
 before_install:
 - sudo apt-get -qq update
 install:
-- pip install "lxml<4.2"
+- pip install lxml PyYAML
 before_script:
 - sudo chmod a+rwX /etc/passwd /etc/group /etc /usr
 - mkdir -p travis-overlay /etc/portage /usr/portage/distfiles
@@ -25,7 +25,7 @@ before_script:
 - echo "portage::250:portage,travis" >> /etc/group
 - wget "https://www.gentoo.org/dtd/metadata.dtd"; -O 
/usr/portage/distfiles/metadata.dtd
 - ln -s $TRAVIS_BUILD_DIR/portage-portage-${PORTAGE_VER}/cnf/repos.conf 
/etc/portage/repos.conf
-- ln -s /usr/portage/profiles/default/linux/amd64/17.0 
/etc/portage/make.profile
+- ln -s /usr/portage/profiles/default/linux/amd64/17.1 
/etc/portage/make.profile
 - cd travis-overlay
 script:
 - ./../spinner.sh "python 
../portage-portage-${PORTAGE_VER}/repoman/bin/repoman full -d"



[gentoo-commits] proj/sci:master commit in: /

2018-06-21 Thread Justin Lecher
commit: 9e54708d1f68fd0ee32d6ddbd6eae025f3eb6b13
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 20:16:19 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 20:16:19 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=9e54708d

Bump portage version

Signed-off-by: Justin Lecher  gentoo.org>

 .travis.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.travis.yml b/.travis.yml
index 7e59eb158..3841edb5d 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -7,7 +7,7 @@ cache: pip
 python:
 - pypy
 env:
-- PORTAGE_VER="2.3.24"
+- PORTAGE_VER="2.3.40"
 before_install:
 - sudo apt-get -qq update
 install:



[gentoo-commits] proj/sci:master commit in: x11-libs/xview/, x11-libs/xview/files/

2018-06-21 Thread Justin Lecher
commit: 1528e0193b7ece28a1b475b4253f1542d994a064
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 20:15:22 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 20:15:22 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=1528e019

drop due to broken deps

Signed-off-by: Justin Lecher  gentoo.org>

 x11-libs/xview/files/xview-3.2-impl-dec.patch |  30 ---
 x11-libs/xview/metadata.xml   |  12 ---
 x11-libs/xview/xview-3.2-r8.ebuild| 118 --
 3 files changed, 160 deletions(-)

diff --git a/x11-libs/xview/files/xview-3.2-impl-dec.patch 
b/x11-libs/xview/files/xview-3.2-impl-dec.patch
deleted file mode 100644
index 0296a9aeb..0
--- a/x11-libs/xview/files/xview-3.2-impl-dec.patch
+++ /dev/null
@@ -1,30 +0,0 @@
- lib/libxview/misc/hashfn.c |1 +
- lib/libxview/win/win_env.c |3 +++
- 2 files changed, 4 insertions(+), 0 deletions(-)
-
-diff --git a/lib/libxview/misc/hashfn.c b/lib/libxview/misc/hashfn.c
-index f127e2b..a7b27b9 100644
 a/lib/libxview/misc/hashfn.c
-+++ b/lib/libxview/misc/hashfn.c
-@@ -17,6 +17,7 @@ static char sccsid[] = "@(#)hashfn.c 20.12 93/06/28";
- #define hashfn_c
- 
- #include 
-+#include 
- 
- /*
-  * hashfn_new_table(size, hash_fn, cmp_fn) -- create a new hash table object
-diff --git a/lib/libxview/win/win_env.c b/lib/libxview/win/win_env.c
-index d8e7fcc..72f1def 100644
 a/lib/libxview/win/win_env.c
-+++ b/lib/libxview/win/win_env.c
-@@ -18,6 +18,9 @@ static char sccsid[] = "@(#)win_env.c 20.16 93/06/28";
- #include 
- #include 
- #include 
-+#include 
-+#include 
-+#include 
- 
- /*
-  * Public routines

diff --git a/x11-libs/xview/metadata.xml b/x11-libs/xview/metadata.xml
deleted file mode 100644
index d9927d9fd..0
--- a/x11-libs/xview/metadata.xml
+++ /dev/null
@@ -1,12 +0,0 @@
-
-http://www.gentoo.org/dtd/metadata.dtd";>
-
-   
-   j...@gentoo.org
-   Justin Lecher
-   
-   
-   s...@gentoo.org
-   Gentoo Science Project
-   
-

diff --git a/x11-libs/xview/xview-3.2-r8.ebuild 
b/x11-libs/xview/xview-3.2-r8.ebuild
deleted file mode 100644
index 6ae307dd0..0
--- a/x11-libs/xview/xview-3.2-r8.ebuild
+++ /dev/null
@@ -1,118 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit eutils toolchain-funcs flag-o-matic multilib
-
-MY_PN="${P}p1.4"
-
-DESCRIPTION="The X Window-System-based Visual/Integrated Environment for 
Workstations"
-HOMEPAGE="http://physionet.caregroup.harvard.edu/physiotools/xview/";
-# We usr the debian tarball so that the debian patches apply
-SRC_URI="
-   mirror://debian/pool/main/x/xview/xview_3.2p1.4.orig.tar.gz
-   mirror://debian/pool/main/x/xview/xview_3.2p1.4-28.1.debian.tar.gz"
-
-LICENSE="XVIEW"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux -*"
-IUSE="static-libs"
-
-RDEPEND="
-   media-fonts/font-bh-75dpi
-   media-fonts/font-sun-misc
-   x11-libs/libXpm
-   x11-misc/xbitmaps
-   x11-proto/xextproto"
-
-DEPEND="${RDEPEND}
-   app-text/rman
-   x11-misc/gccmakedep
-   x11-misc/imake"
-
-S=${WORKDIR}/${MY_PN}
-
-PATCHES=(
-   "${FILESDIR}"/${P}-impl-dec.patch
-   "${WORKDIR}"/debian/patches/{debian-changes-3.2p1.4-26,display_setting}
-)
-
-src_prepare() {
-   default
-
-   append-flags -m32
-   append-ldflags -m32
-
-   # Do not build xgettext and msgfmt since they are provided by the 
gettext
-   # package. Using the programs provided by xview breaks many packages
-   # including vim, grep and binutils.
-   sed -e 's/MSG_UTIL = xgettext msgfmt/#MSG_UTIL = xgettext msgfmt/' \
-   -i util/Imakefile || die "gettext sed failed"
-
-   # (#120910) Look for imake in the right place
-   sed -i -e 's:\/X11::' imake || die "imake sed failed"
-
-   sed -i -e 's:/usr/X11R6:/usr:' config/XView.cf Build-LinuxXView.bash || 
die
-
-   # Nasty hacks to force CC and CFLAGS
-   sed -e "s:^\(IMAKEINCLUDE=.*\)\"$:\1 -DCcCmd=$(tc-getCC)\":" \
-   -e "s:usr/lib/X11/config:usr/$(get_libdir)/X11/config:" \
-   -i Build-LinuxXView.bash || die
-   sed -e "s:\(.*STD_DEFINES =.*\)$:\1 -D_GNU_SOURCE ${CFLAGS}:" \
-   -i config/XView.obj || die
-   sed -e "s:\(.*define LibXViewDefines .*\)$:\1 -D_GNU_SOURCE ${CFLAGS}:" 
\
-   -i config/XView.cf || die
-   sed -e "s:^\(MORECCFLAGS.*\)$:\1 -D_GNU_SOURCE ${CFLAGS}:" \
-   -i clients/olvwm-4.1/Imakefile || die
-   sed -e "s:\(-Wl,-soname\):${LDFLAGS} \1:g" -i config/XView.rul

[gentoo-commits] proj/sci:master commit in: sci-misc/praat/

2018-06-21 Thread Justin Lecher
commit: 5d81bcddc4f674a1d40529ac3aa2ad4a20454b5b
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 19:51:20 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 19:51:20 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=5d81bcdd

sci-misc/praat: Clean old

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sci-misc/praat/praat-5.4.19.ebuild | 36 
 1 file changed, 36 deletions(-)

diff --git a/sci-misc/praat/praat-5.4.19.ebuild 
b/sci-misc/praat/praat-5.4.19.ebuild
deleted file mode 100644
index 347fe25a8..0
--- a/sci-misc/praat/praat-5.4.19.ebuild
+++ /dev/null
@@ -1,36 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-DESCRIPTION="Speech analysis and synthesis"
-HOMEPAGE="http://www.fon.hum.uva.nl/praat/ https://github.com/praat/praat";
-SRC_URI="https://github.com/${PN}/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz"
-
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-LICENSE="GPL-2"
-SLOT="0"
-
-DEPEND="
-   x11-libs/libXmu
-   x11-libs/libXt
-   x11-libs/libX11
-   x11-libs/libICE
-   x11-libs/libXext
-   x11-libs/libSM
-   x11-libs/libXp
-   x11-libs/motif:0="
-RDEPEND="${DEPEND}"
-
-src_prepare() {
-   # TODO: following line should be updated for non-linux etc. builds
-   # (Flammie does not have testing equipment)
-   cp "${S}"/makefiles/makefile.defs.linux.alsa "${S}"/makefile.defs
-}
-
-src_install() {
-   dobin ${PN}
-   insinto /usr/share/${PN}
-   doins -r test
-}



[gentoo-commits] proj/sci:master commit in: sci-chemistry/jana2000/, sci-chemistry/jana2000/files/

2018-06-21 Thread Justin Lecher
commit: a5556ce47be840decc8edff37df21c71ea052409
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 19:49:48 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 19:49:48 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=a5556ce4

drop due to broken deps

Signed-off-by: Justin Lecher  gentoo.org>

 sci-chemistry/jana2000/files/20071218-g77.diff | 63 --
 .../jana2000/files/20071218-gfortran.diff  | 63 --
 sci-chemistry/jana2000/jana2000-20071218.ebuild| 59 
 sci-chemistry/jana2000/metadata.xml|  8 ---
 4 files changed, 193 deletions(-)

diff --git a/sci-chemistry/jana2000/files/20071218-g77.diff 
b/sci-chemistry/jana2000/files/20071218-g77.diff
deleted file mode 100644
index 3b055a879..0
--- a/sci-chemistry/jana2000/files/20071218-g77.diff
+++ /dev/null
@@ -1,63 +0,0 @@
 Makefile   2007-11-15 11:29:30.0 +0100
-+++ Makefile.g77   2009-07-21 00:13:17.0 +0200
-@@ -427,28 +427,28 @@
- ##  start of editable section 
- #
- #   ## The command calling Fortran compiler (without options)
--# FCOM = g77
-+ FCOM = g77
- #   ## Fortran compiler options
--# FOPTS = -O2 $(WARN)
-+ FOPTS = $(CFLAGS) $(WARN)
- #   ## path to the C include files
--# INCLUDE =
-+ INCLUDE =
- #   ## C compiler options
--# COPTS = -O2 $(WARN) $(INCLUDE)
-+ COPTS = $(CFLAGS) $(WARN) $(INCLUDE)
- #   ## libraries to link
--# LINKLIBS = -L/usr/X11/lib -L/usr/X11R5/lib -L/usr/X11R6/lib \
--#-L/usr/X11R6/lib64 -lX11
-+ LINKLIBS = -L/usr/X11/lib -L/usr/X11R5/lib -L/usr/X11R6/lib \
-+-L/usr/X11R6/lib64 -lX11
- #   ## RANLIB is not used, but cannot be empty
--# RANLIB = echo
-+ RANLIB = echo
- #   ## Fortran compiler adds underscore to each module
--# UNDERSCORES = define
-+ UNDERSCORES = define
- #   ## Fortran compiler changes the source code to lowercase
--# LOWER_CASE = define
-+ LOWER_CASE = define
- #
--# FORCE =  # please don't change this setting
--# PREPARE = prepare# please don't change this setting
--# PROG = jana2000  # please don't change this setting
--# CN11= a# # please don't change this setting
--# INFO = LINUX - g77 compiler # please don't change this setting
-+ FORCE =  # please don't change this setting
-+ PREPARE = prepare# please don't change this setting
-+ PROG = jana2000  # please don't change this setting
-+ CN11= a# # please don't change this setting
-+ INFO = LINUX - g77 compiler # please don't change this setting
- # 
- # #  end of editable section 
- 
-@@ -814,7 +814,7 @@
-cp $(SPECIDIR)/MainUnit.c .; \
-$(CCOM) $(COPTS) -c MainUnit.c
- MAKEEXE =  $(EXESPOL); \
--   $(FCOM) $(FOPTS) -o $$NAME MainUnit.o $$NAME.o $(LIBS) 
$(LINKLIBS); \
-+   $(FCOM) $(FOPTS) $(LDFLAGS) -o $$NAME MainUnit.o $$NAME.o $(LIBS) 
$(LINKLIBS); \
-$(RMFILES); \
-chmod 755 $$NAME
- MAKEJ2000 =  echo ' '; \
-@@ -837,7 +837,7 @@
-($(WRITE_FHEAD)) > $(FHEAD); \
-cp $(SPECIDIR)/MainUnit.c $(SPECIDIR)/*.h $(FGPATH)/*.h .; \
-$(CCOM) $(COPTS) -c MainUnit.c; \
--   $(FCOM) $(FOPTS) -o $$NAME MainUnit.o $(OBJLIST) \
-+   $(FCOM) $(FOPTS) $(LDFLAGS) -o $$NAME MainUnit.o $(OBJLIST) \
-  $(LIBS) $(LINKLIBS); \
-$(RMFILES); \
-chmod 755 $$NAME; echo ' '

diff --git a/sci-chemistry/jana2000/files/20071218-gfortran.diff 
b/sci-chemistry/jana2000/files/20071218-gfortran.diff
deleted file mode 100644
index d6cf590fa..0
--- a/sci-chemistry/jana2000/files/20071218-gfortran.diff
+++ /dev/null
@@ -1,63 +0,0 @@
 Makefile   2007-11-15 11:29:30.0 +0100
-+++ Makefile.gfortran  2009-07-21 00:12:38.0 +0200
-@@ -463,28 +463,28 @@
- #   ## The command calling Fortran compiler (without options)
- #   ## gfortran is a successor of g77. It is part of gcc starting
- #   ## from version 4
--# FCOM = gfortran
-+ FCOM = gfortran
- #   ## Fortran compiler options
--# FOPTS = -O2 $(WARN)
-+ FOPTS = $(CFLAGS) $(WARN)
- #   ## path to the C include files
--# INCLUDE =
-+ INCLUDE =
- #   ## C compiler options
--# COPTS = -O2 $(WARN) $(INCLUDE)
-+ COPTS = $(CFLAGS) $(WARN) $(INCLUDE)
- #   ## libraries to link
--# LINKLIBS = -L/usr/X11/lib -L/usr/X11R5/lib -L/usr/X11R6/lib \
--#-L/usr/X11R6/lib64 -lX11
-+ LINKLIBS = -L/usr/X11/lib -L/usr/X11R5/lib -L/usr/X11R6/lib \
-+-L/usr/X11R6/lib64 -lX11
- #   ## RANLIB is not used, but cannot be empty
--# RANLIB = echo
-+ RANLIB = echo
- #   ## Fortran compiler adds underscore to each module
--# UNDERSCORES = define
-+ UNDERSCORES = define
- #   ## Fortran compiler changes the source code to lowercase
--# LOWER_CASE = define
-+ LOWER_CASE = define
- #
--# FORCE =  

[gentoo-commits] proj/sci:master commit in: sys-cluster/ovis/files/, sys-cluster/ovis/

2018-06-21 Thread Justin Lecher
commit: 6d3ee38d636cfbb529eb4be136e124e2b8d4f350
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 19:52:06 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 19:52:06 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=6d3ee38d

drop due to broken deps

Signed-off-by: Justin Lecher  gentoo.org>

 sys-cluster/ovis/files/ovis-directories.patch | 96 ---
 sys-cluster/ovis/metadata.xml | 17 -
 sys-cluster/ovis/ovis-3.0.1.ebuild| 61 -
 3 files changed, 174 deletions(-)

diff --git a/sys-cluster/ovis/files/ovis-directories.patch 
b/sys-cluster/ovis/files/ovis-directories.patch
deleted file mode 100644
index 4374048e1..0
--- a/sys-cluster/ovis/files/ovis-directories.patch
+++ /dev/null
@@ -1,96 +0,0 @@
-diff -uNr original//CMakeLists.txt patched//CMakeLists.txt
 original//CMakeLists.txt   2010-11-22 20:52:47.0 +0100
-+++ patched//CMakeLists.txt2012-04-21 22:51:48.819917913 +0200
-@@ -37,8 +37,13 @@
- #-
- # Set install locations.
- 
-+if ( OVIS_INSTALL_INCLUDE_DIR )
-+  set( ovis_install_inc_suffix ${OVIS_INSTALL_INCLUDE_DIR} )
-+else ( OVIS_INSTALL_INCLUDE_DIR )
-+  set( ovis_install_inc_suffix include )
-+endif ( OVIS_INSTALL_INCLUDE_DIR )
-+
- set( ovis_install_bin_suffix bin )
--set( ovis_install_inc_suffix include )
- set( ovis_install_bin_dir ${CMAKE_INSTALL_PREFIX}/${ovis_install_bin_suffix} )
- set( ovis_install_inc_dir ${CMAKE_INSTALL_PREFIX}/${ovis_install_inc_suffix} )
- 
-@@ -48,15 +53,21 @@
-   CHECK_TYPE_SIZE( "void*" CMAKE_SIZEOF_VOID_P BUILTIN_TYPES_ONLY )
- endif ( NOT CMAKE_SIZEOF_VOID_P )
- message( STATUS "Pointers are ${CMAKE_SIZEOF_VOID_P} bytes" )
--if ( CMAKE_SYSTEM_NAME MATCHES "Linux" OR CMAKE_SYSTEM_NAME MATCHES "Solaris" 
OR CMAKE_SYSTEM_NAME MATCHES "Irix" )
--  if ( CMAKE_SIZEOF_VOID_P EQUAL 8 )
--set( ovis_install_lib_suffix lib64 )
--  else ( CMAKE_SIZEOF_VOID_P EQUAL 8 )
-+
-+if ( NOT OVIS_INSTALL_LIB_DIR )
-+  if ( CMAKE_SYSTEM_NAME MATCHES "Linux" OR CMAKE_SYSTEM_NAME MATCHES 
"Solaris" OR CMAKE_SYSTEM_NAME MATCHES "Irix" )
-+if ( CMAKE_SIZEOF_VOID_P EQUAL 8 )
-+  set( ovis_install_lib_suffix lib64 )
-+else ( CMAKE_SIZEOF_VOID_P EQUAL 8 )
-+  set( ovis_install_lib_suffix lib )
-+endif ( CMAKE_SIZEOF_VOID_P EQUAL 8 )
-+  else ( CMAKE_SYSTEM_NAME MATCHES "Linux" OR CMAKE_SYSTEM_NAME MATCHES 
"Solaris" OR CMAKE_SYSTEM_NAME MATCHES "Irix" )
- set( ovis_install_lib_suffix lib )
--  endif ( CMAKE_SIZEOF_VOID_P EQUAL 8 )
--else ( CMAKE_SYSTEM_NAME MATCHES "Linux" OR CMAKE_SYSTEM_NAME MATCHES 
"Solaris" OR CMAKE_SYSTEM_NAME MATCHES "Irix" )
--  set( ovis_install_lib_suffix lib )
--endif ( CMAKE_SYSTEM_NAME MATCHES "Linux" OR CMAKE_SYSTEM_NAME MATCHES 
"Solaris" OR CMAKE_SYSTEM_NAME MATCHES "Irix" )
-+  endif ( CMAKE_SYSTEM_NAME MATCHES "Linux" OR CMAKE_SYSTEM_NAME MATCHES 
"Solaris" OR CMAKE_SYSTEM_NAME MATCHES "Irix" )
-+else ( NOT OVIS_INSTALL_LIB_DIR )
-+  set( ovis_install_lib_suffix ${OVIS_INSTALL_LIB_DIR} )
-+endif ( NOT OVIS_INSTALL_LIB_DIR )
-+
- set( ovis_install_lib_dir ${CMAKE_INSTALL_PREFIX}/${ovis_install_lib_suffix} )
- 
- #-
-diff -uNr original//util/alglib/CMakeLists.txt 
patched//util/alglib/CMakeLists.txt
 original//util/alglib/CMakeLists.txt   2010-11-22 20:52:49.0 
+0100
-+++ patched//util/alglib/CMakeLists.txt2012-04-22 01:29:33.059752714 
+0200
-@@ -48,11 +48,7 @@
-   set( alglib_install_bin_dir ${CMAKE_INSTALL_PREFIX}/bin )
- endif ( VTK_INSTALL_BIN_DIR_CM24 )
- 
--if ( VTK_INSTALL_LIB_DIR_CM24 )
--  set( alglib_install_lib_dir ${VTK_INSTALL_LIB_DIR_CM24} )
--else ( VTK_INSTALL_LIB_DIR_CM24 )
--  set( alglib_install_lib_dir ${CMAKE_INSTALL_PREFIX}/lib )
--endif ( VTK_INSTALL_LIB_DIR_CM24 )
-+set( alglib_install_lib_dir ${ovis_install_lib_suffix} )
- 
- if ( VTK_INSTALL_INCLUDE_DIR_CM24 )
-   set( alglib_install_inc_dir ${VTK_INSTALL_INCLUDE_DIR_CM24} )
-diff -uNr original//util/CMakeLists.txt patched//util/CMakeLists.txt
 original//util/CMakeLists.txt  2010-11-22 20:52:47.0 +0100
-+++ patched//util/CMakeLists.txt   2012-04-21 23:10:41.389898144 +0200
-@@ -65,9 +65,9 @@
- # Send VTK executables to the ParaView LIBRARY directory (not a mistake).
- # Send VTK include files to the ParaView include directory
- # Send VTK libraries to the ParaView library directory.
--set(VTK_INSTALL_BIN_DIR "/${ovis_install_bin_suffix}")
--set(VTK_INSTALL_INCLUDE_DIR "/${ovis_install_inc_suffix}")
--set(VTK_INSTALL_LIB_DIR "/${ovis_install_lib_suffix}")
-+set(VTK_INSTALL_BIN_D

[gentoo-commits] proj/sci:master commit in: sci-biology/sequin/

2018-06-21 Thread Justin Lecher
commit: 9033dfe17250cc1c92331c027492744f2be44115
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 19:49:06 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 19:49:06 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=9033dfe1

drop due to broken deps

Signed-off-by: Justin Lecher  gentoo.org>

 sci-biology/sequin/metadata.xml   |  8 --
 sci-biology/sequin/sequin-20121202.ebuild | 44 ---
 2 files changed, 52 deletions(-)

diff --git a/sci-biology/sequin/metadata.xml b/sci-biology/sequin/metadata.xml
deleted file mode 100644
index 8417d1580..0
--- a/sci-biology/sequin/metadata.xml
+++ /dev/null
@@ -1,8 +0,0 @@
-
-http://www.gentoo.org/dtd/metadata.dtd";>
-
-   
-   sci-biol...@gentoo.org
-   Gentoo Biology Project
-   
-

diff --git a/sci-biology/sequin/sequin-20121202.ebuild 
b/sci-biology/sequin/sequin-20121202.ebuild
deleted file mode 100644
index 53e54d81b..0
--- a/sci-biology/sequin/sequin-20121202.ebuild
+++ /dev/null
@@ -1,44 +0,0 @@
-# Copyright 1999-2017 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-inherit eutils
-
-DESCRIPTION="Facilitate submission of data to the GenBank, EMBL, and DDBJ 
sequence databases"
-HOMEPAGE="http://www.ncbi.nlm.nih.gov/Sequin/";
-SRC_URI="
-   amd64? ( ftp://ftp.ncbi.nih.gov/sequin/sequin.linux-x86_64.tar.gz -> 
${P}-x86_64.tar.gz )
-   x86? ( ftp://ftp.ncbi.nih.gov/sequin/sequin.linux.tar.gz -> 
${P}-x86.tar.gz )"
-#  amd64? ( 
ftp://ftp.ncbi.nih.gov/sequin/old/${PV}/sequin.linux-x86_64.tar.gz -> 
${P}-x86_64.tar.gz )
-#  x86? ( ftp://ftp.ncbi.nih.gov/sequin/old/${PV}/sequin.linux-x86.tar.gz 
-> ${P}-x86.tar.gz )"
-
-LICENSE="all-rights-reserved"
-SLOT="0"
-KEYWORDS="~amd64 ~x86"
-IUSE=""
-
-DEPEND=""
-RDEPEND="
-   x11-libs/libXmu
-   x11-libs/libXp
-"
-
-S="${WORKDIR}"
-
-QA_PREBUILT="/opt/.*"
-
-src_install() {
-   dohtml -r *htm images
-   rm -rf *htm images || die
-
-   insinto /opt/${PN}
-   doins -r *
-
-   exeinto /opt/${PN}
-   doexe sequin
-
-   dosym ../${PN}/sequin /opt/bin/sequin
-
-   make_desktop_entry sequin Sequin
-}



[gentoo-commits] proj/sci:master commit in: sci-mathematics/yorick/files/, sci-mathematics/yorick/

2018-06-21 Thread Justin Lecher
commit: 4dac509f2bcbef580ffb153388f0d742f50c9607
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 19:50:06 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 19:50:06 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=4dac509f

drop due to broken deps

Signed-off-by: Justin Lecher  gentoo.org>

 sci-mathematics/yorick/files/yorick-2.1.06.patch | 69 
 sci-mathematics/yorick/metadata.xml  | 20 ---
 sci-mathematics/yorick/yorick-2.1.06.ebuild  | 63 --
 3 files changed, 152 deletions(-)

diff --git a/sci-mathematics/yorick/files/yorick-2.1.06.patch 
b/sci-mathematics/yorick/files/yorick-2.1.06.patch
deleted file mode 100644
index 33dc25d17..0
--- a/sci-mathematics/yorick/files/yorick-2.1.06.patch
+++ /dev/null
@@ -1,69 +0,0 @@
-diff -U2 --recursive yorick-2.1.orig/Makefile yorick-2.1/Makefile
 yorick-2.1.orig/Makefile   2005-11-14 03:01:56.0 +0600
-+++ yorick-2.1/Makefile2008-03-19 09:34:30.0 +0600
-@@ -84,15 +84,16 @@
- Y_BINDIR=
- Y_DOCDIR=
-+Y_INCDIR=
- install: yorexe gistexe docs
--  ./instally.sh +both "$(INSTALL_ROOT)" "$(Y_BINDIR)" "$(Y_DOCDIR)"
-+  ./instally.sh +both "$(INSTALL_ROOT)" "$(Y_BINDIR)" "$(Y_DOCDIR)" 
"$(Y_INCDIR)"
- 
- install1: yorexe gistexe
--  ./instally.sh +home "$(INSTALL_ROOT)" "$(Y_BINDIR)" "$(Y_DOCDIR)"
-+  ./instally.sh +home "$(INSTALL_ROOT)" "$(Y_BINDIR)" "$(Y_DOCDIR)" 
"$(Y_INCDIR)"
- 
- uninstall:
--  ./instally.sh -both "$(INSTALL_ROOT)" "$(Y_BINDIR)" "$(Y_DOCDIR)"
-+  ./instally.sh -both "$(INSTALL_ROOT)" "$(Y_BINDIR)" "$(Y_DOCDIR)" 
"$(Y_INCDIR)"
- 
- uninstall1:
--  ./instally.sh -home "$(INSTALL_ROOT)" "$(Y_BINDIR)" "$(Y_DOCDIR)"
-+  ./instally.sh -home "$(INSTALL_ROOT)" "$(Y_BINDIR)" "$(Y_DOCDIR)" 
"$(Y_INCDIR)"
- 
- dist: siteclean
-diff -U2 --recursive yorick-2.1.orig/instally.sh yorick-2.1/instally.sh
 yorick-2.1.orig/instally.sh2005-09-19 05:03:40.0 +0700
-+++ yorick-2.1/instally.sh 2008-03-19 09:40:19.0 +0600
-@@ -41,4 +41,10 @@
- fi
- 
-+if test -n "$5"; then
-+  Y_INCDIR="$5"
-+else
-+  Y_INCDIR="$Y_HOME/include"
-+fi
-+
- EXE_SFX=`grep '^EXE_SFX=' Make.cfg | sed -e 's/^EXE_SFX=//'`
- 
-@@ -49,7 +55,9 @@
- touch ./junk.tst
- if test -f "$Y_HOME"/junk.tst; then
--  for sub in include lib bin; do rm -rf "$Y_HOME"/$sub; done
-+  for sub in lib bin; do rm -rf "$Y_HOME"/$sub; done
-+  rm -rf "$Y_INCDIR"
-   rm -f "$Y_HOME"/Make* "$Y_HOME"/install*
- else
-+  rm -rf "$Y_INCDIR"
-   rm -rf "$Y_HOME"
- fi
-@@ -81,5 +89,5 @@
- $YNSTALL $YGP "$Y_HOME"
- $YNSTALL $YGP "$Y_HOME/i-start"
--$YNSTALL $YGP "$Y_HOME/include"
-+$YNSTALL $YGP "$Y_INCDIR"
- $YNSTALL $YGP "$Y_HOME/lib"
- if test -n "$3"; then
-@@ -95,10 +103,10 @@
-   hconfig=play/unix/config.h
- fi
--$YNSTALL $YGP $hconfig play/*.h gist/*.h yorick/*.h "$Y_HOME/include"
-+$YNSTALL $YGP $hconfig play/*.h gist/*.h yorick/*.h "$Y_INCDIR"
- touch ./junk.tst
- if test -f "$Y_HOME/junk.tst"; then
-   :
- else
--  $YNSTALL $YGP LICENSE Make.cfg Makepkg Makeexe Makedll "$Y_HOME"
-+  $YNSTALL $YGP Make.cfg Makepkg Makeexe Makedll "$Y_HOME"
- fi
- rm -f ./junk.tst

diff --git a/sci-mathematics/yorick/metadata.xml 
b/sci-mathematics/yorick/metadata.xml
deleted file mode 100644
index aa9387970..0
--- a/sci-mathematics/yorick/metadata.xml
+++ /dev/null
@@ -1,20 +0,0 @@
-
-http://www.gentoo.org/dtd/metadata.dtd";>
-
-   
-   a.g.gro...@inp.nsk.su
-   Andrey Grozin
-   
-   
-   sci-mathemat...@gentoo.org
-   Gentoo Mathematics Project
-   
-   
-Yorick is a language for scientific computing and rapid prototyping, similar to
-matlab. It can easily call C functions and libraries, has multidimensional 
arrays
-and built-in plot functions.
-
-   
-   yorick
-   
-

diff --git a/sci-mathematics/yorick/yorick-2.1.06.ebuild 
b/sci-mathematics/yorick/yorick-2.1.06.ebuild
deleted file mode 100644
index 691a82f42..0
--- a/sci-mathematics/yorick/yorick-2.1.06.ebuild
+++ /dev/null
@@ -1,63 +0,0 @@
-# Copyright 1999-2014 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-inherit elisp-common eutils multilib versionator
-
-DESCRIPTION="Language for scientific computing and rapid prototyping"
-HOMEPAGE="http://yorick.sourceforg

[gentoo-commits] proj/sci:master commit in: sci-libs/blas-reference/

2018-06-21 Thread Justin Lecher
commit: 4b32011a72001b46fb34ebb04dcc2bee0fa295f0
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 19:12:51 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 19:12:51 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=4b32011a

sci-libs/blas-reference: Run cmake-utils_src_prepare

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sci-libs/blas-reference/blas-reference-.ebuild | 1 +
 1 file changed, 1 insertion(+)

diff --git a/sci-libs/blas-reference/blas-reference-.ebuild 
b/sci-libs/blas-reference/blas-reference-.ebuild
index 12e50de88..71b81ca97 100644
--- a/sci-libs/blas-reference/blas-reference-.ebuild
+++ b/sci-libs/blas-reference/blas-reference-.ebuild
@@ -31,6 +31,7 @@ DEPEND="${RDEPEND}
 S="${WORKDIR}/${LPN}-${LPV}"
 
 src_prepare() {
+   cmake-utils_src_prepare
# rename library to avoid collision with other blas implementations
# ${LIBNAME} and ${PROFNAME} are not defined here, they are in single
# quotes in the following seds.  They are later set by defining cmake



[gentoo-commits] proj/sci:master commit in: dev-lang/terra/

2018-06-21 Thread Justin Lecher
commit: 7157aeaf5196b89db42b5ad32a1f5f8ea5b30c56
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 18:50:00 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 18:50:00 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=7157aeaf

dev-lang/terra: Fix deps

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 dev-lang/terra/terra-2015.03.12.ebuild | 7 +++
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/dev-lang/terra/terra-2015.03.12.ebuild 
b/dev-lang/terra/terra-2015.03.12.ebuild
index ca3bb80df..99421ed5d 100644
--- a/dev-lang/terra/terra-2015.03.12.ebuild
+++ b/dev-lang/terra/terra-2015.03.12.ebuild
@@ -1,4 +1,4 @@
-# Copyright 1999-2017 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
 EAPI=6
@@ -17,7 +17,7 @@ KEYWORDS="~amd64"
 IUSE="test"
 
 DEPEND="
-   sys-devel/clang:0=
+   sys-devel/clang:=
dev-lang/luajit:2"
 RDEPEND="${DEPEND}"
 
@@ -32,6 +32,5 @@ src_install() {
dobin terra
dolib.so libterra.so
dodoc README.md
-   cd include || die
-   doheader terra.h *.t
+   doheader include/{terra.h,*.t}
 }



[gentoo-commits] proj/sci:master commit in: sci-libs/lapacke-reference/

2018-06-21 Thread Justin Lecher
commit: ba3b62401d51add9c65539eb284b8f472eb6360b
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 19:46:53 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 19:46:53 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=ba3b6240

sci-libs/lapacke-reference: Bump EAPI

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 .../lapacke-reference-3.8.0.ebuild | 99 --
 .../lapacke-reference-.ebuild  | 10 +--
 2 files changed, 5 insertions(+), 104 deletions(-)

diff --git a/sci-libs/lapacke-reference/lapacke-reference-3.8.0.ebuild 
b/sci-libs/lapacke-reference/lapacke-reference-3.8.0.ebuild
deleted file mode 100644
index d6136e4ef..0
--- a/sci-libs/lapacke-reference/lapacke-reference-3.8.0.ebuild
+++ /dev/null
@@ -1,99 +0,0 @@
-# Copyright 1999-2018 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-FORTRAN_NEEDED=test
-
-inherit alternatives-2 cmake-utils eutils fortran-2 toolchain-funcs
-
-MYP=lapack-${PV}
-
-DESCRIPTION="C Interface to LAPACK"
-HOMEPAGE="http://www.netlib.org/lapack/";
-SRC_URI="http://www.netlib.org/lapack/${MYP}.tar.gz";
-
-LICENSE="BSD"
-SLOT="0"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="+deprecated static-libs test tmg xblas"
-
-RDEPEND="
-   virtual/blas
-   virtual/lapack
-   tmg? ( sci-libs/tmglib )
-   xblas? ( sci-libs/xblas )"
-DEPEND="${RDEPEND}
-   virtual/pkgconfig"
-
-S="${WORKDIR}/${MYP}"
-
-src_prepare() {
-   cmake-utils_src_prepare
-
-   # rename libraries to avoid collision with other lapacke
-   sed -i \
-   -e 's:BINARY_DIR}/lapacke.pc:BINARY_DIR}/reflapacke.pc:' \
-   -e '/export/s:lapacke:reflapacke:g' \
-   -e '/ALL_TARGETS/s:lapacke):reflapacke):' \
-   -e '/LAPACK_LIBRARIES/s:lapacke:reflapacke:g' \
-   LAPACKE/CMakeLists.txt \
-   CMakeLists.txt || die
-   sed -i \
-   -e '/librar/s:(lapacke:(reflapacke:g' \
-   LAPACKE/CMakeLists.txt || die
-   sed -i \
-   -e '/librar/s:lapacke:reflapacke:g' \
-   LAPACKE/example/CMakeLists.txt || die
-   local tmgpc; use tmg && tmgpc=" -ltmglib"
-   sed -i \
-   -e "s:-llapacke:-lreflapacke${tmgpc}:g" \
-   LAPACKE/lapacke.pc.in || die
-   use static-libs && mkdir "${WORKDIR}/${PN}_static"
-}
-
-src_configure() {
-   lapack_configure() {
-   local mycmakeargs=(
-   -DUSE_OPTIMIZED_BLAS=ON
-   -DUSE_OPTIMIZED_LAPACK=ON
-   -DLAPACKE=ON
-   -DBLAS_LIBRARIES="$($(tc-getPKG_CONFIG) --libs blas)"
-   -DLAPACK_LIBRARIES="$($(tc-getPKG_CONFIG) --libs 
lapack)"
-   -DLAPACKE_WITH_TMG=$(usex tmg)
-   -DBUILD_TESTING=$(usex test)
-   -DUSE_XBLAS=$(usex xblas)
-   -DBUILD_DEPRECATED=$(usex deprecated)
-   $@
-   )
-   cmake-utils_src_configure
-   }
-
-   lapack_configure -DBUILD_SHARED_LIBS=ON -DBUILD_STATIC_LIBS=OFF
-   use static-libs && \
-   BUILD_DIR="${WORKDIR}/${PN}_static" lapack_configure \
-   -DBUILD_SHARED_LIBS=OFF -DBUILD_STATIC_LIBS=ON
-}
-
-src_compile() {
-   use test && cmake-utils_src_compile -C TESTING/MATGEN
-   cmake-utils_src_compile -C LAPACKE
-   use static-libs \
-   && BUILD_DIR="${WORKDIR}/${PN}_static" cmake-utils_src_compile 
-C LAPACKE
-}
-
-src_test() {
-   pushd "${BUILD_DIR}/LAPACKE" > /dev/null || die
-   local ctestargs
-   [[ -n ${TEST_VERBOSE} ]] && ctestargs="--extra-verbose 
--output-on-failure"
-   ctest ${ctestargs} || die
-   popd > /dev/null || die
-}
-
-src_install() {
-   cmake-utils_src_install -C LAPACKE
-   use static-libs \
-   && BUILD_DIR="${WORKDIR}/${PN}_static" cmake-utils_src_install 
-C LAPACKE
-   alternatives_for lapacke reference 0 \
-   /usr/$(get_libdir)/pkgconfig/lapacke.pc reflapacke.pc
-}

diff --git a/sci-libs/lapacke-reference/lapacke-reference-.ebuild 
b/sci-libs/lapacke-reference/lapacke-reference-.ebuild
index 168f2d7a6..87462c46a 100644
--- a/sci-libs/lapacke-reference/lapacke-reference-.ebuild
+++ b/sci-libs/lapacke-reference/lapacke-reference-.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distribu

[gentoo-commits] proj/sci:master commit in: dev-java/netcdf/

2018-06-21 Thread Justin Lecher
commit: f94982a2d92d58ea08f06ca2bb02496c73023ac0
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 18:47:45 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 18:47:45 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=f94982a2

dev-java/netcdf: Fix deps

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 dev-java/netcdf/netcdf-4.2.ebuild | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/dev-java/netcdf/netcdf-4.2.ebuild 
b/dev-java/netcdf/netcdf-4.2.ebuild
index c44f5d9b6..1c9c9c42c 100644
--- a/dev-java/netcdf/netcdf-4.2.ebuild
+++ b/dev-java/netcdf/netcdf-4.2.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=6
 
 JAVA_PKG_IUSE="doc examples source test"
 inherit eutils java-pkg-2 java-ant-2
@@ -27,7 +27,7 @@ CDEPEND="
dev-java/joda-time
dev-java/log4j
dev-java/slf4j-api
-   dev-libs/protobuf[java]"
+   dev-java/protobuf-java"
 
 RDEPEND="${CDEPEND}
>=virtual/jre-1.5"



[gentoo-commits] proj/sci:master commit in: sci-libs/lapack-reference/

2018-06-21 Thread Justin Lecher
commit: d5dd592716fd81b3d93d57bf5c7b415b055d647f
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 19:06:01 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 19:06:01 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=d5dd5927

sci-libs/lapack-reference: Run cmake-utils_src_prepare

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sci-libs/lapack-reference/lapack-reference-3.8.0-r100.ebuild | 2 +-
 sci-libs/lapack-reference/lapack-reference-.ebuild   | 2 ++
 2 files changed, 3 insertions(+), 1 deletion(-)

diff --git a/sci-libs/lapack-reference/lapack-reference-3.8.0-r100.ebuild 
b/sci-libs/lapack-reference/lapack-reference-3.8.0-r100.ebuild
index e5adb3ced..32b0cd5db 100644
--- a/sci-libs/lapack-reference/lapack-reference-3.8.0-r100.ebuild
+++ b/sci-libs/lapack-reference/lapack-reference-3.8.0-r100.ebuild
@@ -35,7 +35,7 @@ S="${WORKDIR}/${MYP}"
 src_prepare() {
numeric-int64_ensure_blas_int_support
 
-   default
+   cmake-utils_src_prepare
 
# rename library to avoid collision with other lapack implementations
# ${PROFNAME}, ${LIBNAME} and ${BLAS_REQUIRES} are not defined here, 
they

diff --git a/sci-libs/lapack-reference/lapack-reference-.ebuild 
b/sci-libs/lapack-reference/lapack-reference-.ebuild
index 9404e65c3..a22d2d722 100644
--- a/sci-libs/lapack-reference/lapack-reference-.ebuild
+++ b/sci-libs/lapack-reference/lapack-reference-.ebuild
@@ -40,6 +40,8 @@ S="${WORKDIR}/${MYP}"
 src_prepare() {
numeric-int64_ensure_blas_int_support
 
+   cmake-utils_src_prepare
+
# rename library to avoid collision with other lapack implementations
# ${PROFNAME}, ${LIBNAME} and ${BLAS_REQUIRES} are not defined here, 
they
# are in single quotes in the following seds.  They are set later by



[gentoo-commits] proj/sci:master commit in: sci-libs/blas-reference/

2018-06-21 Thread Justin Lecher
commit: c652be510dabd08a202e0c96ec0647b01133db5d
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 18:56:14 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 18:56:14 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=c652be51

sci-libs/blas-reference: Version Bump

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 .../blas-reference-20171112-r100.ebuild| 109 +
 1 file changed, 109 insertions(+)

diff --git a/sci-libs/blas-reference/blas-reference-20171112-r100.ebuild 
b/sci-libs/blas-reference/blas-reference-20171112-r100.ebuild
new file mode 100644
index 0..9ed341c06
--- /dev/null
+++ b/sci-libs/blas-reference/blas-reference-20171112-r100.ebuild
@@ -0,0 +1,109 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+NUMERIC_MODULE_NAME="refblas"
+
+inherit alternatives-2 cmake-utils eutils fortran-2 numeric-int64-multibuild 
python-any-r1 toolchain-funcs
+
+LPN=lapack
+LPV=3.8.0
+
+DESCRIPTION="Reference implementation of BLAS"
+HOMEPAGE="http://www.netlib.org/lapack/";
+SRC_URI="http://www.netlib.org/${LPN}/${LPN}-${LPV}.tar.gz";
+
+LICENSE="BSD"
+SLOT="0/${LPV}"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="static-libs test"
+
+REQUIRED_USE="test? ( ${PYTHON_REQUIRED_USE} )"
+
+RDEPEND=""
+DEPEND="${RDEPEND}
+   test? ( ${PYTHON_DEPS} )
+   virtual/pkgconfig"
+
+S="${WORKDIR}/${LPN}-${LPV}"
+
+src_prepare() {
+   default
+
+   # rename library to avoid collision with other blas implementations
+   # ${LIBNAME} and ${PROFNAME} are not defined here, they are in single
+   # quotes in the following seds.  They are later set by defining cmake
+   # variables with -DPROFNAME etc in src_configure
+   sed -i \
+   -e 's:\([^xc]\)blas:\1${LIBNAME}:g' \
+   -e '/PROPERTIES/s:blas:${LIBNAME}:g' \
+   CMakeLists.txt \
+   BLAS/SRC/CMakeLists.txt || die
+   sed -i \
+   -e '/Name: /s:blas:@PROFNAME@:' \
+   -e 's:-lblas:-l@LIBNAME@:g' \
+BLAS/blas.pc.in || die
+   sed -i \
+   -e 's:blas):${LIBNAME}):' \
+   BLAS/TESTING/CMakeLists.txt || die
+   sed -i \
+   -e 's:BINARY_DIR}/blas:BINARY_DIR}/${PROFNAME}:' \
+   BLAS/CMakeLists.txt || die
+}
+
+src_configure() {
+   blas_configure() {
+   local FCFLAGS="${FCFLAGS}"
+   append-fflags $($(tc-getPKG_CONFIG) --cflags ${blas_profname})
+   append-fflags $(get_abi_CFLAGS)
+   append-fflags $(numeric-int64_get_fortran_int64_abi_fflags)
+
+   local profname=$(numeric-int64_get_module_name)
+   local libname="${profname//-/_}"
+
+   local mycmakeargs=(
+   -Wno-dev
+   -DPROFNAME="${profname}"
+   -DLIBNAME="${libname}"
+   -DUSE_OPTIMIZED_BLAS=OFF
+   -DCMAKE_Fortran_FLAGS="${FCFLAGS}"
+   
-DLAPACK_PKGCONFIG_FFLAGS="$(numeric-int64_get_fortran_int64_abi_fflags)"
+   -DBUILD_TESTING="$(usex test)"
+   )
+   if $(numeric-int64_is_static_build); then
+   mycmakeargs+=(
+   -DBUILD_SHARED_LIBS=OFF
+   -DBUILD_STATIC_LIBS=ON
+   )
+   else
+   mycmakeargs+=(
+   -DBUILD_SHARED_LIBS=ON
+   -DBUILD_STATIC_LIBS=OFF
+   )
+   fi
+   cmake-utils_src_configure
+   }
+   numeric-int64-multibuild_foreach_all_abi_variants blas_configure
+}
+
+src_compile() {
+   local each target_dirs=( BLAS )
+   use test && target_dirs+=( TESTING )
+   for each in ${target_dirs[@]}; do
+   numeric-int64-multibuild_foreach_all_abi_variants \
+   cmake-utils_src_compile -C ${each}
+   done
+
+}
+
+src_test() {
+   numeric-int64-multibuild_foreach_all_abi_variants cmake-utils_src_test
+}
+
+src_install() {
+   numeric-int64-multibuild_foreach_all_abi_variants 
cmake-utils_src_install -C BLAS
+   numeric-int64-multibuild_install_alternative blas reference
+}



[gentoo-commits] proj/sci:master commit in: sci-libs/lapacke-reference/

2018-06-21 Thread Justin Lecher
commit: b16a86110abce01cacb4e537c6559f8df01ab9a8
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 19:20:49 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 19:20:49 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=b16a8611

sci-libs/lapacke-reference: Version Bump

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 .../lapacke-reference-3.8.0.ebuild | 99 ++
 1 file changed, 99 insertions(+)

diff --git a/sci-libs/lapacke-reference/lapacke-reference-3.8.0.ebuild 
b/sci-libs/lapacke-reference/lapacke-reference-3.8.0.ebuild
new file mode 100644
index 0..d6136e4ef
--- /dev/null
+++ b/sci-libs/lapacke-reference/lapacke-reference-3.8.0.ebuild
@@ -0,0 +1,99 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+FORTRAN_NEEDED=test
+
+inherit alternatives-2 cmake-utils eutils fortran-2 toolchain-funcs
+
+MYP=lapack-${PV}
+
+DESCRIPTION="C Interface to LAPACK"
+HOMEPAGE="http://www.netlib.org/lapack/";
+SRC_URI="http://www.netlib.org/lapack/${MYP}.tar.gz";
+
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="+deprecated static-libs test tmg xblas"
+
+RDEPEND="
+   virtual/blas
+   virtual/lapack
+   tmg? ( sci-libs/tmglib )
+   xblas? ( sci-libs/xblas )"
+DEPEND="${RDEPEND}
+   virtual/pkgconfig"
+
+S="${WORKDIR}/${MYP}"
+
+src_prepare() {
+   cmake-utils_src_prepare
+
+   # rename libraries to avoid collision with other lapacke
+   sed -i \
+   -e 's:BINARY_DIR}/lapacke.pc:BINARY_DIR}/reflapacke.pc:' \
+   -e '/export/s:lapacke:reflapacke:g' \
+   -e '/ALL_TARGETS/s:lapacke):reflapacke):' \
+   -e '/LAPACK_LIBRARIES/s:lapacke:reflapacke:g' \
+   LAPACKE/CMakeLists.txt \
+   CMakeLists.txt || die
+   sed -i \
+   -e '/librar/s:(lapacke:(reflapacke:g' \
+   LAPACKE/CMakeLists.txt || die
+   sed -i \
+   -e '/librar/s:lapacke:reflapacke:g' \
+   LAPACKE/example/CMakeLists.txt || die
+   local tmgpc; use tmg && tmgpc=" -ltmglib"
+   sed -i \
+   -e "s:-llapacke:-lreflapacke${tmgpc}:g" \
+   LAPACKE/lapacke.pc.in || die
+   use static-libs && mkdir "${WORKDIR}/${PN}_static"
+}
+
+src_configure() {
+   lapack_configure() {
+   local mycmakeargs=(
+   -DUSE_OPTIMIZED_BLAS=ON
+   -DUSE_OPTIMIZED_LAPACK=ON
+   -DLAPACKE=ON
+   -DBLAS_LIBRARIES="$($(tc-getPKG_CONFIG) --libs blas)"
+   -DLAPACK_LIBRARIES="$($(tc-getPKG_CONFIG) --libs 
lapack)"
+   -DLAPACKE_WITH_TMG=$(usex tmg)
+   -DBUILD_TESTING=$(usex test)
+   -DUSE_XBLAS=$(usex xblas)
+   -DBUILD_DEPRECATED=$(usex deprecated)
+   $@
+   )
+   cmake-utils_src_configure
+   }
+
+   lapack_configure -DBUILD_SHARED_LIBS=ON -DBUILD_STATIC_LIBS=OFF
+   use static-libs && \
+   BUILD_DIR="${WORKDIR}/${PN}_static" lapack_configure \
+   -DBUILD_SHARED_LIBS=OFF -DBUILD_STATIC_LIBS=ON
+}
+
+src_compile() {
+   use test && cmake-utils_src_compile -C TESTING/MATGEN
+   cmake-utils_src_compile -C LAPACKE
+   use static-libs \
+   && BUILD_DIR="${WORKDIR}/${PN}_static" cmake-utils_src_compile 
-C LAPACKE
+}
+
+src_test() {
+   pushd "${BUILD_DIR}/LAPACKE" > /dev/null || die
+   local ctestargs
+   [[ -n ${TEST_VERBOSE} ]] && ctestargs="--extra-verbose 
--output-on-failure"
+   ctest ${ctestargs} || die
+   popd > /dev/null || die
+}
+
+src_install() {
+   cmake-utils_src_install -C LAPACKE
+   use static-libs \
+   && BUILD_DIR="${WORKDIR}/${PN}_static" cmake-utils_src_install 
-C LAPACKE
+   alternatives_for lapacke reference 0 \
+   /usr/$(get_libdir)/pkgconfig/lapacke.pc reflapacke.pc
+}



[gentoo-commits] proj/sci:master commit in: sci-libs/blas-reference/

2018-06-21 Thread Justin Lecher
commit: d4e0b24332115287401bb5b5715cc5c7c3ee1a65
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 19:04:42 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 19:04:42 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=d4e0b243

sci-libs/blas-reference: Run cmake-utils_src_prepare

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sci-libs/blas-reference/blas-reference-20171112-r100.ebuild | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/sci-libs/blas-reference/blas-reference-20171112-r100.ebuild 
b/sci-libs/blas-reference/blas-reference-20171112-r100.ebuild
index 9ed341c06..72bcfd5f3 100644
--- a/sci-libs/blas-reference/blas-reference-20171112-r100.ebuild
+++ b/sci-libs/blas-reference/blas-reference-20171112-r100.ebuild
@@ -31,7 +31,7 @@ DEPEND="${RDEPEND}
 S="${WORKDIR}/${LPN}-${LPV}"
 
 src_prepare() {
-   default
+   cmake-utils_src_prepare
 
# rename library to avoid collision with other blas implementations
# ${LIBNAME} and ${PROFNAME} are not defined here, they are in single



[gentoo-commits] proj/sci:master commit in: sci-libs/blas-reference/

2018-06-21 Thread Justin Lecher
commit: ebed5ad81567b39f170ed4bd47972bf3928d4653
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 18:51:44 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 18:51:44 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=ebed5ad8

sci-libs/blas-reference: Clean old

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 .../blas-reference-20131116-r100.ebuild| 106 ---
 .../blas-reference-20151113-r100.ebuild| 112 -
 .../blas-reference/blas-reference-.ebuild  |   6 +-
 3 files changed, 3 insertions(+), 221 deletions(-)

diff --git a/sci-libs/blas-reference/blas-reference-20131116-r100.ebuild 
b/sci-libs/blas-reference/blas-reference-20131116-r100.ebuild
deleted file mode 100644
index 7927c9503..0
--- a/sci-libs/blas-reference/blas-reference-20131116-r100.ebuild
+++ /dev/null
@@ -1,106 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-NUMERIC_MODULE_NAME="refblas"
-
-inherit alternatives-2 cmake-utils fortran-2 numeric-int64-multibuild 
python-any-r1 toolchain-funcs
-
-LPN=lapack
-LPV=3.5.0
-
-DESCRIPTION="Reference implementation of BLAS"
-HOMEPAGE="http://www.netlib.org/lapack/";
-SRC_URI="http://www.netlib.org/${LPN}/${LPN}-${LPV}.tgz";
-
-LICENSE="BSD"
-SLOT="0/${LPV}"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="static-libs test"
-
-REQUIRED_USE="test? ( ${PYTHON_REQUIRED_USE} )"
-
-RDEPEND=""
-DEPEND="${RDEPEND}
-   test? ( ${PYTHON_DEPS} )
-   virtual/pkgconfig"
-
-S="${WORKDIR}/${LPN}-${LPV}"
-
-src_prepare() {
-   # rename library to avoid collision with other blas implementations
-   # ${LIBNAME} and ${PROFNAME} are not defined here, they are in single
-   # quotes in the following seds.  They are later set by defining cmake
-   # variables with -DPROFNAME etc in src_configure
-   sed -i \
-   -e 's:\([^xc]\)blas:\1${LIBNAME}:g' \
-   CMakeLists.txt \
-   BLAS/SRC/CMakeLists.txt || die
-   sed -i \
-   -e '/Name: /s:blas:${PROFNAME}:' \
-   -e 's:-lblas:-l${LIBNAME}:g' \
-BLAS/blas.pc.in || die
-   sed -i \
-   -e 's:blas):${LIBNAME}):' \
-   BLAS/TESTING/CMakeLists.txt || die
-   sed -i \
-   -e 's:BINARY_DIR}/blas:BINARY_DIR}/${PROFNAME}:' \
-   BLAS/CMakeLists.txt || die
-}
-
-src_configure() {
-   blas_configure() {
-   local FCFLAGS="${FCFLAGS}"
-   append-fflags $($(tc-getPKG_CONFIG) --cflags ${blas_profname})
-   append-fflags $(get_abi_CFLAGS)
-   append-fflags $(numeric-int64_get_fortran_int64_abi_fflags)
-
-   local profname=$(numeric-int64_get_module_name)
-   local libname="${profname//-/_}"
-
-   local mycmakeargs=(
-   -Wno-dev
-   -DPROFNAME="${profname}"
-   -DLIBNAME="${libname}"
-   -DUSE_OPTIMIZED_BLAS=OFF
-   -DCMAKE_Fortran_FLAGS="${FCFLAGS}"
-   
-DLAPACK_PKGCONFIG_FFLAGS="$(numeric-int64_get_fortran_int64_abi_fflags)"
-   $(cmake-utils_use_build test TESTING)
-   )
-   if $(numeric-int64_is_static_build); then
-   mycmakeargs+=(
-   -DBUILD_SHARED_LIBS=OFF
-   -DBUILD_STATIC_LIBS=ON
-   )
-   else
-   mycmakeargs+=(
-   -DBUILD_SHARED_LIBS=ON
-   -DBUILD_STATIC_LIBS=OFF
-   )
-   fi
-   cmake-utils_src_configure
-   }
-   numeric-int64-multibuild_foreach_all_abi_variants blas_configure
-}
-
-src_compile() {
-   local each target_dirs=( BLAS )
-   use test && target_dirs+=( TESTING )
-   for each in ${target_dirs[@]}; do
-   numeric-int64-multibuild_foreach_all_abi_variants \
-   cmake-utils_src_compile -C ${each}
-   done
-
-}
-
-src_test() {
-   numeric-int64-multibuild_foreach_all_abi_variants cmake-utils_src_test
-}
-
-src_install() {
-   numeric-int64-multibuild_foreach_all_abi_variants 
cmake-utils_src_install -C BLAS
-   numeric-int64-multibuild_install_alternative blas reference
-}

diff --git a/sci-libs/blas-reference/blas-reference-20151113-r100.ebuild 
b/sci-libs/blas-reference/blas-reference-20151113-r100.ebuild
deleted file mode 100

[gentoo-commits] proj/sci:master commit in: sci-libs/lapack-reference/

2018-06-21 Thread Justin Lecher
commit: 9a8650d9abf6246ed47f13f79cc125754f038f2d
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 18:39:24 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 18:39:24 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=9a8650d9

sci-libs/lapack-reference: Bump EAPI

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sci-libs/lapack-reference/lapack-reference-.ebuild | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/sci-libs/lapack-reference/lapack-reference-.ebuild 
b/sci-libs/lapack-reference/lapack-reference-.ebuild
index b9742cce2..9404e65c3 100644
--- a/sci-libs/lapack-reference/lapack-reference-.ebuild
+++ b/sci-libs/lapack-reference/lapack-reference-.ebuild
@@ -1,7 +1,7 @@
-# Copyright 1999-2015 Gentoo Foundation
+# Copyright 1999-2018 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
 
-EAPI=5
+EAPI=6
 
 PYTHON_COMPAT=( python2_7 )
 



[gentoo-commits] proj/sci:master commit in: sci-libs/lapack-reference/

2018-06-21 Thread Justin Lecher
commit: 2a6f2f23e7e8acd665cf02df87d3b6063d94d9fb
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 18:36:51 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 18:36:51 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=2a6f2f23

sci-libs/lapack-reference: Clean old

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 .../lapack-reference-3.5.0-r100.ebuild | 117 ---
 .../lapack-reference-3.6.0-r100.ebuild | 124 -
 .../lapack-reference-3.6.1-r100.ebuild | 124 -
 3 files changed, 365 deletions(-)

diff --git a/sci-libs/lapack-reference/lapack-reference-3.5.0-r100.ebuild 
b/sci-libs/lapack-reference/lapack-reference-3.5.0-r100.ebuild
deleted file mode 100644
index e41622ff5..0
--- a/sci-libs/lapack-reference/lapack-reference-3.5.0-r100.ebuild
+++ /dev/null
@@ -1,117 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=5
-
-PYTHON_COMPAT=( python2_7 )
-
-NUMERIC_MODULE_NAME="reflapack"
-
-inherit alternatives-2 cmake-utils fortran-2 numeric-int64-multibuild 
python-any-r1
-
-MY_PN=lapack
-MYP=${MY_PN}-${PV}
-
-DESCRIPTION="Reference implementation of LAPACK"
-HOMEPAGE="http://www.netlib.org/lapack/";
-SRC_URI="http://www.netlib.org/lapack/${MYP}.tgz";
-
-LICENSE="BSD"
-SLOT="0/${PV}"
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-IUSE="static-libs test xblas"
-
-REQUIRED_USE="test? ( ${PYTHON_REQUIRED_USE} )"
-
-RDEPEND="
-   >=virtual/blas-2.1-r3[int64?,${MULTILIB_USEDEP}]
-   xblas? ( sci-libs/xblas[fortran,int64?] )"
-DEPEND="${RDEPEND}
-   virtual/pkgconfig
-   test? ( ${PYTHON_DEPS} )"
-
-S="${WORKDIR}/${MYP}"
-
-src_prepare() {
-   numeric-int64_ensure_blas_int_support
-
-   # rename library to avoid collision with other lapack implementations
-   # ${PROFNAME}, ${LIBNAME} and ${BLAS_REQUIRES} are not defined here, 
they
-   # are in single quotes in the following seds.  They are set later by
-   # defining a cmake variables with -DPROFNAME etc in src_configure.
-   sed -i \
-   -e 's:BINARY_DIR}/lapack.pc:BINARY_DIR}/${PROFNAME}.pc:' \
-   -e '/ALL_TARGETS/s:lapack):${LIBNAME}):' \
-   -e '/LAPACK_LIBRARIES/s:lapack:${LIBNAME}:g' \
-   CMakeLists.txt || die
-   sed -i \
-   -e 's:(lapack:(${LIBNAME}:g' \
-   SRC/CMakeLists.txt || die
-   sed -i \
-   -e '/Name: /s:lapack:${PROFNAME}:' \
-   -e 's:-llapack:-l${LIBNAME}:g' \
-   -e '/Requires: 
/s:blas:${BLAS_REQUIRES}\nFflags=${LAPACK_PKGCONFIG_FFLAGS}:' \
-   lapack.pc.in || die
-   # some string does not get passed properly
-   sed -i \
-   -e '/lapack_testing.py/d' \
-   CTestCustom.cmake.in || die
-   # separate ebuild to tmglib
-   sed -i \
-   -e '/lapack_install_library(tmglib)/d' \
-   TESTING/MATGEN/CMakeLists.txt || die
-}
-
-src_configure() {
-   lapack_configure() {
-   local profname=$(numeric-int64_get_module_name)
-   local libname="${profname//-/_}"
-   local blas_profname=$(numeric-int64_get_blas_alternative)
-   local xblas_profname=$(numeric-int64_get_xblas_alternative)
-   local xblas_libname="${xblas_profname//-/_}"
-   local blas_requires="${blas_profname}"
-   use xblas && \
-   blas_requires+=" ${xblas_profname}"
-   local mycmakeargs=(
-   -DPROFNAME="${profname}"
-   -DBLAS_REQUIRES="${blas_requires}"
-   -DLIBNAME="${libname}"
-   -DUSE_OPTIMIZED_BLAS=ON
-   -DBLAS_LIBRARIES="$($(tc-getPKG_CONFIG) --libs 
${blas_profname})"
-   $(cmake-utils_use_build test TESTING)
-   $(cmake-utils_use_use xblas XBLAS)
-   -DCMAKE_C_FLAGS="$($(tc-getPKG_CONFIG) --cflags 
${blas_profname}) ${CFLAGS}"
-   -DCMAKE_CXX_FLAGS="$($(tc-getPKG_CONFIG) --cflags 
${blas_profname}) ${CXXFLAGS}"
-   -DCMAKE_Fortran_FLAGS="$($(tc-getPKG_CONFIG) --cflags 
${blas_profname}) $(get_abi_CFLAGS) 
$(numeric-int64_get_fortran_int64_abi_fflags) ${FCFLAGS}"
-   
-DLAPACK_PKGCONFIG_FFLAGS="$(numeric-int64_get_fortran_int64_abi_fflags)"
-   )
- 

[gentoo-commits] proj/sci:master commit in: licenses/

2018-06-21 Thread Justin Lecher
commit: b39f2a023a6f53c599025f492a86fd1387072728
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 18:43:01 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 18:43:01 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=b39f2a02

licenses: Add missing licenses

Signed-off-by: Justin Lecher  gentoo.org>

 licenses/mpich  | 39 +
 licenses/staden | 76 +
 2 files changed, 115 insertions(+)

diff --git a/licenses/mpich b/licenses/mpich
new file mode 100644
index 0..a9216d495
--- /dev/null
+++ b/licenses/mpich
@@ -0,0 +1,39 @@
+
+ COPYRIGHT
+
+The following is a notice of limited availability of the code, and disclaimer
+which must be included in the prologue of the code and in all source listings
+of the code.
+
+Copyright Notice
+ + 2002 University of Chicago
+
+Permission is hereby granted to use, reproduce, prepare derivative works, and
+to redistribute to others.  This software was authored by:
+
+Mathematics and Computer Science Division
+Argonne National Laboratory, Argonne IL 60439
+
+(and)
+
+Department of Computer Science
+University of Illinois at Urbana-Champaign
+
+
+ GOVERNMENT LICENSE
+
+Portions of this material resulted from work developed under a U.S.
+Government Contract and are subject to the following license: the Government
+is granted for itself and others acting on its behalf a paid-up, nonexclusive,
+irrevocable worldwide license in this computer software to reproduce, prepare
+derivative works, and perform publicly and display publicly.
+
+ DISCLAIMER
+
+This computer code material was prepared, in part, as an account of work
+sponsored by an agency of the United States Government.  Neither the United
+States, nor the University of Chicago, nor any of their employees, makes any
+warranty express or implied, or assumes any legal liability or responsibility
+for the accuracy, completeness, or usefulness of any information, apparatus,
+product, or process disclosed, or represents that its use would not infringe
+privately owned rights.

diff --git a/licenses/staden b/licenses/staden
new file mode 100644
index 0..f2e77291a
--- /dev/null
+++ b/licenses/staden
@@ -0,0 +1,76 @@
+=
+
+The Staden Package
+
+Copyright (c) 2003 MEDICAL RESEARCH COUNCIL
+All rights reserved
+
+Redistribution and use in source and binary forms, with or without 
+modification, are permitted provided that the following conditions are met:
+
+   . Redistributions of source code must retain the above copyright notice, 
+this list of conditions and the following disclaimer.
+
+   . Redistributions in binary form must reproduce the above copyright notice, 
+this list of conditions and the following disclaimer in the documentation 
+and/or other materials provided with the distribution.
+
+   . Neither the name of the MEDICAL RESEARCH COUNCIL, THE LABORATORY OF 
+MOLECULAR BIOLOGY nor the names of its contributors may be used to endorse or 
+promote products derived from this software without specific prior written 
+permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" 
AND 
+ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED 
+WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE 
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE 
FOR 
+ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES 
+(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; 
+LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON 
+ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT 
+(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS 
+SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
+
+=
+
+Portions of this code have been modified by the Wellcome Trust Sanger
+Institute (Genome Research Limited). In some cases entirely new
+programs and/or source files have been created. These are licenced
+under essentially the same conditions as the MRC code (with just name
+changes).
+
+The following licence only applies to files bearing the Genome
+Research Limited copyright notice:
+
+
+
+Copyright (c) 2004 GENOME RESEARCH LIMITED
+All rights reserved
+
+Redistribution and use in source and binary forms, with or without 
+modification, are permitted provided that the following conditions are met:
+
+   . Redistributions of source code must retain the above copyright notice, 
+this list of conditions and the following disclaimer.
+
+   . Redistributions in binary form must reproduce the above copyright not

[gentoo-commits] proj/sci:master commit in: sci-libs/lapack-reference/

2018-06-21 Thread Justin Lecher
commit: c4d9ac48f18eab5d44da15e8e8b36eca9d1353de
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 18:36:01 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 18:36:01 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=c4d9ac48

sci-libs/lapack-reference: Version Bump

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 .../lapack-reference-3.8.0-r100.ebuild | 120 +
 1 file changed, 120 insertions(+)

diff --git a/sci-libs/lapack-reference/lapack-reference-3.8.0-r100.ebuild 
b/sci-libs/lapack-reference/lapack-reference-3.8.0-r100.ebuild
new file mode 100644
index 0..e5adb3ced
--- /dev/null
+++ b/sci-libs/lapack-reference/lapack-reference-3.8.0-r100.ebuild
@@ -0,0 +1,120 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+PYTHON_COMPAT=( python2_7 )
+
+NUMERIC_MODULE_NAME="reflapack"
+
+inherit alternatives-2 cmake-utils eutils fortran-2 numeric-int64-multibuild 
python-any-r1
+
+MY_PN=lapack
+MYP=${MY_PN}-${PV}
+
+DESCRIPTION="Reference implementation of LAPACK"
+HOMEPAGE="http://www.netlib.org/lapack/";
+SRC_URI="http://www.netlib.org/lapack/${MYP}.tar.gz";
+
+LICENSE="BSD"
+SLOT="0/${PV}"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="+deprecated static-libs test xblas"
+
+REQUIRED_USE="test? ( ${PYTHON_REQUIRED_USE} )"
+
+RDEPEND="
+   >=virtual/blas-2.1-r3[int64?,${MULTILIB_USEDEP}]
+   xblas? ( sci-libs/xblas[fortran,int64?] )"
+DEPEND="${RDEPEND}
+   virtual/pkgconfig
+   test? ( ${PYTHON_DEPS} )"
+
+S="${WORKDIR}/${MYP}"
+
+src_prepare() {
+   numeric-int64_ensure_blas_int_support
+
+   default
+
+   # rename library to avoid collision with other lapack implementations
+   # ${PROFNAME}, ${LIBNAME} and ${BLAS_REQUIRES} are not defined here, 
they
+   # are in single quotes in the following seds.  They are set later by
+   # defining a cmake variables with -DPROFNAME etc in src_configure.
+   sed \
+   -e 's:BINARY_DIR}/lapack.pc:BINARY_DIR}/${PROFNAME}.pc:' \
+   -e '/ALL_TARGETS/s:lapack):${LIBNAME}):' \
+   -e '/LAPACK_LIBRARIES/s:lapack:${LIBNAME}:g' \
+   -i CMakeLists.txt || die
+   sed -i \
+   -e 's:(lapack:(${LIBNAME}:g' \
+   -e '/PROPERTIES/s:lapack:${LIBNAME}:g' \
+   SRC/CMakeLists.txt || die
+   sed -i \
+   -e '/Name: /s:lapack:@PROFNAME@:' \
+   -e 's:-llapack:-l@LIBNAME@:g' \
+   -e '/Requires: /s:blas:@BLAS_REQUIRES@\nFflags\: 
${LAPACK_PKGCONFIG_FFLAGS}:' \
+   lapack.pc.in || die
+   # some string does not get passed properly
+   sed -i \
+   -e '/lapack_testing.py/d' \
+   CTestCustom.cmake.in || die
+   # separate ebuild to tmglib
+   sed -i \
+   -e '/lapack_install_library(tmglib)/d' \
+   TESTING/MATGEN/CMakeLists.txt || die
+}
+
+src_configure() {
+   lapack_configure() {
+   local profname=$(numeric-int64_get_module_name)
+   local libname="${profname//-/_}"
+   local blas_profname=$(numeric-int64_get_blas_alternative)
+   local xblas_profname=$(numeric-int64_get_xblas_alternative)
+   local xblas_libname="${xblas_profname//-/_}"
+   local blas_requires="${blas_profname}"
+   use xblas && \
+   blas_requires+=" ${xblas_profname}"
+   local mycmakeargs=(
+   -DPROFNAME="${profname}"
+   -DBLAS_REQUIRES="${blas_requires}"
+   -DLIBNAME="${libname}"
+   -DUSE_OPTIMIZED_BLAS=ON
+   -DBUILD_TESTING="$(usex test)"
+   -DUSE_XBLAS="$(usex xblas)"
+   -DBUILD_DEPRECATED="$(usex deprecated)"
+   -DCMAKE_C_FLAGS="$($(tc-getPKG_CONFIG) --cflags 
${blas_profname}) ${CFLAGS}"
+   -DCMAKE_CXX_FLAGS="$($(tc-getPKG_CONFIG) --cflags 
${blas_profname}) ${CXXFLAGS}"
+   -DCMAKE_Fortran_FLAGS="$($(tc-getPKG_CONFIG) --cflags 
${blas_profname}) $(get_abi_CFLAGS) 
$(numeric-int64_get_fortran_int64_abi_fflags) ${FCFLAGS}"
+   
-DLAPACK_PKGCONFIG_FFLAGS="$(numeric-int64_get_fortran_int64_abi_fflags)"
+   )
+   use xblas && \
+   mycmakeargs+=( 
-DXBLAS_LIBRARY:FILEPATH="${ER

[gentoo-commits] proj/sci:master commit in: app-admin/eselect/files/

2018-06-21 Thread Justin Lecher
commit: 9e088d37a7bff06c0aededc98439456de3193659
Author: Justin Lecher  gentoo  org>
AuthorDate: Thu Jun 21 18:20:06 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Thu Jun 21 18:26:56 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=9e088d37

app-admin/eselect: Fix eselect patch

Fixes #870

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9
Signed-off-by: Justin Lecher  gentoo.org>

 .../files/eselect-1.4.13-alternatives.patch| 203 ++---
 1 file changed, 101 insertions(+), 102 deletions(-)

diff --git a/app-admin/eselect/files/eselect-1.4.13-alternatives.patch 
b/app-admin/eselect/files/eselect-1.4.13-alternatives.patch
index 0dbc50ef7..c47887fe6 100644
--- a/app-admin/eselect/files/eselect-1.4.13-alternatives.patch
+++ b/app-admin/eselect/files/eselect-1.4.13-alternatives.patch
@@ -5,11 +5,8 @@
  libs/alternatives.bash.in| 316 
  modules/Makefile.am  |   1 +
  modules/alternatives.eselect | 178 ++
- modules/modules.eselect  | 282 ++
- 8 files changed, 1340 insertions(+), 105 deletions(-)
- create mode 100644 libs/alternatives-common.bash.in
- create mode 100644 libs/alternatives.bash.in
- create mode 100644 modules/alternatives.eselect
+ modules/modules.eselect  | 288 ++
+ 8 files changed, 1343 insertions(+), 108 deletions(-)
 
 diff --git a/bin/Makefile.am b/bin/Makefile.am
 index 20902c1..ad08867 100644
@@ -254,7 +251,7 @@ index 6ebd08e..c19f173 100644
@$(dosed) $< > $@
 diff --git a/libs/alternatives-common.bash.in 
b/libs/alternatives-common.bash.in
 new file mode 100644
-index 000..79b6eb5
+index 000..8753b89
 --- /dev/null
 +++ b/libs/alternatives-common.bash.in
 @@ -0,0 +1,510 @@
@@ -280,7 +277,7 @@ index 000..79b6eb5
 +inherit config output path-manipulation tests
 +
 +: "${ALTERNATIVESDIR_ROOTLESS:=@sysconfdir@/env.d/alternatives}"
-+: "${ALTERNATIVESDIR_ROOT:=${EROOT%/}}"
++: "${ALTERNATIVESDIR_ROOT:=${ROOT%/}}"
 +ALTERNATIVESDIR="${ALTERNATIVESDIR_ROOT}${ALTERNATIVESDIR_ROOTLESS}"
 +
 +get_current_provider() {
@@ -550,7 +547,7 @@ index 000..79b6eb5
 +  elif [[ ! -d "${provider_dir}" ]]; then
 +  die "${provider_dir} exists but is a file"
 +  else
-+  die "${provider_dir} already present. You need ot remove it 
before adding it again"
++  die "${provider_dir} already present. You need to remove it 
before adding it again"
 +  fi
 +
 +  # Make sure importance is a signed integer
@@ -1311,47 +1308,7 @@ index 5bc78ca..23c1e59 100644
  do_list() {
 -  local only_names path file module name desc
 -  local -a extra_modules
-+local path file module name desc group groups Extra_modules
-+
-+write_list_start "Built-in modules:"
-+write_kv_list_entry "help"  "Display a help message"
-+write_kv_list_entry "usage" "Display a usage message"
-+write_kv_list_entry "version"   "Display version information"
-+write_kv_list_entry "print-modules" "Print eselect modules"
-+write_kv_list_entry "print-actions" "Print actions for a given module"
-+write_kv_list_entry "print-options" "Print options for a given action"
-+
-+for path in "${ESELECT_MODULES_PATH[@]}" ; do
-+[[ -d ${path} ]] || continue
-+for file in ${path}/*.eselect ; do
-+[[ -f ${file} ]] || continue
-+group=$(load_config "${file}" ESELECT_MODULE_GROUP)
-+if [[ -n ${group} ]]; then
-+has ${group} ${groups} || groups+=" ${group}"
-+declare ${group}_modules+=" ${file}"
-+else
-+Extra_modules+=" ${file}"
-+fi
-+done
-+done
-+
-+for group in ${groups} Extra; do
-+local m
-+m="${group}_modules"
-+if [[ -n ${!m} ]] ; then
-+echo
-+write_list_start "${group} modules:"
-+for module in ${!m}; do
-+name=${module##*/}
-+name=${name%%.eselect}
-+desc=$(load_config "${module}" DESCRIPTION)
-+desc=${desc:-No description available}
-+write_kv_list_entry "${name}" "${desc}"
-+done
-+fi
-+done
-+}
- 
+-
 -  if [[ ${1#--} = only-names ]]; then
 -  only_names=1
 -  shift
@@ -1365,8 +1322,7 @@ index 5bc78ca..23c1e59 100644
 -  extra_modules=( "${extra_modules[@]}" "${file}" )
 -  done
 -  done
-+### group actio

[gentoo-commits] repo/gentoo:master commit in: sys-cluster/slurm/

2018-06-10 Thread Justin Lecher
commit: 01804741ea7cc0ea726cb60e6edb439be45efb82
Author: Justin Lecher  gentoo  org>
AuthorDate: Sun Jun 10 09:40:45 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sun Jun 10 09:41:07 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=01804741

sys-cluster/slurm: Disable ld.gold, bug filed upstream

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sys-cluster/slurm/slurm-17.02.11.ebuild | 3 ++-
 sys-cluster/slurm/slurm-17.11.7.ebuild  | 3 ++-
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/sys-cluster/slurm/slurm-17.02.11.ebuild 
b/sys-cluster/slurm/slurm-17.02.11.ebuild
index 9387b9d5355..b52290725ed 100644
--- a/sys-cluster/slurm/slurm-17.02.11.ebuild
+++ b/sys-cluster/slurm/slurm-17.02.11.ebuild
@@ -22,7 +22,7 @@ else
S="${WORKDIR}/${MY_P}"
 fi
 
-inherit autotools eutils pam perl-module prefix user ${INHERIT_GIT}
+inherit autotools eutils pam perl-module prefix toolchain-funcs user 
${INHERIT_GIT}
 
 DESCRIPTION="A Highly Scalable Resource Manager"
 HOMEPAGE="https://www.schedmd.com";
@@ -71,6 +71,7 @@ pkg_setup() {
 }
 
 src_prepare() {
+   tc-ld-disable-gold
default
 
# pids should go to /var/run/slurm

diff --git a/sys-cluster/slurm/slurm-17.11.7.ebuild 
b/sys-cluster/slurm/slurm-17.11.7.ebuild
index dcd9cec0e6d..c0310a53cc3 100644
--- a/sys-cluster/slurm/slurm-17.11.7.ebuild
+++ b/sys-cluster/slurm/slurm-17.11.7.ebuild
@@ -22,7 +22,7 @@ else
S="${WORKDIR}/${MY_P}"
 fi
 
-inherit autotools bash-completion-r1 eutils pam perl-module prefix user 
${INHERIT_GIT}
+inherit autotools bash-completion-r1 eutils pam perl-module prefix 
toolchain-funcs user ${INHERIT_GIT}
 
 DESCRIPTION="A Highly Scalable Resource Manager"
 HOMEPAGE="https://www.schedmd.com";
@@ -72,6 +72,7 @@ pkg_setup() {
 }
 
 src_prepare() {
+   tc-ld-disable-gold
default
 
# pids should go to /var/run/slurm



[gentoo-commits] proj/sci:master commit in: app-admin/eselect/files/

2018-06-09 Thread Justin Lecher
commit: d39b8890d1ed73efb2035a5b2689d3cb7c72fcb5
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Jun  9 20:34:06 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Jun  9 20:34:06 2018 +
URL:https://gitweb.gentoo.org/proj/sci.git/commit/?id=d39b8890

app-admin/eselect: Update Patch

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 .../files/eselect-1.4.13-alternatives.patch| 41 +++---
 1 file changed, 20 insertions(+), 21 deletions(-)

diff --git a/app-admin/eselect/files/eselect-1.4.13-alternatives.patch 
b/app-admin/eselect/files/eselect-1.4.13-alternatives.patch
index 1d541722c..4e7455e6d 100644
--- a/app-admin/eselect/files/eselect-1.4.13-alternatives.patch
+++ b/app-admin/eselect/files/eselect-1.4.13-alternatives.patch
@@ -1,12 +1,12 @@
  bin/Makefile.am  |   1 +
  bin/eselect.in   | 150 +++-
  libs/Makefile.am |   7 +-
- libs/alternatives-common.bash.in | 510 +++
+ libs/alternatives-common.bash.in | 509 +++
  libs/alternatives.bash.in| 316 
  modules/Makefile.am  |   1 +
  modules/alternatives.eselect | 178 ++
  modules/modules.eselect  | 288 ++
- 8 files changed, 1343 insertions(+), 108 deletions(-)
+ 8 files changed, 1342 insertions(+), 108 deletions(-)
 
 diff --git a/bin/Makefile.am b/bin/Makefile.am
 index 20902c1..ad08867 100644
@@ -21,7 +21,7 @@ index 20902c1..ad08867 100644
  
  % : %.in
 diff --git a/bin/eselect.in b/bin/eselect.in
-index 934a10a..5242ed3 100755
+index 432f4e8..840eb94 100755
 --- a/bin/eselect.in
 +++ b/bin/eselect.in
 @@ -22,10 +22,18 @@ ESELECT_DATA_PATH="@DATADIR@/eselect"
@@ -46,7 +46,7 @@ index 934a10a..5242ed3 100755
  
  # Look in this place for libraries
  ESELECT_CORE_PATH="${ESELECT_DATA_PATH}/libs"
-@@ -64,12 +72,27 @@ fi
+@@ -66,12 +74,27 @@ fi
  # Load core functions
  source "${ESELECT_CORE_PATH}/core.bash" || exit 255
  # Load necessary functions for the main script
@@ -75,7 +75,7 @@ index 934a10a..5242ed3 100755
  # es_do_usage
  # Display eselect usage
  es_do_usage() {
-@@ -81,14 +104,10 @@ es_do_usage() {
+@@ -83,14 +106,10 @@ es_do_usage() {
  es_do_help() {
es_do_usage
echo
@@ -92,7 +92,7 @@ index 934a10a..5242ed3 100755
  }
  
  # es_do_version
-@@ -100,6 +119,114 @@ es_do_version() {
+@@ -102,6 +121,114 @@ es_do_version() {
echo "Distributed under the terms of the GNU GPL version 2 or later."
  }
  
@@ -207,7 +207,7 @@ index 934a10a..5242ed3 100755
  ### main code ###
  
  # figure out what the action is. we need to know whether we're
-@@ -141,6 +268,9 @@ while [[ ${1##--} != "$1" ]]; do
+@@ -143,6 +270,9 @@ while [[ ${1##--} != "$1" ]]; do
*) die -q "Invalid argument for ${1%%=*} 
option" ;;
esac
;;
@@ -218,7 +218,7 @@ index 934a10a..5242ed3 100755
[[ -z ${action} ]] || die -q "Too many parameters"
action=${1##--}
 diff --git a/libs/Makefile.am b/libs/Makefile.am
-index 027ef73..a5fe373 100644
+index 6ebd08e..c19f173 100644
 --- a/libs/Makefile.am
 +++ b/libs/Makefile.am
 @@ -1,6 +1,8 @@
@@ -239,22 +239,22 @@ index 027ef73..a5fe373 100644
config.bash.in \
core.bash.in \
default.eselect.in \
-@@ -30,7 +34,8 @@ dosed = @SED@ \
-   -e 's%\@SED\@%@SED@%g' \
+@@ -31,7 +35,8 @@ dosed = @SED@ \
-e 's%\@PORTAGEQ\@%@PORTAGEQ@%g' \
-e 's%\@ENV_UPDATE\@%@ENV_UPDATE@%g' \
--  -e 's%\@CANONICALISE\@%@CANONICALISE@%g'
-+  -e 's%\@CANONICALISE\@%@CANONICALISE@%g' \
+   -e 's%\@CANONICALISE\@%@CANONICALISE@%g' \
+-  -e 's%\@libdir\@%@libdir@%g'
++  -e 's%\@libdir\@%@libdir@%g' \
 +  -e 's%\@sysconfdir\@%@sysconfdir@%g'
  
  %.bash : %.bash.in
@$(dosed) $< > $@
 diff --git a/libs/alternatives-common.bash.in 
b/libs/alternatives-common.bash.in
 new file mode 100644
-index 000..8753b89
+index 000..024d41e
 --- /dev/null
 +++ b/libs/alternatives-common.bash.in
-@@ -0,0 +1,510 @@
+@@ -0,0 +1,509 @@
 +# Copyright (c) 2005-2015 Gentoo Foundation
 +# Copyright (c) 2008 Mike Kelly
 +# Copyright (c) 2009-2013 David Leverton
@@ -277,8 +277,7 @@ index 000..8753b89
 +inherit config output path-manipulation tests
 +
 +: "${ALTERNATIVESDIR_ROOTLESS:=@sysconfdir@/env.d/alternatives}"
-+: "${ALTERNATIVESDIR_ROOT:=${ROOT%/}}"
-+ALTERNATIVESDIR="${ALTERNATIVESDIR_ROOT}${ALTERNATIVESDIR_ROOTLESS}"
++ALTERNATIVESDIR="${EROOT%/}${ALTERNATIVESDIR_ROOTLESS}"
 +
 +get_current_provider() {
 +  local 

[gentoo-commits] repo/gentoo:master commit in: sci-biology/rebase/

2018-06-09 Thread Justin Lecher
commit: a5be401eb7bc3db5dac8d258e6f6f9d4f85cfac4
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Jun  9 20:33:03 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Jun  9 20:33:20 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=a5be401e

sci-biology/rebase: Bump to latest release

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sci-biology/rebase/Manifest   |  1 +
 sci-biology/rebase/rebase-1806.ebuild | 45 +++
 2 files changed, 46 insertions(+)

diff --git a/sci-biology/rebase/Manifest b/sci-biology/rebase/Manifest
index e27e133eac6..8eb06d8cba3 100644
--- a/sci-biology/rebase/Manifest
+++ b/sci-biology/rebase/Manifest
@@ -3,3 +3,4 @@ DIST rebase-1702.tar.xz 117583312 BLAKE2B 
19089d5767c35da22fb95bac7bc030ef593b15
 DIST rebase-1703.tar.xz 122252304 BLAKE2B 
26afca990e300a5c471f55b1a168b1930212a347b70dd3224a51894bb701540a27a0384bd250caee8e0d0dd4886c6664ab74b20bcfb71fd42d1c73ebf2ce6be6
 SHA512 
838bf5e09073ff8520403d955a8195298def1d792d1fd3044e7c8896c6202a0340c1e96dbe80e85c5801cd3be3ed63f19488101cca02d46cdf5f1d0521ede796
 DIST rebase-1704.tar.xz 124351900 BLAKE2B 
bdbda714cc07f744b56c83b80a1b0f0a724a990b200c615458852910f282761aaf37a312a388ec7fee94a62ead47e01ddca8b205f2ad05d780a299e7547206f7
 SHA512 
0e4019d41ccbae86b8cb1f6dfa4c34d3fccbe084a330f04f2fdb774186e35c761655e1619d9a90d444ea3bab0910df1b60cf9a249ee31d66a254d28dd6b32cc7
 DIST rebase-1803.tar.xz 152581448 BLAKE2B 
7907f0aee9e202f062f5ec4b5e4a112cd0fb3900b3d65dc57ffe4832c5aac088f50c2661f1b9c1bb8b57e7b4f6d453bec2899b460383d06b4e679da13e92aad2
 SHA512 
ab718e87c33c975bc6a93d3c6be130c9751612b744dc5451bcfde5c10d3d9d68ed4a4d921fff1f48063bfa2e9f3c8a016d4e5e0afa4eb7e4131511767608534b
+DIST rebase-1806.tar.xz 161844712 BLAKE2B 
901167b502b85e88eaa9a8886c5ccac8bf1ec16a7736694b90f896bd4d87ae3792d09f6b154118a6063e30b94a5633b37a7811aefc1d39467d0043d887aeb64a
 SHA512 
9c9c0ef89c8f8e43516c052a06395d61c423b53a79553ceccd992bf72872ece44696091c11c816213b93532aac54a476fe87475f4f67baaa87bc50f64e847d48

diff --git a/sci-biology/rebase/rebase-1806.ebuild 
b/sci-biology/rebase/rebase-1806.ebuild
new file mode 100644
index 000..e9944bde30f
--- /dev/null
+++ b/sci-biology/rebase/rebase-1806.ebuild
@@ -0,0 +1,45 @@
+# Copyright 1999-2018 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=6
+
+MY_PV=${PV#1}
+
+DESCRIPTION="A restriction enzyme database"
+HOMEPAGE="http://rebase.neb.com";
+SRC_URI="https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz";
+
+SLOT="0"
+LICENSE="public-domain"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris 
~x86-solaris"
+IUSE="emboss minimal"
+
+RDEPEND="emboss? ( >=sci-biology/emboss-5.0.0 )"
+DEPEND="${RDEPEND}"
+
+RESTRICT="binchecks strip"
+
+src_compile() {
+   if use emboss; then
+   echo; einfo "Indexing Rebase for usage with EMBOSS."
+   mkdir REBASE || die
+   EMBOSS_DATA="." rebaseextract -auto -infile withrefm.${MY_PV} \
+   -protofile proto.${MY_PV} -equivalences \
+   || die "Indexing Rebase failed."
+   echo
+   fi
+}
+
+src_install() {
+   if ! use minimal; then
+   insinto /usr/share/${PN}
+   doins withrefm.${MY_PV} proto.${MY_PV}
+   fi
+   newdoc REBASE.DOC README
+   if use emboss; then
+   insinto /usr/share/EMBOSS/data/REBASE
+   doins REBASE/embossre.{enz,ref,sup}
+   insinto /usr/share/EMBOSS/data
+   doins REBASE/embossre.equ
+   fi
+}



[gentoo-commits] repo/gentoo:master commit in: sys-cluster/slurm/, sys-cluster/slurm/files/

2018-06-09 Thread Justin Lecher
commit: 7f3509acf5cb66578a5a17946cf473198af68550
Author: Justin Lecher  gentoo  org>
AuthorDate: Sat Jun  9 14:31:33 2018 +
Commit:     Justin Lecher  gentoo  org>
CommitDate: Sat Jun  9 20:33:19 2018 +
URL:https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7f3509ac

sys-cluster/slurm: Version Bump to mitigate CVE-2018-10995

Signed-off-by: Justin Lecher  gentoo.org>
Package-Manager: Portage-2.3.40, Repoman-2.3.9

 sys-cluster/slurm/Manifest| 4 ++--
 ...7.02.10-disable-sview.patch => slurm-17.02.11-disable-sview.patch} | 0
 ...-17.11.5-disable-sview.patch => slurm-17.11.7-disable-sview.patch} | 0
 sys-cluster/slurm/{slurm-17.02.10.ebuild => slurm-17.02.11.ebuild}| 0
 sys-cluster/slurm/{slurm-17.11.5.ebuild => slurm-17.11.7.ebuild}  | 0
 5 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/sys-cluster/slurm/Manifest b/sys-cluster/slurm/Manifest
index 4fb2eb50441..ec10fe92e5a 100644
--- a/sys-cluster/slurm/Manifest
+++ b/sys-cluster/slurm/Manifest
@@ -1,2 +1,2 @@
-DIST slurm-17.02.10.tar.bz2 6056342 BLAKE2B 
1e6f3af68371e75a880fc28e4c7931fa61372a52bf9ce7b089c9bc62c5660c57c1e4b74d93c4105e611b9702c3bf64f1b9713d26c21513cb83bc11edc258be40
 SHA512 
b6fbec81abc36dcb5cd742363c33caeecad6c42ee80fe7a13ddc81703b5f5c28f3ddd88bbfbabe94550257d46b56d2c0e0ded9da6b92617074c57358ba33d449
-DIST slurm-17.11.5.tar.bz2 6248551 BLAKE2B 
f417546f0f140600a9408ac4c12e0299f90d75c20fe92f11a63e3234558586618d549f3851cbe201af64b1e65b17fedf4187b0edac96ec9a4c64bbc5c0e1
 SHA512 
cb82e192bf0ab57fbc810fc3c9b32e90d4c28926b4a959514e3df51b63556b13d01057938d73da5bc0bea157bbd7712b1aad0712a913ad912bd7e6089fc0bd21
+DIST slurm-17.02.11.tar.bz2 6056931 BLAKE2B 
bce33aab9705dd95b60c42aba032d3f63b69c450e6093f10ac2cfab2b6028451f5659d6263aa2cafe76eb5f91b484e95d3dea388f32fd7472b0edd5ff33f4afe
 SHA512 
f93f6afc0f6f37ba518644c52ff318ff9f3624a8326e795957f986c11ec72f1ee0dead1c7d49a1fb67df11a2f792c4ecc4f647bd3f824c8bfee1e2de0261f64c
+DIST slurm-17.11.7.tar.bz2 6249399 BLAKE2B 
1a57996440611e1976ac382c1be845649baf930913ad52c8afeecc32e1037115d9477acc4a9ab936c09b60c50d72e3f0398ea3c4ee9490d5057f98ce5990d52e
 SHA512 
1761bad0b355f7d76021f9c1023cff4c315ec727fab8045f6aca4d096cdba3ec44a52942e007877d40c396d791537eb7e61a8c2f2538bdcb3854e40cee9e73ea

diff --git a/sys-cluster/slurm/files/slurm-17.02.10-disable-sview.patch 
b/sys-cluster/slurm/files/slurm-17.02.11-disable-sview.patch
similarity index 100%
rename from sys-cluster/slurm/files/slurm-17.02.10-disable-sview.patch
rename to sys-cluster/slurm/files/slurm-17.02.11-disable-sview.patch

diff --git a/sys-cluster/slurm/files/slurm-17.11.5-disable-sview.patch 
b/sys-cluster/slurm/files/slurm-17.11.7-disable-sview.patch
similarity index 100%
rename from sys-cluster/slurm/files/slurm-17.11.5-disable-sview.patch
rename to sys-cluster/slurm/files/slurm-17.11.7-disable-sview.patch

diff --git a/sys-cluster/slurm/slurm-17.02.10.ebuild 
b/sys-cluster/slurm/slurm-17.02.11.ebuild
similarity index 100%
rename from sys-cluster/slurm/slurm-17.02.10.ebuild
rename to sys-cluster/slurm/slurm-17.02.11.ebuild

diff --git a/sys-cluster/slurm/slurm-17.11.5.ebuild 
b/sys-cluster/slurm/slurm-17.11.7.ebuild
similarity index 100%
rename from sys-cluster/slurm/slurm-17.11.5.ebuild
rename to sys-cluster/slurm/slurm-17.11.7.ebuild



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